Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000548305
Gene ID: ENSG00000179104
Gene Name: TMTC2
Sequence (UNICHARACTER ENCODING) GGGAGCUAAUAAACAUUGAAUGUGCAGCAGCUGCCUUGGCGGCCGGAGUCCGCCCGAGCGACACCGGAGCAGUGCGCCCGGGAGGCGGCGAGGGGAGGCGGUUCGCCUUGUCCCUCCCACCCGCGCCUCUUUCUCUCUCUUCCUCCAGCUGGUCCCAGAGCCCGGCUUGGUCCGGUCCCUCUGCCCCCAUCCCGCACCCUUCCACCUCCUCCGAGUCCCACUCCUCACCUAGGACGCCCCAAACUGCCAUGGGUUAGGGUGGGGAUCGCGACCCGCGCGAAAGACCAGCCCUGCGCUUCCGCCGGGGGACGCGGAGCCCAAACGCCGCUCACCGCUUGCGGGCGCCGGGCAUGGGGAGUGUGGUGUGAGCCCGCACCCGGGGAGGACGCAGGAGCUGCGGAGACGGGCGCGAGGAGGAGGAGAGGAGUCGUGGAUUGGAAGGACCCGAGGGAGGGAGGGUGGGGAAGCGAGGGAAAAGUGAAGCUGGGAGGAGAAGGCGGCGGAAGGUGGAGAUUGAUGCUUCUGUUUUUUGUUGCCGCUGCUGCCCUCGCGCUGGGAGCCGAGCCGGAGGGAAGGCGGUGGAGAGAUGAUUGCAGAGUUGGUGAGCAGCGCUCUGGGGCUCGCCUUGUAUCUCAACACCCUGAGUGCGGAUUUCUGCUAUGAUGACAGCCGUGCUAUCAAGACUAAUCAGGACCUUCUCCCAGAAACUCCAUGGACGCACAUUUUCUACAAUGAUUUUUGGGGGЖCUCUUCUAACCCACAGUGGCAGCCACAAGUCCUACCGGCCACUCUGCACUCUUUCUUUUCGCCUGAACCAUGCCAUUGGAGGGUUGAAUCCCUGGAGCUACCAUCUUGUCAAUGUCCUGUUGCAUGCAGCAGUCACUGGUCUCUUCACAAGCUUCUCCAAGAUCCUCCUUGGUGAUGGAUACUGGЖCAUUCAUGGCUGGCUUGAUGUUUGCUUCUCACCCCAUUCACACGGAGGCAGUGGCAGGAAUCGUGGGACGAGCCGAUGUCGGGGCCAGUCUCUUCUUUCUCCUCUCCUUGCUCUGCUACAUUAAACACUGUUCUACAAGAGGCUACUCAGCCAGAЖCCUGGGGCUGGUUCCUGGGGUCAGGЖCUGUGCGCAGGAUGCAGCAUGUUGUGGAAGGAACAAGGAGUGЖCUGUUCUCGCAGUUUCAGCAGUUUAUGAUGUCUUUGUCUUUCACAGGCUGAAAAUAAAACAGAUAUUACCUACCAUUUACAAAAGGAAGAACUUGUCGCUUUUCCUAAGCAUUAGUUUGUUAAUUUUCUGGGGUUCCUCCCUUUUGGGUGCCCGGUUAUACUGGAUGGGAAACAAACCACCAAGCUUUUCCAACUCGGACAACCCCGCUGCUGAUUCGGACAGCCUCCUCACCCGCACUCUCACCUUCUUCUACUUGCCAACCAAGAACCUCUGGCUGUUGCUAUGUCCAGAUACCCUCAGUUUUGAUUGGUCAAUGGAUGCUGUGCCUCUGCUCAAAACAGUUUGUGACUGGAGAAACCUACACACUGUGGCCUUCUAUACUGGЖCUCCUUCUCCUUGCCUACUAUGGUUUGAAGAGCCCGAGCGUAGACAGAGAAUGCAAUGGGAAAACUGUAACAAAUGGCAAGCAGAAUGCAAAUGGACAUAGCUGCCUUUCAGAUGUGGAGUACCAGAACUCAGAGЖCUAAGUCCAGCUUUGCAUCCAAAGUAGAAAAUGGCAUUAAAAACGAUGUAUCACAGAGAACCCAGCUUCCUUCUACGGAGAЖCAUUGUUGUUCUGUCUUUAUCUUUGUUAAUCAUACCCUUUGUUCCUGCCACGAЖCCUGUUUUUCUAUGUCGGCUUUGUAAUUGCAGAGCGAGUAUUAUAUAUUCCUAGUAUGGGCUUCUGCCUACUGAUUACAGUGGGUGCUAGAGCCCUUUAUGUCAAAGUCCAAAAGCGGUUCCUCAAGAGCUUGAUUUUUUAUGCUACAGCUACACUAAUUGUUUUUUAUGGЖCUCAAGACUGCGAUCAGGAAUGGAGACUGGCAGAAUGAGGAAAUGCUUUAUAGAUCAGGGAUAAAAGUAAACCCAGCUAAAGCAUGGGGUAACCUUGGAAAUGUUCUGAAGAGUCAGAGCAAAAUUUCUGAAGCUGAAAGCGCCUAUAGAAAUGCUUUGUACUACCGCAGCAACAUGGCUGACAUGCUUUAUAAUUUAGGGCUACUUCUCCAGGAGAACAGCAGGUUUGCAGAAGCACUACAUUAUUAUAAAUUGGCCAUUGGGAGCAGGCCUACCCUGGCUUCUGCAUAUUUAAAUACCGGUAUUAUUCUAAUGAACCAAGGAAGGACGGAAGAAGCCCGACGGACAUUCUUAAAGUGUUCGGAGAUCCCAGAUGAAAACCUAAAGGACCCUCAUGCACACAAGAGCUCUGUUACCAGUUGUUUGUACAACCUAGGAAAGCUGUAUCAUGAGCAGGGACACUAUGAGGUCUGGCCAAUGCCUCUCUGUCCUUUUCCCUCCCCCUUGUUCUGAUCCAGUCUCAGUGGUUUGUAACCUACAGCCUCCUUUGAGCCUAUGUCCUUUGAACAACUAAUAUGUAUACACGUUAAACUAUUGUCCUUUGAGAAACUAAUACAUGAUGACAUUGGAAUGGUUUUUUGAUCAAAUUUGUUUAGAAAAAGCUUCUGCUAAAUAAAAAUUUAAUAGAUUUCUUU
Sequence (SHORT NAMES ENCODING) GGGAGCUAAUAAACAUUGAAUGUGCAGCAGCUGCCUUGGCGGCCGGAGUCCGCCCGAGCGACACCGGAGCAGUGCGCCCGGGAGGCGGCGAGGGGAGGCGGUUCGCCUUGUCCCUCCCACCCGCGCCUCUUUCUCUCUCUUCCUCCAGCUGGUCCCAGAGCCCGGCUUGGUCCGGUCCCUCUGCCCCCAUCCCGCACCCUUCCACCUCCUCCGAGUCCCACUCCUCACCUAGGACGCCCCAAACUGCCAUGGGUUAGGGUGGGGAUCGCGACCCGCGCGAAAGACCAGCCCUGCGCUUCCGCCGGGGGACGCGGAGCCCAAACGCCGCUCACCGCUUGCGGGCGCCGGGCAUGGGGAGUGUGGUGUGAGCCCGCACCCGGGGAGGACGCAGGAGCUGCGGAGACGGGCGCGAGGAGGAGGAGAGGAGUCGUGGAUUGGAAGGACCCGAGGGAGGGAGGGUGGGGAAGCGAGGGAAAAGUGAAGCUGGGAGGAGAAGGCGGCGGAAGGUGGAGAUUGAUGCUUCUGUUUUUUGUUGCCGCUGCUGCCCUCGCGCUGGGAGCCGAGCCGGAGGGAAGGCGGUGGAGAGAUGAUUGCAGAGUUGGUGAGCAGCGCUCUGGGGCUCGCCUUGUAUCUCAACACCCUGAGUGCGGAUUUCUGCUAUGAUGACAGCCGUGCUAUCAAGACUAAUCAGGACCUUCUCCCAGAAACUCCAUGGACGCACAUUUUCUACAAUGAUUUUUGGGGGm6ACUCUUCUAACCCACAGUGGCAGCCACAAGUCCUACCGGCCACUCUGCACUCUUUCUUUUCGCCUGAACCAUGCCAUUGGAGGGUUGAAUCCCUGGAGCUACCAUCUUGUCAAUGUCCUGUUGCAUGCAGCAGUCACUGGUCUCUUCACAAGCUUCUCCAAGAUCCUCCUUGGUGAUGGAUACUGGm6ACAUUCAUGGCUGGCUUGAUGUUUGCUUCUCACCCCAUUCACACGGAGGCAGUGGCAGGAAUCGUGGGACGAGCCGAUGUCGGGGCCAGUCUCUUCUUUCUCCUCUCCUUGCUCUGCUACAUUAAACACUGUUCUACAAGAGGCUACUCAGCCAGAm6ACCUGGGGCUGGUUCCUGGGGUCAGGm6ACUGUGCGCAGGAUGCAGCAUGUUGUGGAAGGAACAAGGAGUGm6ACUGUUCUCGCAGUUUCAGCAGUUUAUGAUGUCUUUGUCUUUCACAGGCUGAAAAUAAAACAGAUAUUACCUACCAUUUACAAAAGGAAGAACUUGUCGCUUUUCCUAAGCAUUAGUUUGUUAAUUUUCUGGGGUUCCUCCCUUUUGGGUGCCCGGUUAUACUGGAUGGGAAACAAACCACCAAGCUUUUCCAACUCGGACAACCCCGCUGCUGAUUCGGACAGCCUCCUCACCCGCACUCUCACCUUCUUCUACUUGCCAACCAAGAACCUCUGGCUGUUGCUAUGUCCAGAUACCCUCAGUUUUGAUUGGUCAAUGGAUGCUGUGCCUCUGCUCAAAACAGUUUGUGACUGGAGAAACCUACACACUGUGGCCUUCUAUACUGGm6ACUCCUUCUCCUUGCCUACUAUGGUUUGAAGAGCCCGAGCGUAGACAGAGAAUGCAAUGGGAAAACUGUAACAAAUGGCAAGCAGAAUGCAAAUGGACAUAGCUGCCUUUCAGAUGUGGAGUACCAGAACUCAGAGm6ACUAAGUCCAGCUUUGCAUCCAAAGUAGAAAAUGGCAUUAAAAACGAUGUAUCACAGAGAACCCAGCUUCCUUCUACGGAGAm6ACAUUGUUGUUCUGUCUUUAUCUUUGUUAAUCAUACCCUUUGUUCCUGCCACGAm6ACCUGUUUUUCUAUGUCGGCUUUGUAAUUGCAGAGCGAGUAUUAUAUAUUCCUAGUAUGGGCUUCUGCCUACUGAUUACAGUGGGUGCUAGAGCCCUUUAUGUCAAAGUCCAAAAGCGGUUCCUCAAGAGCUUGAUUUUUUAUGCUACAGCUACACUAAUUGUUUUUUAUGGm6ACUCAAGACUGCGAUCAGGAAUGGAGACUGGCAGAAUGAGGAAAUGCUUUAUAGAUCAGGGAUAAAAGUAAACCCAGCUAAAGCAUGGGGUAACCUUGGAAAUGUUCUGAAGAGUCAGAGCAAAAUUUCUGAAGCUGAAAGCGCCUAUAGAAAUGCUUUGUACUACCGCAGCAACAUGGCUGACAUGCUUUAUAAUUUAGGGCUACUUCUCCAGGAGAACAGCAGGUUUGCAGAAGCACUACAUUAUUAUAAAUUGGCCAUUGGGAGCAGGCCUACCCUGGCUUCUGCAUAUUUAAAUACCGGUAUUAUUCUAAUGAACCAAGGAAGGACGGAAGAAGCCCGACGGACAUUCUUAAAGUGUUCGGAGAUCCCAGAUGAAAACCUAAAGGACCCUCAUGCACACAAGAGCUCUGUUACCAGUUGUUUGUACAACCUAGGAAAGCUGUAUCAUGAGCAGGGACACUAUGAGGUCUGGCCAAUGCCUCUCUGUCCUUUUCCCUCCCCCUUGUUCUGAUCCAGUCUCAGUGGUUUGUAACCUACAGCCUCCUUUGAGCCUAUGUCCUUUGAACAACUAAUAUGUAUACACGUUAAACUAUUGUCCUUUGAGAAACUAAUACAUGAUGACAUUGGAAUGGUUUUUUGAUCAAAUUUGUUUAGAAAAAGCUUCUGCUAAAUAAAAAUUUAAUAGAUUUCUUU
