Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000546868
Gene ID: ENSG00000139173
Gene Name: TMEM117
Sequence (UNICHARACTER ENCODING) CGAAUCCCGUGUGCAGUCGCCCCGCGCCCCGCGCGACCCUUCGGGUAAACUACGAACUGGGAGUUCUGAAGAAUGGGUAAAGACUUUCGUUACUAUUUCCAGCAUCCCUGGUCUCGCAUGAUUGUGGCUUACUUGGUGAUCUUCUUUAACUUCUUAAUAUUUGCGGAGGЖCCCAGUUUCUCAUAGCCAAACAGAAGCCAAUGUUAUUGUUGUUGGAAЖCUGUUUUUCAUUUGUUACAAAUAAAUACCCUAGAGGAGUUGGCUGGAGGAUUUUGAAGGUGCUUCUAUGGCUACUUGCCAUUCUCACAGGЖCUAAUAGCUGGCAAAUUUCUGUUCCAUCAGCGUUUGUUUGGUCAGUUGCUCCGAUUAAAAAUGUUUCGAGAAGAUCAUGGGUCGUGGAUGACAAUGUUCUUCAGCACAAUUCUCUUUCUCUUCAUAUUUUCUCACAUAUACAACACGAUUCUUCUAAUGGAUGGGAACAUGGGGUCACUGAUAUGAUGCUUCAGGACAAACCCUAUCCUGACUGGGGAAAAUCAGCAAGAGCUUUCUGGAAGAAAGGAAAUGUUAGGAUCACUUUAUUCUGGACAGUUCUUUUUACUCUGACGUCUGUGGUUGUACUUGUGAUUACAACGGACUGGAUCAGCUGGGACAAGCUGAAUCGGGGAUUUUUGCCCAGUGAUGAAGUUUCCAGAGCAUUCCUUGCUUCUUUUAUCUUGGUCUUUGACCUUCUUAUUGUGAUGCAGGACUGGGAAUUCCCACAUUUCAUGGGAGAUGUUGAUGUAAAUCUCCCUGGUUUGCACACCCCUCACAUGCAGUUCAAGAUUCCUUUCUUCCAGAAAAUCUUCAAGGAGGAAUAUCGUAUUCACAUAACAGGCAAAUGGUUUAACUAUGGAAUUAUCUUCCUCGUCUUGAUUUUGGAUCUUAAUAUGUGGAAGAACCAAAUAUUUUAUAAACCUCAUGAAUAUGGGCAAUAUAUCGGCCCGGGGCAGAAGAUAUAUACAGUGAAAGACUCAGAAAGUUUAAAAGAUUUGAACAGAACCAAGCUAUCCUGGGAAUGGAGGUCCAAUCACACUAACCCUCGGЖCUAAUAAAACAUAUGUUGAGGGAGACAUGUUCUUACACAGCAGGUUCAUAGGAGCCAGUCUUGAUGUCAAGUGUCUGGCCUUUGUUCCAAGCCUGAUAGCCUUUGUGUGGUUUGGAUUCUUUAUUUGGUUCUUUGGЖCGAUUUUUGAAAAAUGAGCCACGCAUGGAGAAUCAAGACAAAACUUACACUCGCAUGAAAAGAAAAUCUCCAUCAGAACAUAGCAAAGACAUGGGAAUCACUCGAGAAAACACCCAGGCUUCAGUAGAAGACCCCUUGAAUGACCCUUCUUUGGUUUGCAUCAGGUCUGACUUCAAUGAGAUCGUCUACAAGUCUUCCCACCUAACCUCGGAAAACUUGAGCUCACAGUUGAACGAAUCUACUAGUGCAACAGAAGCUGAUCAAGACCCAACGACUUCUAAAAGUACACCUACGAЖCUAGACUCGGAGAUAGЖCUUGGAGAUAACACAAAAAGCAACCUUGAGUGUAACUUUAAAAAUUUAGUCUUUCCUUUUGUAUAUGUAAGGUUUACGUAGUGUUAGGUAAAAAUAUGAЖCAAUGCCACAACGGUGCUCAACAUGCUUUUUCUAGGAUUCAUUGUUUUCUAUUUGUAUUAUAAUACACGUGCCUACUGUAUACUCAACAGUCCUCUAGAGAUUGCUUUUCACAAUUGCACAAGCUAUUACUGACUUUACAGCAUAGUGGAAGAUUAGCUGAUGACCCAUGUAUCUGAUGUUCAACCAUAGUGGUGCCUUGAGACAUUAAACUGUUUUUAACUGUACCAGAAAUGAAGUGUGGAACAGUUACCUAACCUAUUUCACAUGGGCGUUUUGUAUACAACUAUUUUGAUCUACACUUGAUGUCUGAGCAGAAAACAGAAAUAGCUAAAUGUGACUCAGGAAGUAUCUCUUGGUUUCUUAUUCAGCAGCAGAGUUGGUGACUUUGACAACUGGЖCUGCAGAGAAACAUGGUGAUCACCUUUUAAUUUUUAUUGGCUGUCUGCCAAAUAUAAAUACAGAUGCAAAAUUCAGUAAUAGGAGAUCCAUAACCCAACAUGGGUCACUACUCGUGAAAUGUGЖCUUUCUCCCACCAGUAAUUGAAAUGAGGUGAUGAUACCUAAUUAUGUUUUCCUAAUUAAAGAUAAAUUGCUACUUGAUUAAAAAUCCUGCCCUUCACCUUUGGGAACAAAGGUUAAGAGЖCACAGUUGGGCGAЖCUCUCAAAUUUAUUGGCAUUUACACAAAGUCCCAGACAACCAAGGAACUGAAGUUUUCAUCAUAUGAGAGCAGCACAUCCCACCAUUUACAAUAUUCGUAUAUCUUUCUGCAAAUAUGGCUCUGGAUAGUGAAAAUUGAAAAACAUAUGCCAACCCUGAGCAAGGGAACUCCUCAAAAAAUCAUGCAGCGGAACCUUGUCAGGUAGAGAAGCCGUGCAUGAAAGAAUUUGUUUAAUGUCUUGUUUUGCGUAUGUGUUUUUUGUUUUUGUUUUUUAAGAACUAAAUAUUGCACAUUAAUAAAUAAGAAUUAUACAGCAGUGA
Sequence (SHORT NAMES ENCODING) CGAAUCCCGUGUGCAGUCGCCCCGCGCCCCGCGCGACCCUUCGGGUAAACUACGAACUGGGAGUUCUGAAGAAUGGGUAAAGACUUUCGUUACUAUUUCCAGCAUCCCUGGUCUCGCAUGAUUGUGGCUUACUUGGUGAUCUUCUUUAACUUCUUAAUAUUUGCGGAGGm6ACCCAGUUUCUCAUAGCCAAACAGAAGCCAAUGUUAUUGUUGUUGGAAm6ACUGUUUUUCAUUUGUUACAAAUAAAUACCCUAGAGGAGUUGGCUGGAGGAUUUUGAAGGUGCUUCUAUGGCUACUUGCCAUUCUCACAGGm6ACUAAUAGCUGGCAAAUUUCUGUUCCAUCAGCGUUUGUUUGGUCAGUUGCUCCGAUUAAAAAUGUUUCGAGAAGAUCAUGGGUCGUGGAUGACAAUGUUCUUCAGCACAAUUCUCUUUCUCUUCAUAUUUUCUCACAUAUACAACACGAUUCUUCUAAUGGAUGGGAACAUGGGGUCACUGAUAUGAUGCUUCAGGACAAACCCUAUCCUGACUGGGGAAAAUCAGCAAGAGCUUUCUGGAAGAAAGGAAAUGUUAGGAUCACUUUAUUCUGGACAGUUCUUUUUACUCUGACGUCUGUGGUUGUACUUGUGAUUACAACGGACUGGAUCAGCUGGGACAAGCUGAAUCGGGGAUUUUUGCCCAGUGAUGAAGUUUCCAGAGCAUUCCUUGCUUCUUUUAUCUUGGUCUUUGACCUUCUUAUUGUGAUGCAGGACUGGGAAUUCCCACAUUUCAUGGGAGAUGUUGAUGUAAAUCUCCCUGGUUUGCACACCCCUCACAUGCAGUUCAAGAUUCCUUUCUUCCAGAAAAUCUUCAAGGAGGAAUAUCGUAUUCACAUAACAGGCAAAUGGUUUAACUAUGGAAUUAUCUUCCUCGUCUUGAUUUUGGAUCUUAAUAUGUGGAAGAACCAAAUAUUUUAUAAACCUCAUGAAUAUGGGCAAUAUAUCGGCCCGGGGCAGAAGAUAUAUACAGUGAAAGACUCAGAAAGUUUAAAAGAUUUGAACAGAACCAAGCUAUCCUGGGAAUGGAGGUCCAAUCACACUAACCCUCGGm6ACUAAUAAAACAUAUGUUGAGGGAGACAUGUUCUUACACAGCAGGUUCAUAGGAGCCAGUCUUGAUGUCAAGUGUCUGGCCUUUGUUCCAAGCCUGAUAGCCUUUGUGUGGUUUGGAUUCUUUAUUUGGUUCUUUGGm6ACGAUUUUUGAAAAAUGAGCCACGCAUGGAGAAUCAAGACAAAACUUACACUCGCAUGAAAAGAAAAUCUCCAUCAGAACAUAGCAAAGACAUGGGAAUCACUCGAGAAAACACCCAGGCUUCAGUAGAAGACCCCUUGAAUGACCCUUCUUUGGUUUGCAUCAGGUCUGACUUCAAUGAGAUCGUCUACAAGUCUUCCCACCUAACCUCGGAAAACUUGAGCUCACAGUUGAACGAAUCUACUAGUGCAACAGAAGCUGAUCAAGACCCAACGACUUCUAAAAGUACACCUACGAm6ACUAGACUCGGAGAUAGm6ACUUGGAGAUAACACAAAAAGCAACCUUGAGUGUAACUUUAAAAAUUUAGUCUUUCCUUUUGUAUAUGUAAGGUUUACGUAGUGUUAGGUAAAAAUAUGAm6ACAAUGCCACAACGGUGCUCAACAUGCUUUUUCUAGGAUUCAUUGUUUUCUAUUUGUAUUAUAAUACACGUGCCUACUGUAUACUCAACAGUCCUCUAGAGAUUGCUUUUCACAAUUGCACAAGCUAUUACUGACUUUACAGCAUAGUGGAAGAUUAGCUGAUGACCCAUGUAUCUGAUGUUCAACCAUAGUGGUGCCUUGAGACAUUAAACUGUUUUUAACUGUACCAGAAAUGAAGUGUGGAACAGUUACCUAACCUAUUUCACAUGGGCGUUUUGUAUACAACUAUUUUGAUCUACACUUGAUGUCUGAGCAGAAAACAGAAAUAGCUAAAUGUGACUCAGGAAGUAUCUCUUGGUUUCUUAUUCAGCAGCAGAGUUGGUGACUUUGACAACUGGm6ACUGCAGAGAAACAUGGUGAUCACCUUUUAAUUUUUAUUGGCUGUCUGCCAAAUAUAAAUACAGAUGCAAAAUUCAGUAAUAGGAGAUCCAUAACCCAACAUGGGUCACUACUCGUGAAAUGUGm6ACUUUCUCCCACCAGUAAUUGAAAUGAGGUGAUGAUACCUAAUUAUGUUUUCCUAAUUAAAGAUAAAUUGCUACUUGAUUAAAAAUCCUGCCCUUCACCUUUGGGAACAAAGGUUAAGAGm6ACACAGUUGGGCGAm6ACUCUCAAAUUUAUUGGCAUUUACACAAAGUCCCAGACAACCAAGGAACUGAAGUUUUCAUCAUAUGAGAGCAGCACAUCCCACCAUUUACAAUAUUCGUAUAUCUUUCUGCAAAUAUGGCUCUGGAUAGUGAAAAUUGAAAAACAUAUGCCAACCCUGAGCAAGGGAACUCCUCAAAAAAUCAUGCAGCGGAACCUUGUCAGGUAGAGAAGCCGUGCAUGAAAGAAUUUGUUUAAUGUCUUGUUUUGCGUAUGUGUUUUUUGUUUUUGUUUUUUAAGAACUAAAUAUUGCACAUUAAUAAAUAAGAAUUAUACAGCAGUGA
