General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000543633
Gene ID:	ENSG00000139719
Gene Name:	VPS33A
Sequence (UNICHARACTER ENCODING)	GGCGUUGUGGGGCAGGGGGUGGUGGAGCAAGAUGGCGGCUCAUCUGUCCUACGGCCGAGUGAACCUAAACGUGUUGCGCGAGGCGGUGCGUCGCGAGCUGCGCGAGUUCCUGGACAAGUGCGCAGGAAGCAAGGGUUUAUCAGUCACCCUAAGUUACUGACAGUACAACUGUGAAAAGUCGAACUGGGGAGCCUCAGUCUUGUAGAGAACAGAACCCCAAGAGGCAAUAGUUUGGGAUGAAUACCUAЖCUGGACCCUUUGGCCUGAUUGCACAGUAUUCACUAUUGAAGGAACAUGAAGUGGAAAAAAUGUUCACACUUAAAGGAAAUCGUUUGCCGGCAGCUGAUGUGAAGAAUAUAAUUUUUUUUGUCAGACCCAGGCUAGAGUUGAUGGAUAUAAUCGCUGAAAACGUGCUCAGUGAAGAUAGACGAGGCCCAACGAGAGAUUUUCAUAUUCUGUUUGUGCCACGCCGUAGCCUGUUGUGCGAACAGCGGUUGAAGGAUCUGGGUGUCUUGGGAUCCUPUAUUCACAGGGAGGAGUACAGCUUAGAUCUCAUUCCAUUCGAUGGGGAUCUCUUAUCCAUGGAAUCAGAGGGUGCAUUCAAAGAGUGCUACCUGGAGGGUGACCAGACGAGCCUGUACCACGCAGCCAAGGGGCUGAUGACCCUGCAAGCUCUGUAUGGAACGAUCCCCCAGAUCUUUGGGAAAGGAGAAUGCGCUCGGCAAGUGGCCAAUAUGAUGAUCAGGAUGAAGAGAGAGUUUACAGGAAGCCAGAAUUCAAUAUUUCCUGUUUUUGAUAAUCUCUUGUUGCUUGAUCGGAAUGUGGAUUUAUUAACACCUCUUGCCACUCAGCUGACAUAUGAAGGACUCAUUGAUGAAAUUUAUGGCAUUCAGAACAGUUAUGUGAAAUUACCUCCAGAGAAAUUUGCACCUAAGAAACAGGGCGAUGGUGGUAAGGACCUCCCCACGGAAGCAAAGAAGCUGCAGCUGAAUUCUGCAGAGGAGCUCUAUGCUGAGAUCCGAGAUAAGAACUUCAACGCAGUUGGCUCUGUGCUCAGCAAGAAAGCAAAGAUCAUCUCUGCAGCAUUCGAGGAAAGACACAAUGCUAAGЖCCGUGGGGGAGAUCAAGCAGUUUGUUUCCCAGUUGCCCCACAUGCAGGCAGCAAGGGGCUCGCUUGCAAACCAUACCUCAAUUGCAGAAUUGAUCAAAGAUGUCACUACUUCUGAAGACUUUUUUGAUAAAUUAACCGUGGAACAGGAGUUUAUGUCUGGAAUAGACACUGAUAAGGUCAACAAUUACAUUGAGGAUUGUAUCGCCCAAAAGCACUCGUUGAUCAAGGUGUUAAGACUAGUUUGCCUCCAAUCCGUGUGUAAUAGUGGGCUCAAЖCAAAAAGUUUUGGAUUAUUACAAAAGAGAGAUUCUCCAGACAUACGGCUAUGAGCACAUAUUGACCUUACACAACCUGGAGAAGGCCGGCCUGCUGAAACCGCAGACGGGGGGCAGAAЖCAAUUACCCAACUAUACGGAAAACAUUACGCCUCUGGAUGGAUGAUGUUAAUGAGCAAAACCCCACGGACAUAUCGUAUGUGUACAGUGGGUAUGCCCCGCUCAGUGUGCGGCUGGCCCAGCUGCUUUCCCGGCCUGGCUGGCGGAGCAUCGAGGAGGUCCPCCGCAUCCUCCCAGGGCCCCACUUUGAGGAGCGGCAGCCACUGCCCACAGGACUGCAGAAGAAACGUCAACCGGGAGAAAACCGAGUGACUCUGAUAUUUUUCCUUGGGGGCGUAACCUUCGCUGAAAUUGCUGCCCUGCGAUUUCUCUCCCAGUUGGAAGAUGGAGGUACAGAAUAUGUCAUUGCCACCACUAAACUAAUGAAUGGAACCAGUUGGAUAGAGGCUCUGAUGGAAAAACCUUUCUAGGAUGUPCAGAGGAGЖCUUAЖCAAGUGUACUGCAGAAUAAACUACCUCUUUGAAGAAAUUGCUGAAAGGAAGUAAAACCCCAUAGAAGAAACAUGGGAAUACAGAAUA