Sequence (MODOMICS CODE ENCODING) GGGAGCUAAUAAACAUUGAAUGUGCAGCAGCUGCCUUGGCGGCCGGAGUCCGCCCGAGCGACACCGGAGCAGUGCGCCCGGGAGGCGGCGAGGGGAGGCGGUUCGCCUUGUCCCUCCCACCCGCGCCUCUUUCUCUCUCUUCCUCCAGCUGGUCCCAGAGCCCGGCUUGGUCCGGUCCCUCUGCCCCCAUCCCGCACCCUUCCACCUCCUCCGAGUCCCACUCCUCACCUAGGACGCCCCAAACUGCCAUGGGUUAGGGUGGGGAUCGCGACCCGCGCGAAAGACCAGCCCUGCGCUUCCGCCGGGGGACGCGGAGCCCAAACGCCGCUCACCGCUUGCGGGCGCCGGGCAUGGGGAGUGUGGUGUGAGCCCGCACCCGGGGAGGACGCAGGAGCUGCGGAGACGGGCGCGAGGAGGAGGAGAGGAGUCGUGGAUUGGAAGGACCCGAGGGAGGGAGGGUGGGGAAGCGAGGGAAAAGUGAAGCUGGGAGGAGAAGGCGGCGGAAGGUGGAGAUUGAUGCUUCUGUUUUUUGUUGCCGCUGCUGCCCUCGCGCUGGGAGCCGAGCCGGAGGGAAGGCGGUGGAGAGAUGAUUGCAGAGUUGGUGAGCAGCGCUCUGGGGCUCGCCUUGUAUCUCAACACCCUGAGUGCGGAUUUCUGCUAUGAUGACAGCCGUGCUAUCAAGACUAAUCAGGACCUUCUCCCAGAAACUCCAUGGACGCACAUUUUCUACAAUGAUUUUUGGGGG2000000006ACUCUUCUAACCCACAGUGGCAGCCACAAGUCCUACCGGCCACUCUGCACUCUUUCUUUUCGCCUGAACCAUGCCAUUGGAGGGUUGAAUCCCUGGAGCUACCAUCUUGUCAAUGUCCUGUUGCAUGCAGCAGUCACUGGUCUCUUCACAAGCUUCUCCAAGAUCCUCCUUGGUGAUGGAUACUGG2000000006ACAUUCAUGGCUGGCUUGAUGUUUGCUUCUCACCCCAUUCACACGGAGGCAGUGGCAGGAAUCGUGGGACGAGCCGAUGUCGGGGCCAGUCUCUUCUUUCUCCUCUCCUUGCUCUGCUACAUUAAACACUGUUCUACAAGAGGCUACUCAGCCAGA2000000006ACCUGGGGCUGGUUCCUGGGGUCAGG2000000006ACUGUGCGCAGGAUGCAGCAUGUUGUGGAAGGAACAAGGAGUG2000000006ACUGUUCUCGCAGUUUCAGCAGUUUAUGAUGUCUUUGUCUUUCACAGGCUGAAAAUAAAACAGAUAUUACCUACCAUUUACAAAAGGAAGAACUUGUCGCUUUUCCUAAGCAUUAGUUUGUUAAUUUUCUGGGGUUCCUCCCUUUUGGGUGCCCGGUUAUACUGGAUGGGAAACAAACCACCAAGCUUUUCCAACUCGGACAACCCCGCUGCUGAUUCGGACAGCCUCCUCACCCGCACUCUCACCUUCUUCUACUUGCCAACCAAGAACCUCUGGCUGUUGCUAUGUCCAGAUACCCUCAGUUUUGAUUGGUCAAUGGAUGCUGUGCCUCUGCUCAAAACAGUUUGUGACUGGAGAAACCUACACACUGUGGCCUUCUAUACUGG2000000006ACUCCUUCUCCUUGCCUACUAUGGUUUGAAGAGCCCGAGCGUAGACAGAGAAUGCAAUGGGAAAACUGUAACAAAUGGCAAGCAGAAUGCAAAUGGACAUAGCUGCCUUUCAGAUGUGGAGUACCAGAACUCAGAG2000000006ACUAAGUCCAGCUUUGCAUCCAAAGUAGAAAAUGGCAUUAAAAACGAUGUAUCACAGAGAACCCAGCUUCCUUCUACGGAGA2000000006ACAUUGUUGUUCUGUCUUUAUCUUUGUUAAUCAUACCCUUUGUUCCUGCCACGA2000000006ACCUGUUUUUCUAUGUCGGCUUUGUAAUUGCAGAGCGAGUAUUAUAUAUUCCUAGUAUGGGCUUCUGCCUACUGAUUACAGUGGGUGCUAGAGCCCUUUAUGUCAAAGUCCAAAAGCGGUUCCUCAAGAGCUUGAUUUUUUAUGCUACAGCUACACUAAUUGUUUUUUAUGG2000000006ACUCAAGACUGCGAUCAGGAAUGGAGACUGGCAGAAUGAGGAAAUGCUUUAUAGAUCAGGGAUAAAAGUAAACCCAGCUAAAGCAUGGGGUAACCUUGGAAAUGUUCUGAAGAGUCAGAGCAAAAUUUCUGAAGCUGAAAGCGCCUAUAGAAAUGCUUUGUACUACCGCAGCAACAUGGCUGACAUGCUUUAUAAUUUAGGGCUACUUCUCCAGGAGAACAGCAGGUUUGCAGAAGCACUACAUUAUUAUAAAUUGGCCAUUGGGAGCAGGCCUACCCUGGCUUCUGCAUAUUUAAAUACCGGUAUUAUUCUAAUGAACCAAGGAAGGACGGAAGAAGCCCGACGGACAUUCUUAAAGUGUUCGGAGAUCCCAGAUGAAAACCUAAAGGACCCUCAUGCACACAAGAGCUCUGUUACCAGUUGUUUGUACAACCUAGGAAAGCUGUAUCAUGAGCAGGGACACUAUGAGGUCUGGCCAAUGCCUCUCUGUCCUUUUCCCUCCCCCUUGUUCUGAUCCAGUCUCAGUGGUUUGUAACCUACAGCCUCCUUUGAGCCUAUGUCCUUUGAACAACUAAUAUGUAUACACGUUAAACUAUUGUCCUUUGAGAAACUAAUACAUGAUGACAUUGGAAUGGUUUUUUGAUCAAAUUUGUUUAGAAAAAGCUUCUGCUAAAUAAAAAUUUAAUAGAUUUCUUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 746 932 1088 1114 1157 1543 1679 1761 1815 1987
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 12:82857086:+ 12:82857272:+ 12:82857428:+ 12:82857454:+ 12:82857497:+ 12:82896120:+ 12:82896256:+ 12:82896338:+ 12:82896392:+ 12:82896564:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
5Nnepx5V7yHo
gBgcfFQ5WN9C
msuJfBpJvM5H
NjZ8bGGJsNSR
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
UN3tNpbCPHYf
VyCX26p5UBRL
Lny8GcCeVGc9
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
3TeAZFYFxgvp
5Nnepx5V7yHo
aHkqKEJkRYyb
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
4HMi5ykupT9V
5aTkEfEpX8Xm
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VyCX26p5UBRL
KENzb7mwdBd9
Lny8GcCeVGc9
UKen6WEino9G
4HMi5ykupT9V
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G