General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000303460
Gene ID:	ENSG00000180818
Gene Name:	HOXC10
Sequence (UNICHARACTER ENCODING)	CCCCUUCUUUUUCCUCCCUCCCCUCCAACCGCGCCCCCCCUCCCGGAUGGGGAAAAAAAAAGAUGUCAGCUCCUCCGCUGUAGUAUUGCUCCUUAAAAACCCCUCUCUCUGAAAAUGACAUGCCCUCGCAAUGUAACUCCGAACUCGUACGCGGAGCCCUUGGCUGCGCCCGGCGGAGGAGAGCGCUAUAGCCGGAGCGCAGGCAUGUAUAUGCAGUCUGGGAGUGACUUCAAUUGCGGGGUGAUGAGGGGCUGCGGGCUCGCGCCCUCGCUCUCCAAGAGGGACGAGGGCAGCAGCCCCAGCCUCGCCCUCAACACCUAUCCGUCCUACCUCUCGCAGCUGGЖCUCCUGGGGCGACCCCAAAGCCGCCUAUCGCCUGGAACAACCUGUUGGCAGGCCGCUGUCCUCCUGCUCCUACCCACCUAGUGUCAAGGAGGAGAAUGUCUGCUGCAUGUACAGCGCAGAGAAGCGGGCGAAAAGUGGCCCCGAGGCAGCUCUCUACUCCCACCCCUUGCCGGAGUCCUGCCUUGGGGAGCACGAGGUACCCGUGCCCAGCUACUACCGCGCCAGCCCGAGCUACUCCGCGCUGGACAAGACGCCCCACUGUUCUGGGGCCAACGACUUCGAAGCCCCUUUCGAGCAGCGGGCCAGUCUCAACCCGCGCGCCGAACAUCUGGAAUCGCCUCAGCUGGGGGGCAAAGUGAGUUUCCCUGAGACCCCCAAGUCCGACAGCCAGACCCCCAGCCCCAAUGAAAUCAAGACGGAGCAGAGCCUGGCGGGCCCUAAAGGGAGCCCCUCGGAGAGCGAAAAGGAGAGGGCCAAAGCUGCCGACUCCAGCCCAGACACCUCGGAUAACGAAGCGAAAGAGGAGAUAAAGGCAGAAAACACCACAGGAAAUUGGCUGACAGCAAAGAGCGGAAGGAAGAAGAGGUGCCCCUAUACUAAACACCAGACGCUGGAAUUGGAGAAAGAAUUUCUGUUCAAUAUGUAUUUGACGCGAGAGCGCCGCCUGGAGAUUAGCAAGACCAUUAACCUUACЖGЖCAGACAAGUCAAAAUCUGGUUUCAAAAUCGCAGAAUGAAACUCAAGAAAAUGAЖCCGAGAGAAUCGGAUCCGGGAЖCUGACCUCCAAUUUUAAUUUCACCUGAGAGCGCGGCCUCUCCUCCUCCCUUCCCGCUCCUUCCUCUCCCCGCCCCPCCUCCCUUUGUGCCUGGUGAUAUAUUUUUUUUUCCUCCCUGAGUAUAAAUGCAAUGCGACUGCAAAAAAGGCAAAGACCUCAGЖCUCUCCUUCCAAGGGЖCCUGUGGUUCGUGCUGCGAAGAUGCUUCCACUUAAAGCAUGAGAAAUGGGGUGCCGGGAUGUGGGGUGUGGUGUGUGCCCUCAUAGAUGGGGGUGGGAGUGUGGCUGGUGUGUGUGUCAAGCCCUCACUCACCCACGCACUCACACACAGCAUUCUGUUCUCCAUGCAAAGUUAAGAUCGAAUCCAUCCGCUUGUAGGGGAAAAAAAGGAAAAAAAUUAACCAGAGAGGGUCUGUAAUCUCGCAGAGCACAGGCAGAAUCGUUCCUUCCUUGCUGCAUUUCCUCCUUAGACUAAUAGACGUUUUGGAAAGUUCGGCUAGUGUUCGUGUGUUUGUCGUAGCACCCAGAGCCUCCACCAAACCCUCUCCAUGUCUPUACCUCCCAGUCGCUCUAAGAAUCUGCUUGAAGUCUCGUAUUUGUACUGCUUUCUGCUUUUCUCCCACCCCUCCUAGCACCCCCACAPCCCCCAUCUAGUAACAUCUCAGAAAUUUCAPCCAGAGGAACAAAAAAAUUAAAAAUAGAACAUAGCAAAGCAAAGACAGAAUGCCCCCCCCCCCAAAUAUUGUCCUGUCCCUGUCUGGGAGUUGUGUUAUUUAAAGAUAUUCUGUAUGUUGUAUCUUUUGCAUGUAGCUUCCUUAAUGGAGAAAAAAAAACCUAAUAAAUUUCCAGAAUCAUAAUCCUCAAA
