General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000540304
Gene ID:	ENSG00000130779
Gene Name:	CLIP1
Sequence (UNICHARACTER ENCODING)	UGAGCUGAUGCCUGCCCCGAUUCUACAGACACCAUGAGAUUUAAUCCAGAGACUGACUUCACUAUAGAACCCACAGUUGUAUCAAUGGUUGGGGAAAGAUAGUGGCAACAGGCAAAGGAGAAACAGCUCUGACAUACAAAGAAAAUGAGUAUGCUAAAGCCAAGUGGGCUUAAGGCCCCCACCAAGAUCCUGAAGCCUGGAAGCACAGCUCUGAAGACACCUACGGCUGUUGUAGCUCCAGUAGAAAAAACCAUAUCCAGUGAAAAAGCAUCAAGCACUCCAUCAUCUGAGACUCAGGAGGAAUUUGUGGAUGЖCUUUCGAGUUGGGGAGCGAGUUUGGGUGAAUGGAAAUAAGCCUGGAUUUAUCCAGUUUCUUGGAGAAACCCAGUUUGCACCAGGCCAGUGGGCUGGAAUUGUUUUAGAUGAЖCCCAUAGGCAAGAЖCGAUGGUUCGGUGGCAGGAGUUCGGUAUUUCCAGUGUGAЖCCUUUAAAGGGCAUAUUUACCCGACCUUCAAAGUUAACAAGGAAGGUGCAAGCAGAAGAUGAAGCUAAUGGCCUGCAGACAACGCCCGCCUCCCGAGCUACUUCACCGCUGUGCACUUCUACGGCCAGCAUGGUGUCUUCCUCCCCCUCCACCCCUUCAAACAUCCCUCAGAAACCAUCACAGCCAGCAGCAAAGGAACCUUCAGCUACGCCUCCGAUCAGCAACCUUACAAAAЖCUGCCAGUGAAUCUAUCUCCAACCUUUCAGAGGCUGGCUCAAUCAAGAAAGGAGAAAGAGAGCUCAAAAUCGGAGACAGAGUAUUGGUUGGUGGCACUAAGGCUGGUGUAGUCCGGUUUCUUGGGGAGACCGACUUUGCCAAGGGGGAGUGGUGUGGCGUGGAGUUAGAUGAGCCACUUGGGAAGAAUGAUGGCGCUGUUGCUGGAACAAGGUAUUUUCAGUGUCAACCCAAAUAUGGCUUGUUCGCUCCUGUCCACAAAGUUACCAAGAUUGGCUUCCCUUCCACUACACCAGCCAAAGCCAAGGCCAACGCAGUGAGGCGAGUGAUGGCGACCACGUCCGCCAGCCUGAAGCGCAGCCCUUCUGCCUCUUCCCUCAGCUCCAUGAGCUCAGUGGCCUCCUCUGUGAGCAGCAGGCCCAGUCGGACAGGACUACAUGUCCUGGAAUUGGAAGCCAAAAUGGACCAGCUGCGAACAAUGGUGGAAGCUGCUGACAGGGAGAAGGUGGAGCUUCUCAACCAGCUUGAAGAGGAGAAAAGGAAGGUUGAGGACCUUCAGUUCCGGGUUGAAGAAGAAUCAAUUACCAAAGGUGAUCUUGAGACGCAGACCAAACUGGAGCAUGCCCGCAUUAAGGAGCUUGAACAGAGCCUGCUCUUUGAAAAGACCAAAGCUGACAAACUCCAGAGGGAGUUAGAAGACACUAGGGUGGCUACAGUUUCAGAAAAGUCACGUAUAAUGGAACUGGAGAAAGACCUAGCAUUGAGAGUACAGGAAGUAGCUGAGCUCCGAAGAAGGCUAGAGUCCAAUAAGCCUGCUGGGGAUGUGGЖCAUGUCACUUUCCCUUUUGCAAGAGAUAAGCUCUUUGCAAGAAAAGUUAGAAGUCACCCGUACUGACCACCAGAGAGAAAUAACUUCUCUGAAGGAGCAUUUUGGAGCCCGGGAAGAAACUCAUCAGAAGGAGAUAAAGGCUCUGUAUACCGCCACGGAAAAGCUUUCCAAAGAGAACGAGUCAUUGAAAAGCAAGCUGGAGCAUGCCAACAAAGAGAЖCUCAGAUGUGAUAGCUCUAUGGAAGUCCAAACUGGAGACUGCCAUCGCAUCCCACCAGCAGGCGAUGGAAGAЖCUGAAGGUAUCUUUCAGCAAAGGGCUUGGAACAGAGACGGCAGAAUUUGCUGAACUAAAAACACAAAUAGAGAAAAUGAGACUAGAUUACCAACACGAAAUAGAAAAUUUGCAGAAUCAACAAGЖCUCUGAACGGGCUGCCCAUGCUAAAGAGAUGGAAGCCUUGAGGGCUAAACUGAUGAAAGUUAUUAAAGAAAAGGAAAACAGUCUGGAAGCCAUCAGGUCGAAACUGGACAAAGCAGAAGACCAGCAUCUCGUAGAAAUGGAAGACACGUUAAACAAAUUACAGGAAGCUGAAAUAAAGGCUAGUAGCAUUACCAGAGAGCUCCAGGGGAGAGAGCUAAAGCUUACUAACCUUCAGGAAAAUUUGAGUGAAGUCAGUCAAGUGAAAGAGACUUUGGAAAAAGAACUUCAGAUUUUGAAAGAAAAGUUUGCUGAAGCUUCAGAGGAGGCAGUCUCUGUUCAGAGAAGUAUGCAAGAAACUGUAAAUAAGUUACACCAAAAGGAGGAACAGUUUAACAUGCUGUCUUCUGACUUGGAGAAGCUGAGAGAAAACUUAGCAGAUAUGGAGGCAAAAUUUAGAGAGAAAGAUGAGAGAGAAGAGCAGCUGAUAAAGGCAAAGGAAAAACUGGAAAAUGACAUUGCAGAAAUAAUGAAGAUGUCAGGAGAUAACUCUUCUCAGCUGACAAAAAUGAACGAUGAAUUACGUCUGAAAGAAAG
Sequence (SHORT NAMES ENCODING)	UGAGCUGAUGCCUGCCCCGAUUCUACAGACACCAUGAGAUUUAAUCCAGAGACUGACUUCACUAUAGAACCCACAGUUGUAUCAAUGGUUGGGGAAAGAUAGUGGCAACAGGCAAAGGAGAAACAGCUCUGACAUACAAAGAAAAUGAGUAUGCUAAAGCCAAGUGGGCUUAAGGCCCCCACCAAGAUCCUGAAGCCUGGAAGCACAGCUCUGAAGACACCUACGGCUGUUGUAGCUCCAGUAGAAAAAACCAUAUCCAGUGAAAAAGCAUCAAGCACUCCAUCAUCUGAGACUCAGGAGGAAUUUGUGGAUGm6ACUUUCGAGUUGGGGAGCGAGUUUGGGUGAAUGGAAAUAAGCCUGGAUUUAUCCAGUUUCUUGGAGAAACCCAGUUUGCACCAGGCCAGUGGGCUGGAAUUGUUUUAGAUGAm6ACCCAUAGGCAAGAm6ACGAUGGUUCGGUGGCAGGAGUUCGGUAUUUCCAGUGUGAm6ACCUUUAAAGGGCAUAUUUACCCGACCUUCAAAGUUAACAAGGAAGGUGCAAGCAGAAGAUGAAGCUAAUGGCCUGCAGACAACGCCCGCCUCCCGAGCUACUUCACCGCUGUGCACUUCUACGGCCAGCAUGGUGUCUUCCUCCCCCUCCACCCCUUCAAACAUCCCUCAGAAACCAUCACAGCCAGCAGCAAAGGAACCUUCAGCUACGCCUCCGAUCAGCAACCUUACAAAAm6ACUGCCAGUGAAUCUAUCUCCAACCUUUCAGAGGCUGGCUCAAUCAAGAAAGGAGAAAGAGAGCUCAAAAUCGGAGACAGAGUAUUGGUUGGUGGCACUAAGGCUGGUGUAGUCCGGUUUCUUGGGGAGACCGACUUUGCCAAGGGGGAGUGGUGUGGCGUGGAGUUAGAUGAGCCACUUGGGAAGAAUGAUGGCGCUGUUGCUGGAACAAGGUAUUUUCAGUGUCAACCCAAAUAUGGCUUGUUCGCUCCUGUCCACAAAGUUACCAAGAUUGGCUUCCCUUCCACUACACCAGCCAAAGCCAAGGCCAACGCAGUGAGGCGAGUGAUGGCGACCACGUCCGCCAGCCUGAAGCGCAGCCCUUCUGCCUCUUCCCUCAGCUCCAUGAGCUCAGUGGCCUCCUCUGUGAGCAGCAGGCCCAGUCGGACAGGACUACAUGUCCUGGAAUUGGAAGCCAAAAUGGACCAGCUGCGAACAAUGGUGGAAGCUGCUGACAGGGAGAAGGUGGAGCUUCUCAACCAGCUUGAAGAGGAGAAAAGGAAGGUUGAGGACCUUCAGUUCCGGGUUGAAGAAGAAUCAAUUACCAAAGGUGAUCUUGAGACGCAGACCAAACUGGAGCAUGCCCGCAUUAAGGAGCUUGAACAGAGCCUGCUCUUUGAAAAGACCAAAGCUGACAAACUCCAGAGGGAGUUAGAAGACACUAGGGUGGCUACAGUUUCAGAAAAGUCACGUAUAAUGGAACUGGAGAAAGACCUAGCAUUGAGAGUACAGGAAGUAGCUGAGCUCCGAAGAAGGCUAGAGUCCAAUAAGCCUGCUGGGGAUGUGGm6ACAUGUCACUUUCCCUUUUGCAAGAGAUAAGCUCUUUGCAAGAAAAGUUAGAAGUCACCCGUACUGACCACCAGAGAGAAAUAACUUCUCUGAAGGAGCAUUUUGGAGCCCGGGAAGAAACUCAUCAGAAGGAGAUAAAGGCUCUGUAUACCGCCACGGAAAAGCUUUCCAAAGAGAACGAGUCAUUGAAAAGCAAGCUGGAGCAUGCCAACAAAGAGAm6ACUCAGAUGUGAUAGCUCUAUGGAAGUCCAAACUGGAGACUGCCAUCGCAUCCCACCAGCAGGCGAUGGAAGAm6ACUGAAGGUAUCUUUCAGCAAAGGGCUUGGAACAGAGACGGCAGAAUUUGCUGAACUAAAAACACAAAUAGAGAAAAUGAGACUAGAUUACCAACACGAAAUAGAAAAUUUGCAGAAUCAACAAGm6ACUCUGAACGGGCUGCCCAUGCUAAAGAGAUGGAAGCCUUGAGGGCUAAACUGAUGAAAGUUAUUAAAGAAAAGGAAAACAGUCUGGAAGCCAUCAGGUCGAAACUGGACAAAGCAGAAGACCAGCAUCUCGUAGAAAUGGAAGACACGUUAAACAAAUUACAGGAAGCUGAAAUAAAGGCUAGUAGCAUUACCAGAGAGCUCCAGGGGAGAGAGCUAAAGCUUACUAACCUUCAGGAAAAUUUGAGUGAAGUCAGUCAAGUGAAAGAGACUUUGGAAAAAGAACUUCAGAUUUUGAAAGAAAAGUUUGCUGAAGCUUCAGAGGAGGCAGUCUCUGUUCAGAGAAGUAUGCAAGAAACUGUAAAUAAGUUACACCAAAAGGAGGAACAGUUUAACAUGCUGUCUUCUGACUUGGAGAAGCUGAGAGAAAACUUAGCAGAUAUGGAGGCAAAAUUUAGAGAGAAAGAUGAGAGAGAAGAGCAGCUGAUAAAGGCAAAGGAAAAACUGGAAAAUGACAUUGCAGAAAUAAUGAAGAUGUCAGGAGAUAACUCUUCUCAGCUGACAAAAAUGAACGAUGAAUUACGUCUGAAAGAAAG
Sequence (MODOMICS CODE ENCODING)	UGAGCUGAUGCCUGCCCCGAUUCUACAGACACCAUGAGAUUUAAUCCAGAGACUGACUUCACUAUAGAACCCACAGUUGUAUCAAUGGUUGGGGAAAGAUAGUGGCAACAGGCAAAGGAGAAACAGCUCUGACAUACAAAGAAAAUGAGUAUGCUAAAGCCAAGUGGGCUUAAGGCCCCCACCAAGAUCCUGAAGCCUGGAAGCACAGCUCUGAAGACACCUACGGCUGUUGUAGCUCCAGUAGAAAAAACCAUAUCCAGUGAAAAAGCAUCAAGCACUCCAUCAUCUGAGACUCAGGAGGAAUUUGUGGAUG2000000006ACUUUCGAGUUGGGGAGCGAGUUUGGGUGAAUGGAAAUAAGCCUGGAUUUAUCCAGUUUCUUGGAGAAACCCAGUUUGCACCAGGCCAGUGGGCUGGAAUUGUUUUAGAUGA2000000006ACCCAUAGGCAAGA2000000006ACGAUGGUUCGGUGGCAGGAGUUCGGUAUUUCCAGUGUGA2000000006ACCUUUAAAGGGCAUAUUUACCCGACCUUCAAAGUUAACAAGGAAGGUGCAAGCAGAAGAUGAAGCUAAUGGCCUGCAGACAACGCCCGCCUCCCGAGCUACUUCACCGCUGUGCACUUCUACGGCCAGCAUGGUGUCUUCCUCCCCCUCCACCCCUUCAAACAUCCCUCAGAAACCAUCACAGCCAGCAGCAAAGGAACCUUCAGCUACGCCUCCGAUCAGCAACCUUACAAAA2000000006ACUGCCAGUGAAUCUAUCUCCAACCUUUCAGAGGCUGGCUCAAUCAAGAAAGGAGAAAGAGAGCUCAAAAUCGGAGACAGAGUAUUGGUUGGUGGCACUAAGGCUGGUGUAGUCCGGUUUCUUGGGGAGACCGACUUUGCCAAGGGGGAGUGGUGUGGCGUGGAGUUAGAUGAGCCACUUGGGAAGAAUGAUGGCGCUGUUGCUGGAACAAGGUAUUUUCAGUGUCAACCCAAAUAUGGCUUGUUCGCUCCUGUCCACAAAGUUACCAAGAUUGGCUUCCCUUCCACUACACCAGCCAAAGCCAAGGCCAACGCAGUGAGGCGAGUGAUGGCGACCACGUCCGCCAGCCUGAAGCGCAGCCCUUCUGCCUCUUCCCUCAGCUCCAUGAGCUCAGUGGCCUCCUCUGUGAGCAGCAGGCCCAGUCGGACAGGACUACAUGUCCUGGAAUUGGAAGCCAAAAUGGACCAGCUGCGAACAAUGGUGGAAGCUGCUGACAGGGAGAAGGUGGAGCUUCUCAACCAGCUUGAAGAGGAGAAAAGGAAGGUUGAGGACCUUCAGUUCCGGGUUGAAGAAGAAUCAAUUACCAAAGGUGAUCUUGAGACGCAGACCAAACUGGAGCAUGCCCGCAUUAAGGAGCUUGAACAGAGCCUGCUCUUUGAAAAGACCAAAGCUGACAAACUCCAGAGGGAGUUAGAAGACACUAGGGUGGCUACAGUUUCAGAAAAGUCACGUAUAAUGGAACUGGAGAAAGACCUAGCAUUGAGAGUACAGGAAGUAGCUGAGCUCCGAAGAAGGCUAGAGUCCAAUAAGCCUGCUGGGGAUGUGG2000000006ACAUGUCACUUUCCCUUUUGCAAGAGAUAAGCUCUUUGCAAGAAAAGUUAGAAGUCACCCGUACUGACCACCAGAGAGAAAUAACUUCUCUGAAGGAGCAUUUUGGAGCCCGGGAAGAAACUCAUCAGAAGGAGAUAAAGGCUCUGUAUACCGCCACGGAAAAGCUUUCCAAAGAGAACGAGUCAUUGAAAAGCAAGCUGGAGCAUGCCAACAAAGAGA2000000006ACUCAGAUGUGAUAGCUCUAUGGAAGUCCAAACUGGAGACUGCCAUCGCAUCCCACCAGCAGGCGAUGGAAGA2000000006ACUGAAGGUAUCUUUCAGCAAAGGGCUUGGAACAGAGACGGCAGAAUUUGCUGAACUAAAAACACAAAUAGAGAAAAUGAGACUAGAUUACCAACACGAAAUAGAAAAUUUGCAGAAUCAACAAG2000000006ACUCUGAACGGGCUGCCCAUGCUAAAGAGAUGGAAGCCUUGAGGGCUAAACUGAUGAAAGUUAUUAAAGAAAAGGAAAACAGUCUGGAAGCCAUCAGGUCGAAACUGGACAAAGCAGAAGACCAGCAUCUCGUAGAAAUGGAAGACACGUUAAACAAAUUACAGGAAGCUGAAAUAAAGGCUAGUAGCAUUACCAGAGAGCUCCAGGGGAGAGAGCUAAAGCUUACUAACCUUCAGGAAAAUUUGAGUGAAGUCAGUCAAGUGAAAGAGACUUUGGAAAAAGAACUUCAGAUUUUGAAAGAAAAGUUUGCUGAAGCUUCAGAGGAGGCAGUCUCUGUUCAGAGAAGUAUGCAAGAAACUGUAAAUAAGUUACACCAAAAGGAGGAACAGUUUAACAUGCUGUCUUCUGACUUGGAGAAGCUGAGAGAAAACUUAGCAGAUAUGGAGGCAAAAUUUAGAGAGAAAGAUGAGAGAGAAGAGCAGCUGAUAAAGGCAAAGGAAAAACUGGAAAAUGACAUUGCAGAAAUAAUGAAGAUGUCAGGAGAUAACUCUUCUCAGCUGACAAAAAUGAACGAUGAAUUACGUCUGAAAGAAAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	314	426	440	480	715	1541	1760	1833	1958
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	12:122377876:-	12:122377764:-	12:122377750:-	12:122377710:-	12:122377475:-	12:122341576:-	12:122341357:-	12:122341284:-	12:122341159:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 XUkp6ghERQML	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	3TeAZFYFxgvp 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT Lny8GcCeVGc9	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn bXBqJigD9oV3	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB bXBqJigD9oV3