Sequence (SHORT NAMES ENCODING)	GGCGUUGUGGGGCAGGGGGUGGUGGAGCAAGAUGGCGGCUCAUCUGUCCUACGGCCGAGUGAACCUAAACGUGUUGCGCGAGGCGGUGCGUCGCGAGCUGCGCGAGUUCCUGGACAAGUGCGCAGGAAGCAAGGGUUUAUCAGUCACCCUAAGUUACUGACAGUACAACUGUGAAAAGUCGAACUGGGGAGCCUCAGUCUUGUAGAGAACAGAACCCCAAGAGGCAAUAGUUUGGGAUGAAUACCUAm6ACUGGACCCUUUGGCCUGAUUGCACAGUAUUCACUAUUGAAGGAACAUGAAGUGGAAAAAAUGUUCACACUUAAAGGAAAUCGUUUGCCGGCAGCUGAUGUGAAGAAUAUAAUUUUUUUUGUCAGACCCAGGCUAGAGUUGAUGGAUAUAAUCGCUGAAAACGUGCUCAGUGAAGAUAGACGAGGCCCAACGAGAGAUUUUCAUAUUCUGUUUGUGCCACGCCGUAGCCUGUUGUGCGAACAGCGGUUGAAGGAUCUGGGUGUCUUGGGAUCCUYUAUUCACAGGGAGGAGUACAGCUUAGAUCUCAUUCCAUUCGAUGGGGAUCUCUUAUCCAUGGAAUCAGAGGGUGCAUUCAAAGAGUGCUACCUGGAGGGUGACCAGACGAGCCUGUACCACGCAGCCAAGGGGCUGAUGACCCUGCAAGCUCUGUAUGGAACGAUCCCCCAGAUCUUUGGGAAAGGAGAAUGCGCUCGGCAAGUGGCCAAUAUGAUGAUCAGGAUGAAGAGAGAGUUUACAGGAAGCCAGAAUUCAAUAUUUCCUGUUUUUGAUAAUCUCUUGUUGCUUGAUCGGAAUGUGGAUUUAUUAACACCUCUUGCCACUCAGCUGACAUAUGAAGGACUCAUUGAUGAAAUUUAUGGCAUUCAGAACAGUUAUGUGAAAUUACCUCCAGAGAAAUUUGCACCUAAGAAACAGGGCGAUGGUGGUAAGGACCUCCCCACGGAAGCAAAGAAGCUGCAGCUGAAUUCUGCAGAGGAGCUCUAUGCUGAGAUCCGAGAUAAGAACUUCAACGCAGUUGGCUCUGUGCUCAGCAAGAAAGCAAAGAUCAUCUCUGCAGCAUUCGAGGAAAGACACAAUGCUAAGm6ACCGUGGGGGAGAUCAAGCAGUUUGUUUCCCAGUUGCCCCACAUGCAGGCAGCAAGGGGCUCGCUUGCAAACCAUACCUCAAUUGCAGAAUUGAUCAAAGAUGUCACUACUUCUGAAGACUUUUUUGAUAAAUUAACCGUGGAACAGGAGUUUAUGUCUGGAAUAGACACUGAUAAGGUCAACAAUUACAUUGAGGAUUGUAUCGCCCAAAAGCACUCGUUGAUCAAGGUGUUAAGACUAGUUUGCCUCCAAUCCGUGUGUAAUAGUGGGCUCAAm6ACAAAAAGUUUUGGAUUAUUACAAAAGAGAGAUUCUCCAGACAUACGGCUAUGAGCACAUAUUGACCUUACACAACCUGGAGAAGGCCGGCCUGCUGAAACCGCAGACGGGGGGCAGAAm6ACAAUUACCCAACUAUACGGAAAACAUUACGCCUCUGGAUGGAUGAUGUUAAUGAGCAAAACCCCACGGACAUAUCGUAUGUGUACAGUGGGUAUGCCCCGCUCAGUGUGCGGCUGGCCCAGCUGCUUUCCCGGCCUGGCUGGCGGAGCAUCGAGGAGGUCCYCCGCAUCCUCCCAGGGCCCCACUUUGAGGAGCGGCAGCCACUGCCCACAGGACUGCAGAAGAAACGUCAACCGGGAGAAAACCGAGUGACUCUGAUAUUUUUCCUUGGGGGCGUAACCUUCGCUGAAAUUGCUGCCCUGCGAUUUCUCUCCCAGUUGGAAGAUGGAGGUACAGAAUAUGUCAUUGCCACCACUAAACUAAUGAAUGGAACCAGUUGGAUAGAGGCUCUGAUGGAAAAACCUUUCUAGGAUGUYCAGAGGAGm6ACUUAm6ACAAGUGUACUGCAGAAUAAACUACCUCUUUGAAGAAAUUGCUGAAAGGAAGUAAAACCCCAUAGAAGAAACAUGGGAAUACAGAAUA
Sequence (MODOMICS CODE ENCODING)	