Sequence (SHORT NAMES ENCODING)	CCCCUUCUUUUUCCUCCCUCCCCUCCAACCGCGCCCCCCCUCCCGGAUGGGGAAAAAAAAAGAUGUCAGCUCCUCCGCUGUAGUAUUGCUCCUUAAAAACCCCUCUCUCUGAAAAUGACAUGCCCUCGCAAUGUAACUCCGAACUCGUACGCGGAGCCCUUGGCUGCGCCCGGCGGAGGAGAGCGCUAUAGCCGGAGCGCAGGCAUGUAUAUGCAGUCUGGGAGUGACUUCAAUUGCGGGGUGAUGAGGGGCUGCGGGCUCGCGCCCUCGCUCUCCAAGAGGGACGAGGGCAGCAGCCCCAGCCUCGCCCUCAACACCUAUCCGUCCUACCUCUCGCAGCUGGm6ACUCCUGGGGCGACCCCAAAGCCGCCUAUCGCCUGGAACAACCUGUUGGCAGGCCGCUGUCCUCCUGCUCCUACCCACCUAGUGUCAAGGAGGAGAAUGUCUGCUGCAUGUACAGCGCAGAGAAGCGGGCGAAAAGUGGCCCCGAGGCAGCUCUCUACUCCCACCCCUUGCCGGAGUCCUGCCUUGGGGAGCACGAGGUACCCGUGCCCAGCUACUACCGCGCCAGCCCGAGCUACUCCGCGCUGGACAAGACGCCCCACUGUUCUGGGGCCAACGACUUCGAAGCCCCUUUCGAGCAGCGGGCCAGUCUCAACCCGCGCGCCGAACAUCUGGAAUCGCCUCAGCUGGGGGGCAAAGUGAGUUUCCCUGAGACCCCCAAGUCCGACAGCCAGACCCCCAGCCCCAAUGAAAUCAAGACGGAGCAGAGCCUGGCGGGCCCUAAAGGGAGCCCCUCGGAGAGCGAAAAGGAGAGGGCCAAAGCUGCCGACUCCAGCCCAGACACCUCGGAUAACGAAGCGAAAGAGGAGAUAAAGGCAGAAAACACCACAGGAAAUUGGCUGACAGCAAAGAGCGGAAGGAAGAAGAGGUGCCCCUAUACUAAACACCAGACGCUGGAAUUGGAGAAAGAAUUUCUGUUCAAUAUGUAUUUGACGCGAGAGCGCCGCCUGGAGAUUAGCAAGACCAUUAACCUUACm6AGm6ACAGACAAGUCAAAAUCUGGUUUCAAAAUCGCAGAAUGAAACUCAAGAAAAUGAm6ACCGAGAGAAUCGGAUCCGGGAm6ACUGACCUCCAAUUUUAAUUUCACCUGAGAGCGCGGCCUCUCCUCCUCCCUUCCCGCUCCUUCCUCUCCCCGCCCCYCCUCCCUUUGUGCCUGGUGAUAUAUUUUUUUUUCCUCCCUGAGUAUAAAUGCAAUGCGACUGCAAAAAAGGCAAAGACCUCAGm6ACUCUCCUUCCAAGGGm6ACCUGUGGUUCGUGCUGCGAAGAUGCUUCCACUUAAAGCAUGAGAAAUGGGGUGCCGGGAUGUGGGGUGUGGUGUGUGCCCUCAUAGAUGGGGGUGGGAGUGUGGCUGGUGUGUGUGUCAAGCCCUCACUCACCCACGCACUCACACACAGCAUUCUGUUCUCCAUGCAAAGUUAAGAUCGAAUCCAUCCGCUUGUAGGGGAAAAAAAGGAAAAAAAUUAACCAGAGAGGGUCUGUAAUCUCGCAGAGCACAGGCAGAAUCGUUCCUUCCUUGCUGCAUUUCCUCCUUAGACUAAUAGACGUUUUGGAAAGUUCGGCUAGUGUUCGUGUGUUUGUCGUAGCACCCAGAGCCUCCACCAAACCCUCUCCAUGUCUYUACCUCCCAGUCGCUCUAAGAAUCUGCUUGAAGUCUCGUAUUUGUACUGCUUUCUGCUUUUCUCCCACCCCUCCUAGCACCCCCACAYCCCCCAUCUAGUAACAUCUCAGAAAUUUCAYCCAGAGGAACAAAAAAAUUAAAAAUAGAACAUAGCAAAGCAAAGACAGAAUGCCCCCCCCCCCAAAUAUUGUCCUGUCCCUGUCUGGGAGUUGUGUUAUUUAAAGAUAUUCUGUAUGUUGUAUCUUUUGCAUGUAGCUUCCUUAAUGGAGAAAAAAAAACCUAAUAAAUUUCCAGAAUCAUAAUCCUCAAA
