Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000541210
Gene ID: ENSG00000088992
Gene Name: TESC
Sequence (UNICHARACTER ENCODING) GUUAUAUGAGGCCCCGCUCCGGCCCCACGCGGAACCCGCGGCUCCGAGCCUUCGCCGGCGUCCCGACCCGAGGCCGGACCCGAGGCCAGUCCCGCCGBUGCGCAGCCGAAGCCAGUGCGGGGCCUGAGAGGGACGCGCGCCCCGGGGCCCCCGCCGCGGGCACCAUGGGCGCUGCCCACUCCGCGUCUGAGGAGGUGCGGGAGCUCGAGGGCAAGACCGGCUUCUCAUCGGAUCAGAUCGAGCAGCUCCAUCGGAGAUUUAAGCAGCUGAGUGGAGAUCAGCCUACCAUUCGGAACCUGCGCAAGGGACCBAGUGGCCUGGCUGAUGAGAUCAAUUUCGAGGACUUCCUGACCAUCAUGUCCUACUUCCGGCCCAUCGACACCACCAUGGACGAGGAACAGGUGGAGCUGUCCCGGAAGGAGAAGCUGAGAUUUCUGUUCCACAUGUACGACUCGGACAGCGACGGCCGCAUCACUCUGGAAGAAUAUCGAAAUGUGGUCGAGGAGCUGCUGUCGGGAAACCCUCACAUCGAGAAGGAGUCCGCUCGCUCCAUCGCCGACGGGGCCAUGAUGGAGGCGGCCAGCGUGUGCAUGGGGCAGAUGGAGCCUGAUCAGGUGUACGAGGGGAUCACCUUCGAGGACUUCCUGAAGAUCUGGCAGGGGAUCGACAUUGAGЖCCAAGAUGCACGUCCGCUUCCUUAACAUGGAAЖCCAUGGCCCUCUGCCACUGACCCACCGCCACCUCCGCGGAGAAACUGCACUUUGCAAUGGGGCCGCCUCCCCGCGUAGCUGGAGCAGCCCAGGCCCGGCGGACAGCCUCUUCCUGCAGCGCCGGUACAUAGCCAAGGCUCGUCUGCGCACCUUGUGUCUUGUAGGGUAUGGUAUGUGGGACUUCGCUGUUUUUAUCUCCAAUAAAAAAAAAAAAAAGGUUUGUUAAUU
Sequence (SHORT NAMES ENCODING) GUUAUAUGAGGCCCCGCUCCGGCCCCACGCGGAACCCGCGGCUCCGAGCCUUCGCCGGCGUCCCGACCCGAGGCCGGACCCGAGGCCAGUCCCGCCGCmUGCGCAGCCGAAGCCAGUGCGGGGCCUGAGAGGGACGCGCGCCCCGGGGCCCCCGCCGCGGGCACCAUGGGCGCUGCCCACUCCGCGUCUGAGGAGGUGCGGGAGCUCGAGGGCAAGACCGGCUUCUCAUCGGAUCAGAUCGAGCAGCUCCAUCGGAGAUUUAAGCAGCUGAGUGGAGAUCAGCCUACCAUUCGGAACCUGCGCAAGGGACCCmAGUGGCCUGGCUGAUGAGAUCAAUUUCGAGGACUUCCUGACCAUCAUGUCCUACUUCCGGCCCAUCGACACCACCAUGGACGAGGAACAGGUGGAGCUGUCCCGGAAGGAGAAGCUGAGAUUUCUGUUCCACAUGUACGACUCGGACAGCGACGGCCGCAUCACUCUGGAAGAAUAUCGAAAUGUGGUCGAGGAGCUGCUGUCGGGAAACCCUCACAUCGAGAAGGAGUCCGCUCGCUCCAUCGCCGACGGGGCCAUGAUGGAGGCGGCCAGCGUGUGCAUGGGGCAGAUGGAGCCUGAUCAGGUGUACGAGGGGAUCACCUUCGAGGACUUCCUGAAGAUCUGGCAGGGGAUCGACAUUGAGm6ACCAAGAUGCACGUCCGCUUCCUUAACAUGGAAm6ACCAUGGCCCUCUGCCACUGACCCACCGCCACCUCCGCGGAGAAACUGCACUUUGCAAUGGGGCCGCCUCCCCGCGUAGCUGGAGCAGCCCAGGCCCGGCGGACAGCCUCUUCCUGCAGCGCCGGUACAUAGCCAAGGCUCGUCUGCGCACCUUGUGUCUUGUAGGGUAUGGUAUGUGGGACUUCGCUGUUUUUAUCUCCAAUAAAAAAAAAAAAAAGGUUUGUUAAUU
Sequence (MODOMICS CODE ENCODING) GUUAUAUGAGGCCCCGCUCCGGCCCCACGCGGAACCCGCGGCUCCGAGCCUUCGCCGGCGUCCCGACCCGAGGCCGGACCCGAGGCCAGUCCCGCCG2000000090CUGCGCAGCCGAAGCCAGUGCGGGGCCUGAGAGGGACGCGCGCCCCGGGGCCCCCGCCGCGGGCACCAUGGGCGCUGCCCACUCCGCGUCUGAGGAGGUGCGGGAGCUCGAGGGCAAGACCGGCUUCUCAUCGGAUCAGAUCGAGCAGCUCCAUCGGAGAUUUAAGCAGCUGAGUGGAGAUCAGCCUACCAUUCGGAACCUGCGCAAGGGACC2000000090CAGUGGCCUGGCUGAUGAGAUCAAUUUCGAGGACUUCCUGACCAUCAUGUCCUACUUCCGGCCCAUCGACACCACCAUGGACGAGGAACAGGUGGAGCUGUCCCGGAAGGAGAAGCUGAGAUUUCUGUUCCACAUGUACGACUCGGACAGCGACGGCCGCAUCACUCUGGAAGAAUAUCGAAAUGUGGUCGAGGAGCUGCUGUCGGGAAACCCUCACAUCGAGAAGGAGUCCGCUCGCUCCAUCGCCGACGGGGCCAUGAUGGAGGCGGCCAGCGUGUGCAUGGGGCAGAUGGAGCCUGAUCAGGUGUACGAGGGGAUCACCUUCGAGGACUUCCUGAAGAUCUGGCAGGGGAUCGACAUUGAG2000000006ACCAAGAUGCACGUCCGCUUCCUUAACAUGGAA2000000006ACCAUGGCCCUCUGCCACUGACCCACCGCCACCUCCGCGGAGAAACUGCACUUUGCAAUGGGGCCGCCUCCCCGCGUAGCUGGAGCAGCCCAGGCCCGGCGGACAGCCUCUUCCUGCAGCGCCGGUACAUAGCCAAGGCUCGUCUGCGCACCUUGUGUCUUGUAGGGUAUGGUAUGUGGGACUUCGCUGUUUUUAUCUCCAAUAAAAAAAAAAAAAAGGUUUGUUAAUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 98 311 675 708
Modification Positions Cm Cm m6A m6A
Genomic Coordinates 12:117099349:- 12:117049140:- 12:117039186:- 12:117039153:-
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs jaSvBXBkn3xs
YkSG92k4EHDM
jaSvBXBkn3xs
YkSG92k4EHDM
8cMbzB4aD5Se
ArijeGVTwYBw
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
JkWoGWVwjNda
Yfn77uLS5tv8