Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000542262
Gene ID: ENSG00000110906
Gene Name: KCTD10
Sequence (UNICHARACTER ENCODING) CUCUCAGUCCGGGUUUGGAGACUCCUGCGUCCUCCGACUUUUCAUGGAAGAGAUGUCAGGAGAAAGUGUGGUGAGCUCAGCGGUGCCAGCGGCUGCUACCCGCACCACUUCCUUCAAGGGCACGAGCCCCAGCUCCAAAUACGUGAAGCUGAAUGUGGGUGGAGCCCUCUACUAUACCACCAUGCAGACGCUGACCAAGCAGGACACCAUGCUGAAGGCCAUGUUCAGCGGGCGCAUGGAAGUGCUCACCGACAGUGAAGGCUGGAUCCUCAUUGACCGCUGUGGGAAGCACUUUGGUACGAUACUCAACUACCUUCGAGACGGGGCGGUGCCUPUACCCGAGAGCCGCCGGGAGAUCGAGGAGCUGCUAGCAGAAGCCAAGUACUACCUAGUCCAAGGCCUGGUGGAAGAGUGCCAGGCGGCCCUACAACCAGCCGUGAAGUUGCUCUACAACAGAAGUAACAACAAAUACUCAUAUACCAGCAAUUCUGACGACAAUAUGUUGAAAAACAUUGAЖCUGUUUGAUAAGCUGUCUCUGCGCUPUAACGGAAGGG
Sequence (SHORT NAMES ENCODING) CUCUCAGUCCGGGUUUGGAGACUCCUGCGUCCUCCGACUUUUCAUGGAAGAGAUGUCAGGAGAAAGUGUGGUGAGCUCAGCGGUGCCAGCGGCUGCUACCCGCACCACUUCCUUCAAGGGCACGAGCCCCAGCUCCAAAUACGUGAAGCUGAAUGUGGGUGGAGCCCUCUACUAUACCACCAUGCAGACGCUGACCAAGCAGGACACCAUGCUGAAGGCCAUGUUCAGCGGGCGCAUGGAAGUGCUCACCGACAGUGAAGGCUGGAUCCUCAUUGACCGCUGUGGGAAGCACUUUGGUACGAUACUCAACUACCUUCGAGACGGGGCGGUGCCUYUACCCGAGAGCCGCCGGGAGAUCGAGGAGCUGCUAGCAGAAGCCAAGUACUACCUAGUCCAAGGCCUGGUGGAAGAGUGCCAGGCGGCCCUACAACCAGCCGUGAAGUUGCUCUACAACAGAAGUAACAACAAAUACUCAUAUACCAGCAAUUCUGACGACAAUAUGUUGAAAAACAUUGAm6ACUGUUUGAUAAGCUGUCUCUGCGCUYUAACGGAAGGG
Sequence (MODOMICS CODE ENCODING) CUCUCAGUCCGGGUUUGGAGACUCCUGCGUCCUCCGACUUUUCAUGGAAGAGAUGUCAGGAGAAAGUGUGGUGAGCUCAGCGGUGCCAGCGGCUGCUACCCGCACCACUUCCUUCAAGGGCACGAGCCCCAGCUCCAAAUACGUGAAGCUGAAUGUGGGUGGAGCCCUCUACUAUACCACCAUGCAGACGCUGACCAAGCAGGACACCAUGCUGAAGGCCAUGUUCAGCGGGCGCAUGGAAGUGCUCACCGACAGUGAAGGCUGGAUCCUCAUUGACCGCUGUGGGAAGCACUUUGGUACGAUACUCAACUACCUUCGAGACGGGGCGGUGCCU2000000009UUACCCGAGAGCCGCCGGGAGAUCGAGGAGCUGCUAGCAGAAGCCAAGUACUACCUAGUCCAAGGCCUGGUGGAAGAGUGCCAGGCGGCCCUACAACCAGCCGUGAAGUUGCUCUACAACAGAAGUAACAACAAAUACUCAUAUACCAGCAAUUCUGACGACAAUAUGUUGAAAAACAUUGA2000000006ACUGUUUGAUAAGCUGUCUCUGCGCU2000000009UUAACGGAAGGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 335 517 543
Modification Positions Y m6A Y
Genomic Coordinates 12:109460731:- 12:109456280:- 12:109456254:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8