Sequence (MODOMICS CODE ENCODING)	CCCCUUCUUUUUCCUCCCUCCCCUCCAACCGCGCCCCCCCUCCCGGAUGGGGAAAAAAAAAGAUGUCAGCUCCUCCGCUGUAGUAUUGCUCCUUAAAAACCCCUCUCUCUGAAAAUGACAUGCCCUCGCAAUGUAACUCCGAACUCGUACGCGGAGCCCUUGGCUGCGCCCGGCGGAGGAGAGCGCUAUAGCCGGAGCGCAGGCAUGUAUAUGCAGUCUGGGAGUGACUUCAAUUGCGGGGUGAUGAGGGGCUGCGGGCUCGCGCCCUCGCUCUCCAAGAGGGACGAGGGCAGCAGCCCCAGCCUCGCCCUCAACACCUAUCCGUCCUACCUCUCGCAGCUGG2000000006ACUCCUGGGGCGACCCCAAAGCCGCCUAUCGCCUGGAACAACCUGUUGGCAGGCCGCUGUCCUCCUGCUCCUACCCACCUAGUGUCAAGGAGGAGAAUGUCUGCUGCAUGUACAGCGCAGAGAAGCGGGCGAAAAGUGGCCCCGAGGCAGCUCUCUACUCCCACCCCUUGCCGGAGUCCUGCCUUGGGGAGCACGAGGUACCCGUGCCCAGCUACUACCGCGCCAGCCCGAGCUACUCCGCGCUGGACAAGACGCCCCACUGUUCUGGGGCCAACGACUUCGAAGCCCCUUUCGAGCAGCGGGCCAGUCUCAACCCGCGCGCCGAACAUCUGGAAUCGCCUCAGCUGGGGGGCAAAGUGAGUUUCCCUGAGACCCCCAAGUCCGACAGCCAGACCCCCAGCCCCAAUGAAAUCAAGACGGAGCAGAGCCUGGCGGGCCCUAAAGGGAGCCCCUCGGAGAGCGAAAAGGAGAGGGCCAAAGCUGCCGACUCCAGCCCAGACACCUCGGAUAACGAAGCGAAAGAGGAGAUAAAGGCAGAAAACACCACAGGAAAUUGGCUGACAGCAAAGAGCGGAAGGAAGAAGAGGUGCCCCUAUACUAAACACCAGACGCUGGAAUUGGAGAAAGAAUUUCUGUUCAAUAUGUAUUUGACGCGAGAGCGCCGCCUGGAGAUUAGCAAGACCAUUAACCUUAC2000000006AG2000000006ACAGACAAGUCAAAAUCUGGUUUCAAAAUCGCAGAAUGAAACUCAAGAAAAUGA2000000006ACCGAGAGAAUCGGAUCCGGGA2000000006ACUGACCUCCAAUUUUAAUUUCACCUGAGAGCGCGGCCUCUCCUCCUCCCUUCCCGCUCCUUCCUCUCCCCGCCCC2000000009UCCUCCCUUUGUGCCUGGUGAUAUAUUUUUUUUUCCUCCCUGAGUAUAAAUGCAAUGCGACUGCAAAAAAGGCAAAGACCUCAG2000000006ACUCUCCUUCCAAGGG2000000006ACCUGUGGUUCGUGCUGCGAAGAUGCUUCCACUUAAAGCAUGAGAAAUGGGGUGCCGGGAUGUGGGGUGUGGUGUGUGCCCUCAUAGAUGGGGGUGGGAGUGUGGCUGGUGUGUGUGUCAAGCCCUCACUCACCCACGCACUCACACACAGCAUUCUGUUCUCCAUGCAAAGUUAAGAUCGAAUCCAUCCGCUUGUAGGGGAAAAAAAGGAAAAAAAUUAACCAGAGAGGGUCUGUAAUCUCGCAGAGCACAGGCAGAAUCGUUCCUUCCUUGCUGCAUUUCCUCCUUAGACUAAUAGACGUUUUGGAAAGUUCGGCUAGUGUUCGUGUGUUUGUCGUAGCACCCAGAGCCUCCACCAAACCCUCUCCAUGUCU2000000009UUACCUCCCAGUCGCUCUAAGAAUCUGCUUGAAGUCUCGUAUUUGUACUGCUUUCUGCUUUUCUCCCACCCCUCCUAGCACCCCCACA2000000009UCCCCCAUCUAGUAACAUCUCAGAAAUUUCA2000000009UCCAGAGGAACAAAAAAAUUAAAAAUAGAACAUAGCAAAGCAAAGACAGAAUGCCCCCCCCCCCAAAUAUUGUCCUGUCCCUGUCUGGGAGUUGUGUUAUUUAAAGAUAUUCUGUAUGUUGUAUCUUUUGCAUGUAGCUUCCUUAAUGGAGAAAAAAAAACCUAAUAAAUUUCCAGAAUCAUAAUCCUCAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	344	1038	1040	1094	1116	1192	1276	1292	1666	1754	1785
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y	Y	Y
Genomic Coordinates	12:53985489:+	12:53989341:+	12:53989343:+	12:53989397:+	12:53989419:+	12:53989495:+	12:53989579:+	12:53989595:+	12:53989969:+	12:53990057:+	12:53990088:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8