Sequence (MODOMICS CODE ENCODING) CGAAUCCCGUGUGCAGUCGCCCCGCGCCCCGCGCGACCCUUCGGGUAAACUACGAACUGGGAGUUCUGAAGAAUGGGUAAAGACUUUCGUUACUAUUUCCAGCAUCCCUGGUCUCGCAUGAUUGUGGCUUACUUGGUGAUCUUCUUUAACUUCUUAAUAUUUGCGGAGG2000000006ACCCAGUUUCUCAUAGCCAAACAGAAGCCAAUGUUAUUGUUGUUGGAA2000000006ACUGUUUUUCAUUUGUUACAAAUAAAUACCCUAGAGGAGUUGGCUGGAGGAUUUUGAAGGUGCUUCUAUGGCUACUUGCCAUUCUCACAGG2000000006ACUAAUAGCUGGCAAAUUUCUGUUCCAUCAGCGUUUGUUUGGUCAGUUGCUCCGAUUAAAAAUGUUUCGAGAAGAUCAUGGGUCGUGGAUGACAAUGUUCUUCAGCACAAUUCUCUUUCUCUUCAUAUUUUCUCACAUAUACAACACGAUUCUUCUAAUGGAUGGGAACAUGGGGUCACUGAUAUGAUGCUUCAGGACAAACCCUAUCCUGACUGGGGAAAAUCAGCAAGAGCUUUCUGGAAGAAAGGAAAUGUUAGGAUCACUUUAUUCUGGACAGUUCUUUUUACUCUGACGUCUGUGGUUGUACUUGUGAUUACAACGGACUGGAUCAGCUGGGACAAGCUGAAUCGGGGAUUUUUGCCCAGUGAUGAAGUUUCCAGAGCAUUCCUUGCUUCUUUUAUCUUGGUCUUUGACCUUCUUAUUGUGAUGCAGGACUGGGAAUUCCCACAUUUCAUGGGAGAUGUUGAUGUAAAUCUCCCUGGUUUGCACACCCCUCACAUGCAGUUCAAGAUUCCUUUCUUCCAGAAAAUCUUCAAGGAGGAAUAUCGUAUUCACAUAACAGGCAAAUGGUUUAACUAUGGAAUUAUCUUCCUCGUCUUGAUUUUGGAUCUUAAUAUGUGGAAGAACCAAAUAUUUUAUAAACCUCAUGAAUAUGGGCAAUAUAUCGGCCCGGGGCAGAAGAUAUAUACAGUGAAAGACUCAGAAAGUUUAAAAGAUUUGAACAGAACCAAGCUAUCCUGGGAAUGGAGGUCCAAUCACACUAACCCUCGG2000000006ACUAAUAAAACAUAUGUUGAGGGAGACAUGUUCUUACACAGCAGGUUCAUAGGAGCCAGUCUUGAUGUCAAGUGUCUGGCCUUUGUUCCAAGCCUGAUAGCCUUUGUGUGGUUUGGAUUCUUUAUUUGGUUCUUUGG2000000006ACGAUUUUUGAAAAAUGAGCCACGCAUGGAGAAUCAAGACAAAACUUACACUCGCAUGAAAAGAAAAUCUCCAUCAGAACAUAGCAAAGACAUGGGAAUCACUCGAGAAAACACCCAGGCUUCAGUAGAAGACCCCUUGAAUGACCCUUCUUUGGUUUGCAUCAGGUCUGACUUCAAUGAGAUCGUCUACAAGUCUUCCCACCUAACCUCGGAAAACUUGAGCUCACAGUUGAACGAAUCUACUAGUGCAACAGAAGCUGAUCAAGACCCAACGACUUCUAAAAGUACACCUACGA2000000006ACUAGACUCGGAGAUAG2000000006ACUUGGAGAUAACACAAAAAGCAACCUUGAGUGUAACUUUAAAAAUUUAGUCUUUCCUUUUGUAUAUGUAAGGUUUACGUAGUGUUAGGUAAAAAUAUGA2000000006ACAAUGCCACAACGGUGCUCAACAUGCUUUUUCUAGGAUUCAUUGUUUUCUAUUUGUAUUAUAAUACACGUGCCUACUGUAUACUCAACAGUCCUCUAGAGAUUGCUUUUCACAAUUGCACAAGCUAUUACUGACUUUACAGCAUAGUGGAAGAUUAGCUGAUGACCCAUGUAUCUGAUGUUCAACCAUAGUGGUGCCUUGAGACAUUAAACUGUUUUUAACUGUACCAGAAAUGAAGUGUGGAACAGUUACCUAACCUAUUUCACAUGGGCGUUUUGUAUACAACUAUUUUGAUCUACACUUGAUGUCUGAGCAGAAAACAGAAAUAGCUAAAUGUGACUCAGGAAGUAUCUCUUGGUUUCUUAUUCAGCAGCAGAGUUGGUGACUUUGACAACUGG2000000006ACUGCAGAGAAACAUGGUGAUCACCUUUUAAUUUUUAUUGGCUGUCUGCCAAAUAUAAAUACAGAUGCAAAAUUCAGUAAUAGGAGAUCCAUAACCCAACAUGGGUCACUACUCGUGAAAUGUG2000000006ACUUUCUCCCACCAGUAAUUGAAAUGAGGUGAUGAUACCUAAUUAUGUUUUCCUAAUUAAAGAUAAAUUGCUACUUGAUUAAAAAUCCUGCCCUUCACCUUUGGGAACAAAGGUUAAGAG2000000006ACACAGUUGGGCGA2000000006ACUCUCAAAUUUAUUGGCAUUUACACAAAGUCCCAGACAACCAAGGAACUGAAGUUUUCAUCAUAUGAGAGCAGCACAUCCCACCAUUUACAAUAUUCGUAUAUCUUUCUGCAAAUAUGGCUCUGGAUAGUGAAAAUUGAAAAACAUAUGCCAACCCUGAGCAAGGGAACUCCUCAAAAAAUCAUGCAGCGGAACCUUGUCAGGUAGAGAAGCCGUGCAUGAAAGAAUUUGUUUAAUGUCUUGUUUUGCGUAUGUGUUUUUUGUUUUUGUUUUUUAAGAACUAAAUAUUGCACAUUAAUAAAUAAGAAUUAUACAGCAGUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 170 218 309 1080 1217 1513 1530 1630 2028 2152 2272 2286
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 12:43844749:+ 12:43844797:+ 12:43844888:+ 12:44388235:+ 12:44388372:+ 12:44388668:+ 12:44388685:+ 12:44388785:+ 12:44389183:+ 12:44389307:+ 12:44389427:+ 12:44389441:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
Lny8GcCeVGc9
UKen6WEino9G
6UuHp6YApVKv
jNkxUQNx8GRd
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
msuJfBpJvM5H
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
6AyXsheySjfx
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq