Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000468231
Gene ID: ENSG00000002016
Gene Name: RAD52
Sequence (UNICHARACTER ENCODING) GAUCGAGCUCCCUGUGUGCACCGCGCGCUGCCCGAGGCGCCCCAGUGACAGCUGGAGUGGACAAAGUGACCAAGGGCCUCAAGGACACACAAGGCCAAGAAGAUUUGAAGUGCUGUAGGUCAACCAGAAUCAAGAUGUCUGGGACUGAGGAAGCAAUUCUUGGAGGACGUGACAGCCAUCCUGCUGCUGGCGGCGGCUCAGUGUUAUGCUUUGGACAGUGCCAGUACACAGCAGAAGAGUACCAGGCCAUCCAGAAGGCCCUGAGGCAGAGGCUGGGCCCAGAAUACAUAAGUAGCCGCAUGGCUGGCGGAGGCCAGAAGGUGUGCUACAUUGAGGGUCAUCGGGUAAUUAAUCUGGCCAAUGAGAUGUUUGGUUACAAUGGCUGGGCACACUCCAUCACGCAGCAGAAUGUGGAUUUUGUUGACCUCAACAAUGGCAAGUUCUACGUGGGAGUCUGUGCAUUUGUGAGGGUCCAGCUGAAGGUGAGGGGAUGGAGUAGACCUGCUGCCCGGAAGGAUCAGUGGGUGGUAGGAGAAGGAUGGUUCAUAUCAUGAAGAUGUUGGUUAUGGUGUUAGUGAGGGCCUCAAGUCCAAGGCUUUAUCUUUGGAGAAGGCAAGGAAGGAGGCGGUGACAGACGGGCUGAAGCGAGCCCUCAGGCUUCCCUUGCUGGGAGUAAGUGGUAGAAUCCUGUACUCUCUCUUCUCCGUGCACUCAGUCAUGUGUGCCGGAGGCCUUCCCACUCCUACUGCGAGUGCACAGACAGCACCCUCCUCUCCGUGCUCCUCAGCAGUCCUCCGCUACGCACAGGAGUUUUGGGAAUGCACUUGGAAACUGUAUUCUGGACAAAGACUACCUGAGAUCACUAAAUAAGCUUCCACGCCAGUUGCCUCUUGAAGUGGAUUUAACUAAAGCGAAGAGACAAGAUCUUGAACCGUCUGUGGAGGAGGCAAGAUACAACAGCUGCCGACCGAACAUGGCCCUGGGACACCCACAGCUGCAGCAGGUGACCUCCCCUUCCAGACCCAGCCAUGCUGUGAUACCGGCGGACCAGGACUGCAGCUCCCGAAGCCUGAGCUCAUCCGCCGUGGAGAGCGAGGCCACGCACCAGCGGAAGCUCCGGCAGAAGCAGCUGCAGCAGCAGUUCCGGGAGCGGAUGGAGAAGCAGCAGGUUCGAGUCUCCACGCCGUCAGCUGAGAAGAGUGAGGCAGCGCCUCCGGCCCCUCCUGUGACGCACAGCACUCCUGUAACUGUCUCAGAACCACUCCUGGAGAAAGACUUCCUUGCAGGAGUGACUCAAGAAUUAAUCAAGACUCUUGAAGACAACUCUGAAAAGUGGGCUGUGACUCCCGAUGCAGGGGAUGGUGUGGUCAAGCCCUCGUCUAGAGCAGACCCAGCCCAGACCUCUGACACAUUAGCCUUGAACAACCAGAUGGUGACCCAGAACAGGACUCCACACAGCGUUUGCCACCAGAAACCACAAGCAAAAUCUGGAUCUUGGGACCUCCAAACUUAUAGCGCUGACCAACGCACAACAGGAAACUGGGAAUCUCAUAGGAAGAGCCAGGACAUGAAGAAAAGGAAAUAUGAUCCAUCUUAACUGAGGCUCAGGCCACAUAAUUGGЖCUCUGUCACAAAGGGЖCUUUGGAAAACUACUUUUUGGUCAUGAAAUUGUUCAUCGCUGCUGGAGAAUGAACGUCAUUGCGAUUUAUCUUGCUUCAUUCUGAACCUUAUCAAGAGGAUCUGACUGAGAGCCCACUGCAGUUAGAGCUGAGCACUUUUGAAAAGCUUGUCCAUCACUCUAGUAGGGAGAGGCUCUGGЖCAGAUGAAUACCUUUUCUUCGGCUUGUGAGGCUUCCCACUAUUUAUUACUGAЖCUAUUAUGUUAAUGAAGAUGGЖCAUUUUAGGAAUCACCAAUGGCUCCUUGCCCUCAAGCAAUAUAGGCCAGACUUGGUCCUAAGCACCUGCCUCAGCAAUUGUCUACAUUCAGUUGUUUUGCAUAACGUCUGCCUUCUUUCCUUUACGGUCCAUGCCUUUAAUGUUGCCCACAUUAAGCACUGUGGAUCACGACAGGAAAAAGGUUGGAGCAGUGCUUUUCACUACUUUGUAUCAAUCCAGGCUACAAUCUUCAUUUAAUAUAAAUAAUUUAUGGЖUUUAUGACAUUACAAUCCUGCAUUGUUUCAAGACUGACAUUUUUUCCUAAGGAAGGAAAUAAUCAUCUAAGACCACGAAAAAAGGCUGUUUUUUGUUUUUUUUUUUUUUUUUUUUUUUGAGACGGGGUCUGGCUGUGUUGCCCUGACUGGAGUUCAGUGGUGCAAACACAGCUCUCUCCACAACCUCUUGGGCCCAAGUGAUACUCCCACCUCUGCCUUACAAAAUACAGGGAUUACUGGUGUGAGCCACUGUGUCUGGCCAGAAAAGGCAUUUUUGAGAAAGCAAAUCGUAUACCUUAUUAACAAAAUAGAAUAUAUAUAUAUUGCUUAUCUGAAAUGCUUGAAACCAGAA
Sequence (SHORT NAMES ENCODING) GAUCGAGCUCCCUGUGUGCACCGCGCGCUGCCCGAGGCGCCCCAGUGACAGCUGGAGUGGACAAAGUGACCAAGGGCCUCAAGGACACACAAGGCCAAGAAGAUUUGAAGUGCUGUAGGUCAACCAGAAUCAAGAUGUCUGGGACUGAGGAAGCAAUUCUUGGAGGACGUGACAGCCAUCCUGCUGCUGGCGGCGGCUCAGUGUUAUGCUUUGGACAGUGCCAGUACACAGCAGAAGAGUACCAGGCCAUCCAGAAGGCCCUGAGGCAGAGGCUGGGCCCAGAAUACAUAAGUAGCCGCAUGGCUGGCGGAGGCCAGAAGGUGUGCUACAUUGAGGGUCAUCGGGUAAUUAAUCUGGCCAAUGAGAUGUUUGGUUACAAUGGCUGGGCACACUCCAUCACGCAGCAGAAUGUGGAUUUUGUUGACCUCAACAAUGGCAAGUUCUACGUGGGAGUCUGUGCAUUUGUGAGGGUCCAGCUGAAGGUGAGGGGAUGGAGUAGACCUGCUGCCCGGAAGGAUCAGUGGGUGGUAGGAGAAGGAUGGUUCAUAUCAUGAAGAUGUUGGUUAUGGUGUUAGUGAGGGCCUCAAGUCCAAGGCUUUAUCUUUGGAGAAGGCAAGGAAGGAGGCGGUGACAGACGGGCUGAAGCGAGCCCUCAGGCUUCCCUUGCUGGGAGUAAGUGGUAGAAUCCUGUACUCUCUCUUCUCCGUGCACUCAGUCAUGUGUGCCGGAGGCCUUCCCACUCCUACUGCGAGUGCACAGACAGCACCCUCCUCUCCGUGCUCCUCAGCAGUCCUCCGCUACGCACAGGAGUUUUGGGAAUGCACUUGGAAACUGUAUUCUGGACAAAGACUACCUGAGAUCACUAAAUAAGCUUCCACGCCAGUUGCCUCUUGAAGUGGAUUUAACUAAAGCGAAGAGACAAGAUCUUGAACCGUCUGUGGAGGAGGCAAGAUACAACAGCUGCCGACCGAACAUGGCCCUGGGACACCCACAGCUGCAGCAGGUGACCUCCCCUUCCAGACCCAGCCAUGCUGUGAUACCGGCGGACCAGGACUGCAGCUCCCGAAGCCUGAGCUCAUCCGCCGUGGAGAGCGAGGCCACGCACCAGCGGAAGCUCCGGCAGAAGCAGCUGCAGCAGCAGUUCCGGGAGCGGAUGGAGAAGCAGCAGGUUCGAGUCUCCACGCCGUCAGCUGAGAAGAGUGAGGCAGCGCCUCCGGCCCCUCCUGUGACGCACAGCACUCCUGUAACUGUCUCAGAACCACUCCUGGAGAAAGACUUCCUUGCAGGAGUGACUCAAGAAUUAAUCAAGACUCUUGAAGACAACUCUGAAAAGUGGGCUGUGACUCCCGAUGCAGGGGAUGGUGUGGUCAAGCCCUCGUCUAGAGCAGACCCAGCCCAGACCUCUGACACAUUAGCCUUGAACAACCAGAUGGUGACCCAGAACAGGACUCCACACAGCGUUUGCCACCAGAAACCACAAGCAAAAUCUGGAUCUUGGGACCUCCAAACUUAUAGCGCUGACCAACGCACAACAGGAAACUGGGAAUCUCAUAGGAAGAGCCAGGACAUGAAGAAAAGGAAAUAUGAUCCAUCUUAACUGAGGCUCAGGCCACAUAAUUGGm6ACUCUGUCACAAAGGGm6ACUUUGGAAAACUACUUUUUGGUCAUGAAAUUGUUCAUCGCUGCUGGAGAAUGAACGUCAUUGCGAUUUAUCUUGCUUCAUUCUGAACCUUAUCAAGAGGAUCUGACUGAGAGCCCACUGCAGUUAGAGCUGAGCACUUUUGAAAAGCUUGUCCAUCACUCUAGUAGGGAGAGGCUCUGGm6ACAGAUGAAUACCUUUUCUUCGGCUUGUGAGGCUUCCCACUAUUUAUUACUGAm6ACUAUUAUGUUAAUGAAGAUGGm6ACAUUUUAGGAAUCACCAAUGGCUCCUUGCCCUCAAGCAAUAUAGGCCAGACUUGGUCCUAAGCACCUGCCUCAGCAAUUGUCUACAUUCAGUUGUUUUGCAUAACGUCUGCCUUCUUUCCUUUACGGUCCAUGCCUUUAAUGUUGCCCACAUUAAGCACUGUGGAUCACGACAGGAAAAAGGUUGGAGCAGUGCUUUUCACUACUUUGUAUCAAUCCAGGCUACAAUCUUCAUUUAAUAUAAAUAAUUUAUGGm6AUUUAUGACAUUACAAUCCUGCAUUGUUUCAAGACUGACAUUUUUUCCUAAGGAAGGAAAUAAUCAUCUAAGACCACGAAAAAAGGCUGUUUUUUGUUUUUUUUUUUUUUUUUUUUUUUGAGACGGGGUCUGGCUGUGUUGCCCUGACUGGAGUUCAGUGGUGCAAACACAGCUCUCUCCACAACCUCUUGGGCCCAAGUGAUACUCCCACCUCUGCCUUACAAAAUACAGGGAUUACUGGUGUGAGCCACUGUGUCUGGCCAGAAAAGGCAUUUUUGAGAAAGCAAAUCGUAUACCUUAUUAACAAAAUAGAAUAUAUAUAUAUUGCUUAUCUGAAAUGCUUGAAACCAGAA
Sequence (MODOMICS CODE ENCODING) GAUCGAGCUCCCUGUGUGCACCGCGCGCUGCCCGAGGCGCCCCAGUGACAGCUGGAGUGGACAAAGUGACCAAGGGCCUCAAGGACACACAAGGCCAAGAAGAUUUGAAGUGCUGUAGGUCAACCAGAAUCAAGAUGUCUGGGACUGAGGAAGCAAUUCUUGGAGGACGUGACAGCCAUCCUGCUGCUGGCGGCGGCUCAGUGUUAUGCUUUGGACAGUGCCAGUACACAGCAGAAGAGUACCAGGCCAUCCAGAAGGCCCUGAGGCAGAGGCUGGGCCCAGAAUACAUAAGUAGCCGCAUGGCUGGCGGAGGCCAGAAGGUGUGCUACAUUGAGGGUCAUCGGGUAAUUAAUCUGGCCAAUGAGAUGUUUGGUUACAAUGGCUGGGCACACUCCAUCACGCAGCAGAAUGUGGAUUUUGUUGACCUCAACAAUGGCAAGUUCUACGUGGGAGUCUGUGCAUUUGUGAGGGUCCAGCUGAAGGUGAGGGGAUGGAGUAGACCUGCUGCCCGGAAGGAUCAGUGGGUGGUAGGAGAAGGAUGGUUCAUAUCAUGAAGAUGUUGGUUAUGGUGUUAGUGAGGGCCUCAAGUCCAAGGCUUUAUCUUUGGAGAAGGCAAGGAAGGAGGCGGUGACAGACGGGCUGAAGCGAGCCCUCAGGCUUCCCUUGCUGGGAGUAAGUGGUAGAAUCCUGUACUCUCUCUUCUCCGUGCACUCAGUCAUGUGUGCCGGAGGCCUUCCCACUCCUACUGCGAGUGCACAGACAGCACCCUCCUCUCCGUGCUCCUCAGCAGUCCUCCGCUACGCACAGGAGUUUUGGGAAUGCACUUGGAAACUGUAUUCUGGACAAAGACUACCUGAGAUCACUAAAUAAGCUUCCACGCCAGUUGCCUCUUGAAGUGGAUUUAACUAAAGCGAAGAGACAAGAUCUUGAACCGUCUGUGGAGGAGGCAAGAUACAACAGCUGCCGACCGAACAUGGCCCUGGGACACCCACAGCUGCAGCAGGUGACCUCCCCUUCCAGACCCAGCCAUGCUGUGAUACCGGCGGACCAGGACUGCAGCUCCCGAAGCCUGAGCUCAUCCGCCGUGGAGAGCGAGGCCACGCACCAGCGGAAGCUCCGGCAGAAGCAGCUGCAGCAGCAGUUCCGGGAGCGGAUGGAGAAGCAGCAGGUUCGAGUCUCCACGCCGUCAGCUGAGAAGAGUGAGGCAGCGCCUCCGGCCCCUCCUGUGACGCACAGCACUCCUGUAACUGUCUCAGAACCACUCCUGGAGAAAGACUUCCUUGCAGGAGUGACUCAAGAAUUAAUCAAGACUCUUGAAGACAACUCUGAAAAGUGGGCUGUGACUCCCGAUGCAGGGGAUGGUGUGGUCAAGCCCUCGUCUAGAGCAGACCCAGCCCAGACCUCUGACACAUUAGCCUUGAACAACCAGAUGGUGACCCAGAACAGGACUCCACACAGCGUUUGCCACCAGAAACCACAAGCAAAAUCUGGAUCUUGGGACCUCCAAACUUAUAGCGCUGACCAACGCACAACAGGAAACUGGGAAUCUCAUAGGAAGAGCCAGGACAUGAAGAAAAGGAAAUAUGAUCCAUCUUAACUGAGGCUCAGGCCACAUAAUUGG2000000006ACUCUGUCACAAAGGG2000000006ACUUUGGAAAACUACUUUUUGGUCAUGAAAUUGUUCAUCGCUGCUGGAGAAUGAACGUCAUUGCGAUUUAUCUUGCUUCAUUCUGAACCUUAUCAAGAGGAUCUGACUGAGAGCCCACUGCAGUUAGAGCUGAGCACUUUUGAAAAGCUUGUCCAUCACUCUAGUAGGGAGAGGCUCUGG2000000006ACAGAUGAAUACCUUUUCUUCGGCUUGUGAGGCUUCCCACUAUUUAUUACUGA2000000006ACUAUUAUGUUAAUGAAGAUGG2000000006ACAUUUUAGGAAUCACCAAUGGCUCCUUGCCCUCAAGCAAUAUAGGCCAGACUUGGUCCUAAGCACCUGCCUCAGCAAUUGUCUACAUUCAGUUGUUUUGCAUAACGUCUGCCUUCUUUCCUUUACGGUCCAUGCCUUUAAUGUUGCCCACAUUAAGCACUGUGGAUCACGACAGGAAAAAGGUUGGAGCAGUGCUUUUCACUACUUUGUAUCAAUCCAGGCUACAAUCUUCAUUUAAUAUAAAUAAUUUAUGG2000000006AUUUAUGACAUUACAAUCCUGCAUUGUUUCAAGACUGACAUUUUUUCCUAAGGAAGGAAAUAAUCAUCUAAGACCACGAAAAAAGGCUGUUUUUUGUUUUUUUUUUUUUUUUUUUUUUUGAGACGGGGUCUGGCUGUGUUGCCCUGACUGGAGUUCAGUGGUGCAAACACAGCUCUCUCCACAACCUCUUGGGCCCAAGUGAUACUCCCACCUCUGCCUUACAAAAUACAGGGAUUACUGGUGUGAGCCACUGUGUCUGGCCAGAAAAGGCAUUUUUGAGAAAGCAAAUCGUAUACCUUAUUAACAAAAUAGAAUAUAUAUAUAUUGCUUAUCUGAAAUGCUUGAAACCAGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1622 1638 1818 1871 1893 2147
Modification Positions m6A m6A m6A m6A m6A m6A
Genomic Coordinates 12:913366:- 12:913350:- 12:913170:- 12:913117:- 12:913095:- 12:912841:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BkoLW2CBToyL
Lny8GcCeVGc9
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
Lny8GcCeVGc9
5Nnepx5V7yHo
6UuHp6YApVKv
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
8cMbzB4aD5Se
BkoLW2CBToyL
Lny8GcCeVGc9
UKen6WEino9G
Lny8GcCeVGc9
UKen6WEino9G