GGCGUUGUGGGGCAGGGGGUGGUGGAGCAAGAUGGCGGCUCAUCUGUCCUACGGCCGAGUGAACCUAAACGUGUUGCGCGAGGCGGUGCGUCGCGAGCUGCGCGAGUUCCUGGACAAGUGCGCAGGAAGCAAGGGUUUAUCAGUCACCCUAAGUUACUGACAGUACAACUGUGAAAAGUCGAACUGGGGAGCCUCAGUCUUGUAGAGAACAGAACCCCAAGAGGCAAUAGUUUGGGAUGAAUACCUA2000000006ACUGGACCCUUUGGCCUGAUUGCACAGUAUUCACUAUUGAAGGAACAUGAAGUGGAAAAAAUGUUCACACUUAAAGGAAAUCGUUUGCCGGCAGCUGAUGUGAAGAAUAUAAUUUUUUUUGUCAGACCCAGGCUAGAGUUGAUGGAUAUAAUCGCUGAAAACGUGCUCAGUGAAGAUAGACGAGGCCCAACGAGAGAUUUUCAUAUUCUGUUUGUGCCACGCCGUAGCCUGUUGUGCGAACAGCGGUUGAAGGAUCUGGGUGUCUUGGGAUCCU2000000009UUAUUCACAGGGAGGAGUACAGCUUAGAUCUCAUUCCAUUCGAUGGGGAUCUCUUAUCCAUGGAAUCAGAGGGUGCAUUCAAAGAGUGCUACCUGGAGGGUGACCAGACGAGCCUGUACCACGCAGCCAAGGGGCUGAUGACCCUGCAAGCUCUGUAUGGAACGAUCCCCCAGAUCUUUGGGAAAGGAGAAUGCGCUCGGCAAGUGGCCAAUAUGAUGAUCAGGAUGAAGAGAGAGUUUACAGGAAGCCAGAAUUCAAUAUUUCCUGUUUUUGAUAAUCUCUUGUUGCUUGAUCGGAAUGUGGAUUUAUUAACACCUCUUGCCACUCAGCUGACAUAUGAAGGACUCAUUGAUGAAAUUUAUGGCAUUCAGAACAGUUAUGUGAAAUUACCUCCAGAGAAAUUUGCACCUAAGAAACAGGGCGAUGGUGGUAAGGACCUCCCCACGGAAGCAAAGAAGCUGCAGCUGAAUUCUGCAGAGGAGCUCUAUGCUGAGAUCCGAGAUAAGAACUUCAACGCAGUUGGCUCUGUGCUCAGCAAGAAAGCAAAGAUCAUCUCUGCAGCAUUCGAGGAAAGACACAAUGCUAAG2000000006ACCGUGGGGGAGAUCAAGCAGUUUGUUUCCCAGUUGCCCCACAUGCAGGCAGCAAGGGGCUCGCUUGCAAACCAUACCUCAAUUGCAGAAUUGAUCAAAGAUGUCACUACUUCUGAAGACUUUUUUGAUAAAUUAACCGUGGAACAGGAGUUUAUGUCUGGAAUAGACACUGAUAAGGUCAACAAUUACAUUGAGGAUUGUAUCGCCCAAAAGCACUCGUUGAUCAAGGUGUUAAGACUAGUUUGCCUCCAAUCCGUGUGUAAUAGUGGGCUCAA2000000006ACAAAAAGUUUUGGAUUAUUACAAAAGAGAGAUUCUCCAGACAUACGGCUAUGAGCACAUAUUGACCUUACACAACCUGGAGAAGGCCGGCCUGCUGAAACCGCAGACGGGGGGCAGAA2000000006ACAAUUACCCAACUAUACGGAAAACAUUACGCCUCUGGAUGGAUGAUGUUAAUGAGCAAAACCCCACGGACAUAUCGUAUGUGUACAGUGGGUAUGCCCCGCUCAGUGUGCGGCUGGCCCAGCUGCUUUCCCGGCCUGGCUGGCGGAGCAUCGAGGAGGUCC2000000009UCCGCAUCCUCCCAGGGCCCCACUUUGAGGAGCGGCAGCCACUGCCCACAGGACUGCAGAAGAAACGUCAACCGGGAGAAAACCGAGUGACUCUGAUAUUUUUCCUUGGGGGCGUAACCUUCGCUGAAAUUGCUGCCCUGCGAUUUCUCUCCCAGUUGGAAGAUGGAGGUACAGAAUAUGUCAUUGCCACCACUAAACUAAUGAAUGGAACCAGUUGGAUAGAGGCUCUGAUGGAAAAACCUUUCUAGGAUGU2000000009UCAGAGGAG2000000006ACUUA2000000006ACAAGUGUACUGCAGAAUAAACUACCUCUUUGAAGAAAUUGCUGAAAGGAAGUAAAACCCCAUAGAAGAAACAUGGGAAUACAGAAUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	248	522	1109	1384	1503	1665	1918	1927	1932
Modification Positions	m6A	Y	m6A	m6A	m6A	Y	Um	m6A	m6A
Genomic Coordinates	12:122264175:-	12:122261343:-	12:122242490:-	12:122238626:-	12:122235844:-	12:122232865:-	12:122232240:-	12:122232231:-	12:122232226:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	nfCHyrYzE6fB BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se BkoLW2CBToyL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8