General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000539176
Gene ID:	ENSG00000087448
Gene Name:	KLHL42
Sequence (UNICHARACTER ENCODING)	CCUGGCGCCGCCCGGGAGAGCCCGCGCGAGGACGCCCGCCGCGCUCCGCCGGCCCUUUUUUGGCGCUGAGGGAAAGGAGAAGGGCAGGGCCGCCGCCUCGCGGGAGCGGGCCCCGGGAGGAGGGGCCGCCGGAGAGGCCGGGCGAGCGCGGGCGGCCCUCACCUCGCCGCUCCUCCCGGGCCGCCAUCCCUCGGCGCCCCGCCCGGAACCGGCGCGCGCGUAGGGGCUGGGAGGCCGGCGCGCAGAUCUGGCGGUGAGCGCUGCCGCCCCGGGGCCCCCAGCCAUGUCGGCCGAGGAGAUGGUGCAGAUCCGCCUGGAGGACCGCUGCUACCCGGUGAGCAAGAGGAAGCUCAUCGAGCAGAGCGACUACUUCCGCGCCCUCUACCGCUCCGGCAUGCGCGAGGCCCUGAGCCAGGAGGCCGGCGGCCCGGAGGUGCAGCAGCUGCGCGGCCUCAGCGCGCCGGGCCUGCGGCUGGUGCUGGЖCUUCAUCAACGCCGGCGGGGCCCGCGAAGGCUGGCUCCUGGGCCCGCGCGGGGAAAAGGGCGGCGGGGUGGACGAGGACGAGGAGAUGGAUGAGGUGAGCCUGCUGUCCGAGCUGGUGGAGGCGGCCUCCUUCCUGCAGGUCACGUCCCUGCUGCAGCUGCUGCUGUCCCAGGUGCGGCUCAAUAЖCUGCCUGGAGAUGUACCGCCUGGCGCAGGUGUACGGGCUGCCCGACCUGCAGGAGGCCUGCCUGCGCUUCAUGGUCGUCCACUUCCACGAGGUGCUGUGCAAGCCCCAGUUCCACCUCCUGGGGUCUCCUCCCCAAGCUCCAGGGGAUGUCAGCCUGAAGCAGAGGCUGAGGGAGGCCCGGAUGACUGGGЖCUCCUGUCCUCGUGGCCCUCGGGGЖCUUCCUGGGGGGACCCCUGGCCCCUCACCCCUACCAGGGGGAGCCCCCGUCCAUGCUCAGGUACGAGGAGAUGЖCUGAGCGUUGGUUCCCGCUGGCCAACAACCUUCCUCCCGACCUGGUCAAUGUCAGGGGCUAUGGGUCUGCCAUCCUGGACAACUACCUCUUCAUAGUGGGCGGGUACAGGAUCACUAGCCAGGAGAUCUCCGCUGCGCAUUCCUACAACCCCAGCACCAACGAGUGGCUCCAGGUGGCCUCCAUGAACCAGAAGAGGUCUAACUUCAAACUUGUGGCUGUUAAUUCAAAACUCUAUGCCAUCGGAGGGCAGGCCGUUUCUAACGUUGAGUGUUACAACCCCGAGCAGGAUGCGUGGAAUUUUGUGGCGCCCUUACCCAAUCCUCUGGCUGAGUUCUCUGCCUGUGAGUGUAAGGGAAAAAUUUAUGUCAUUGGAGGAUACACUACCAGAGACAGCCUCUGGAGAUCCUGUGUUGCUACUUGUCAUGUUUCUUAGGAUCAGCUAUCAAGAAUAAUCUACUUGCUGCCCAGCCUGGCUUCUGUAUUAAGUAGUCGACCGGAACAUGAACAUUUUGCAGUACUGCCCCUCUUCCGACAUGUGGЖCGCUCUUUGAAACAUGUGACGUCCACAUUCGCAAGCAGCAGAUGGUGUCUGUGGAAGAGACCAUCUACAUCGUGGGGGGGUGUCUCCACGAGCUGGGGCCCAACCGCAGGAGCAGCCAGAGCGAGGACAUGCUCACCGUGCAGUCCUACAACACCGUCACCCGCCAGUGGCUCUACCUCAAGGAGAACACGUCCAAAUCGGGUCUUAЖCUUGЖCUUGUGCGCUCCAUAACGACGGCAUCUACAUCAUGAGCAGAGACGUCACCCUGUCGACCAGCUUGGAACACCGAGUGUUCCUCAAGUACAACAUCUUUUCAGAUAGUUGGGAAGCAUUUCGGCGUUUUCCAGCUUUUGGЖCAPAЖCUUGCUGGUUUCUUCUCUUUAUCUGCCCAAUAAAGC
Sequence (SHORT NAMES ENCODING)	CCUGGCGCCGCCCGGGAGAGCCCGCGCGAGGACGCCCGCCGCGCUCCGCCGGCCCUUUUUUGGCGCUGAGGGAAAGGAGAAGGGCAGGGCCGCCGCCUCGCGGGAGCGGGCCCCGGGAGGAGGGGCCGCCGGAGAGGCCGGGCGAGCGCGGGCGGCCCUCACCUCGCCGCUCCUCCCGGGCCGCCAUCCCUCGGCGCCCCGCCCGGAACCGGCGCGCGCGUAGGGGCUGGGAGGCCGGCGCGCAGAUCUGGCGGUGAGCGCUGCCGCCCCGGGGCCCCCAGCCAUGUCGGCCGAGGAGAUGGUGCAGAUCCGCCUGGAGGACCGCUGCUACCCGGUGAGCAAGAGGAAGCUCAUCGAGCAGAGCGACUACUUCCGCGCCCUCUACCGCUCCGGCAUGCGCGAGGCCCUGAGCCAGGAGGCCGGCGGCCCGGAGGUGCAGCAGCUGCGCGGCCUCAGCGCGCCGGGCCUGCGGCUGGUGCUGGm6ACUUCAUCAACGCCGGCGGGGCCCGCGAAGGCUGGCUCCUGGGCCCGCGCGGGGAAAAGGGCGGCGGGGUGGACGAGGACGAGGAGAUGGAUGAGGUGAGCCUGCUGUCCGAGCUGGUGGAGGCGGCCUCCUUCCUGCAGGUCACGUCCCUGCUGCAGCUGCUGCUGUCCCAGGUGCGGCUCAAUAm6ACUGCCUGGAGAUGUACCGCCUGGCGCAGGUGUACGGGCUGCCCGACCUGCAGGAGGCCUGCCUGCGCUUCAUGGUCGUCCACUUCCACGAGGUGCUGUGCAAGCCCCAGUUCCACCUCCUGGGGUCUCCUCCCCAAGCUCCAGGGGAUGUCAGCCUGAAGCAGAGGCUGAGGGAGGCCCGGAUGACUGGGm6ACUCCUGUCCUCGUGGCCCUCGGGGm6ACUUCCUGGGGGGACCCCUGGCCCCUCACCCCUACCAGGGGGAGCCCCCGUCCAUGCUCAGGUACGAGGAGAUGm6ACUGAGCGUUGGUUCCCGCUGGCCAACAACCUUCCUCCCGACCUGGUCAAUGUCAGGGGCUAUGGGUCUGCCAUCCUGGACAACUACCUCUUCAUAGUGGGCGGGUACAGGAUCACUAGCCAGGAGAUCUCCGCUGCGCAUUCCUACAACCCCAGCACCAACGAGUGGCUCCAGGUGGCCUCCAUGAACCAGAAGAGGUCUAACUUCAAACUUGUGGCUGUUAAUUCAAAACUCUAUGCCAUCGGAGGGCAGGCCGUUUCUAACGUUGAGUGUUACAACCCCGAGCAGGAUGCGUGGAAUUUUGUGGCGCCCUUACCCAAUCCUCUGGCUGAGUUCUCUGCCUGUGAGUGUAAGGGAAAAAUUUAUGUCAUUGGAGGAUACACUACCAGAGACAGCCUCUGGAGAUCCUGUGUUGCUACUUGUCAUGUUUCUUAGGAUCAGCUAUCAAGAAUAAUCUACUUGCUGCCCAGCCUGGCUUCUGUAUUAAGUAGUCGACCGGAACAUGAACAUUUUGCAGUACUGCCCCUCUUCCGACAUGUGGm6ACGCUCUUUGAAACAUGUGACGUCCACAUUCGCAAGCAGCAGAUGGUGUCUGUGGAAGAGACCAUCUACAUCGUGGGGGGGUGUCUCCACGAGCUGGGGCCCAACCGCAGGAGCAGCCAGAGCGAGGACAUGCUCACCGUGCAGUCCUACAACACCGUCACCCGCCAGUGGCUCUACCUCAAGGAGAACACGUCCAAAUCGGGUCUUAm6ACUUGm6ACUUGUGCGCUCCAUAACGACGGCAUCUACAUCAUGAGCAGAGACGUCACCCUGUCGACCAGCUUGGAACACCGAGUGUUCCUCAAGUACAACAUCUUUUCAGAUAGUUGGGAAGCAUUUCGGCGUUUUCCAGCUUUUGGm6ACAYAm6ACUUGCUGGUUUCUUCUCUUUAUCUGCCCAAUAAAGC
Sequence (MODOMICS CODE ENCODING)	CCUGGCGCCGCCCGGGAGAGCCCGCGCGAGGACGCCCGCCGCGCUCCGCCGGCCCUUUUUUGGCGCUGAGGGAAAGGAGAAGGGCAGGGCCGCCGCCUCGCGGGAGCGGGCCCCGGGAGGAGGGGCCGCCGGAGAGGCCGGGCGAGCGCGGGCGGCCCUCACCUCGCCGCUCCUCCCGGGCCGCCAUCCCUCGGCGCCCCGCCCGGAACCGGCGCGCGCGUAGGGGCUGGGAGGCCGGCGCGCAGAUCUGGCGGUGAGCGCUGCCGCCCCGGGGCCCCCAGCCAUGUCGGCCGAGGAGAUGGUGCAGAUCCGCCUGGAGGACCGCUGCUACCCGGUGAGCAAGAGGAAGCUCAUCGAGCAGAGCGACUACUUCCGCGCCCUCUACCGCUCCGGCAUGCGCGAGGCCCUGAGCCAGGAGGCCGGCGGCCCGGAGGUGCAGCAGCUGCGCGGCCUCAGCGCGCCGGGCCUGCGGCUGGUGCUGG2000000006ACUUCAUCAACGCCGGCGGGGCCCGCGAAGGCUGGCUCCUGGGCCCGCGCGGGGAAAAGGGCGGCGGGGUGGACGAGGACGAGGAGAUGGAUGAGGUGAGCCUGCUGUCCGAGCUGGUGGAGGCGGCCUCCUUCCUGCAGGUCACGUCCCUGCUGCAGCUGCUGCUGUCCCAGGUGCGGCUCAAUA2000000006ACUGCCUGGAGAUGUACCGCCUGGCGCAGGUGUACGGGCUGCCCGACCUGCAGGAGGCCUGCCUGCGCUUCAUGGUCGUCCACUUCCACGAGGUGCUGUGCAAGCCCCAGUUCCACCUCCUGGGGUCUCCUCCCCAAGCUCCAGGGGAUGUCAGCCUGAAGCAGAGGCUGAGGGAGGCCCGGAUGACUGGG2000000006ACUCCUGUCCUCGUGGCCCUCGGGG2000000006ACUUCCUGGGGGGACCCCUGGCCCCUCACCCCUACCAGGGGGAGCCCCCGUCCAUGCUCAGGUACGAGGAGAUG2000000006ACUGAGCGUUGGUUCCCGCUGGCCAACAACCUUCCUCCCGACCUGGUCAAUGUCAGGGGCUAUGGGUCUGCCAUCCUGGACAACUACCUCUUCAUAGUGGGCGGGUACAGGAUCACUAGCCAGGAGAUCUCCGCUGCGCAUUCCUACAACCCCAGCACCAACGAGUGGCUCCAGGUGGCCUCCAUGAACCAGAAGAGGUCUAACUUCAAACUUGUGGCUGUUAAUUCAAAACUCUAUGCCAUCGGAGGGCAGGCCGUUUCUAACGUUGAGUGUUACAACCCCGAGCAGGAUGCGUGGAAUUUUGUGGCGCCCUUACCCAAUCCUCUGGCUGAGUUCUCUGCCUGUGAGUGUAAGGGAAAAAUUUAUGUCAUUGGAGGAUACACUACCAGAGACAGCCUCUGGAGAUCCUGUGUUGCUACUUGUCAUGUUUCUUAGGAUCAGCUAUCAAGAAUAAUCUACUUGCUGCCCAGCCUGGCUUCUGUAUUAAGUAGUCGACCGGAACAUGAACAUUUUGCAGUACUGCCCCUCUUCCGACAUGUGG2000000006ACGCUCUUUGAAACAUGUGACGUCCACAUUCGCAAGCAGCAGAUGGUGUCUGUGGAAGAGACCAUCUACAUCGUGGGGGGGUGUCUCCACGAGCUGGGGCCCAACCGCAGGAGCAGCCAGAGCGAGGACAUGCUCACCGUGCAGUCCUACAACACCGUCACCCGCCAGUGGCUCUACCUCAAGGAGAACACGUCCAAAUCGGGUCUUA2000000006ACUUG2000000006ACUUGUGCGCUCCAUAACGACGGCAUCUACAUCAUGAGCAGAGACGUCACCCUGUCGACCAGCUUGGAACACCGAGUGUUCCUCAAGUACAACAUCUUUUCAGAUAGUUGGGAAGCAUUUCGGCGUUUUCCAGCUUUUGG2000000006ACA2000000009UA2000000006ACUUGCUGGUUUCUUCUCUUUAUCUGCCCAAUAAAGC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	483	669	860	885	959	1500	1708	1713	1853	1856	1858
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	12:27780530:+	12:27780716:+	12:27780907:+	12:27780932:+	12:27781006:+	12:27797762:+	12:27797970:+	12:27797975:+	12:27798115:+	12:27798118:+	12:27798120:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw BkoLW2CBToyL KTLz8piFYdwC nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8