Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000541583
Gene ID: ENSG00000181666
Gene Name: ZNF875
Sequence (UNICHARACTER ENCODING) AACUGACGUGCUGAGCAGCUAAUUCAGUGCCUGAGGUUACACUAGUUGUGGACAGAGAUGGGUUCCAAAUCCAGAUAGUAUGGGUUGAAUCCACGCUCUUCAUCACCACCCACUUUCCCUCCUUAGGCCUGAGCAGGCACGUGGCAGCAUUUGGUAGAGGAAGGAGUGAGCCCUGCUGUAGGAACUAUAUAUAUUGGCGUUCGUGGCAUUCAGGGAUGUGGCUGUGUACUUCACCCAGGAGGAGUGGAGGUUGUUGAGCCCUGCUCAGAGGACCCUGCACAGGGAGGUGAUGCUGGAGACUUAUAACCAUCUGGUCUCACUGGAAAUUCCAUCUUCUAAACCAAAACUCAUUGCUCAGCUGGAGCGAGGGGAAGCGCCCUGGAGAGAGGAGAGAAAAUGUCCACUGGACCUCUGUCCAGAAUCGAAGCCAGAAAUUCAACUUAGUCCCUCCUGCCCUCUGAUUUUCUCCAGUCAGCAAGCUCUCAGCCAACAUGUGUGGCUGAGUCAUCUCUCUCAGCUGUUUUCAAGUUUAUGGGCAGGAAAUCCUCUCCACCUGGGAAAACACUAUCCAGAAGAUCAGAAACAACAGCAGGAUCCAUUCUGCUUUAGUGGCAAAGCAGAAUGGAUUCAAGAGGGAGAAGACUCCAGACUCCUGUUUGGGAGAGUAAGCAAAAAUGGCACUUCAAAGGCACUUUCCAGCCCACCUGAAGAACAACAGCCAGCACAGUCCAAGGAAGACAACACAGUGGUGGAUAUAGGGUCCAGCCCUGAACGGAGGGCAGAUCUAGAGGAAACAGACAAAGUAUUGCAUGGUUUAGAAGUCUCAGGAUUUGGAGAAAUCAAAUAUGAAGAGUUUGGGCCAGGCUUUAUCAAGGAGUCAAACCUCCUUAGCCUCCAGAAGACACAAЖCUGGGGAGACACCUUACAUGUACACUGAGUGGGGAGACAGCUUUGGCAGUAUGUCAGUCCUCAUCAAAAACCCAAGGЖCACACUCUGGGGGAAAGCCUUAUGUGUGCAGGGAAUGUGGGCGAGGCUUUACGUGGAAGUCAAACCUGAUCACACAUCAGAGGЖCACACUCAGGGGAGAAACCUUAUGUGUGCAAGGЖUUGUGGACGAGGCUUUACUUGGAAGUCGAACCUCUUUACACAUCAGCGGACACACUCAGGGCUCAAGCCUUAUGUGUGCAAGGAAUGUGGGCAGAGCUUUAGCCUGAAGUCAAACCUCAUUACCCACCAGAGGGCGCACACUGGGGAGAAGCCUUAUGUUUGCAGGGAAUGUGGGCGUGGCUUUCGCCAGCAUUCACACCUGGUCAGACACAAGAGGACACAUUCAGGAGAGAAGCCUUACAUUUGCAGGGAGUGUGAGCAAGGCUUUAGCCAGAAGUCACACCUCAUCAGACACUUAAGGACACACACAGGAGAGAAGCCUUAUGUAUGCACAGAAUGUGGGCGUCACUUUAGCUGGAAAUCAAACCUCAAAACACACCAGAGGACACACUCAGGGGUUAAACCUUAUGUCUGCCUGGAGUGCGGGCAGUGCUUUAGCCUGAAGUCAAACCUUAACAAACACCAGAGGUCACACACGGGGGAGAAGCCAUUUGUAUGUACGGAGUGUGGGCGAGGCUUUACCCGGAAAUCAACCCUGAGCACGCACCAGAGGACACACUCAGGGGAGAAGCCAUUUGUAUGUGCUGAGUGUGGACGAGGCUUUAAUGAUAAGUCCACCCUCAUUUCACACCAGAGGACACAUUCAGGGGAAAAGCCUUUUAUGUGCAGGGAGUGUGGCAGAAGGUUUCGGCAGAAGCCUAACCUGUUUAGGCACAAGAGGGCACACUCAGGUGCCUUUGUGUGCAGGGAGUGUGGGCAAGGCUUUUGUGCUAAGUUAACUCUCAUUAAACACCAGAGAGCACACGCAGGGGGGAAGCCUCAUGUGUGCAGGGAGUGUGGGCAAGGCUUUAGCCGGCAGUCACACCUCAUUAGACACCAGAGGACACAUUCAGGAGAGAAGCCUUAUAUUUGCAGAAAGUGUGGACGGGGCUUUAGUCGGAAGUCCAACCUUAUCAGACAUCAGAGGACACACUCAGGAUAGAAACUPUAUGUGUAUAGGGAAUGUGGUACAGCCUPUAGCCAGGAGUCAUACUUCAUCAGACACCAGAGGACACACACAGUGCUGUGGCUUUUUCAGCCAUUGCUAGAUACCAAAGUGGAGACAUUCUGUGUGUGAUUAUGCAUGAGЖCUGUACUGGUAAGACUUGUAUCUCCAPCCACCUGAAGGAGAAUUGCUGGCUCAUUUUCAGGAGCCCUGCCCUUCCUCACUGUGGAUGGUGGGUUGUGGAAACCCGGUCAGGUAAUGAUAGUGGCAGGAGGCAGUCAAAUGCCCAGGCAGAUAGGGGUGGGUACCUGGUGAAACCCAACCUUAAAGCUGAAGACAGUCCCGGCUAAAUCCUCAUACUGAAUUGAGAACCUGUCUUCCCAUUUGGUGUGCUUUCCUCCGAUUGAUCCCAACCCUUCACCUAUUUUACGUAUACCUGCCCUUUCCUAAUUGGUUUUUACACUGCUGUGCCCACCUUUUGAGUGGUGCCUUUGCAUACUUACAAAUCAGUCAACGUGUAUUCCCCUAUUCUGAGCCCAUAAAAGACCCAGACUCAGCUGCAGUGAGGAGAGAAAUCACCCUGCUGUGGGGGUUGGGGЖCCACUCCCUGCAUCCCCUCUCCACUGAGAGCUGUUCUUUUGCUCAAUAAAAUUCUUUUCUACCCAUCCUCA
Sequence (SHORT NAMES ENCODING) AACUGACGUGCUGAGCAGCUAAUUCAGUGCCUGAGGUUACACUAGUUGUGGACAGAGAUGGGUUCCAAAUCCAGAUAGUAUGGGUUGAAUCCACGCUCUUCAUCACCACCCACUUUCCCUCCUUAGGCCUGAGCAGGCACGUGGCAGCAUUUGGUAGAGGAAGGAGUGAGCCCUGCUGUAGGAACUAUAUAUAUUGGCGUUCGUGGCAUUCAGGGAUGUGGCUGUGUACUUCACCCAGGAGGAGUGGAGGUUGUUGAGCCCUGCUCAGAGGACCCUGCACAGGGAGGUGAUGCUGGAGACUUAUAACCAUCUGGUCUCACUGGAAAUUCCAUCUUCUAAACCAAAACUCAUUGCUCAGCUGGAGCGAGGGGAAGCGCCCUGGAGAGAGGAGAGAAAAUGUCCACUGGACCUCUGUCCAGAAUCGAAGCCAGAAAUUCAACUUAGUCCCUCCUGCCCUCUGAUUUUCUCCAGUCAGCAAGCUCUCAGCCAACAUGUGUGGCUGAGUCAUCUCUCUCAGCUGUUUUCAAGUUUAUGGGCAGGAAAUCCUCUCCACCUGGGAAAACACUAUCCAGAAGAUCAGAAACAACAGCAGGAUCCAUUCUGCUUUAGUGGCAAAGCAGAAUGGAUUCAAGAGGGAGAAGACUCCAGACUCCUGUUUGGGAGAGUAAGCAAAAAUGGCACUUCAAAGGCACUUUCCAGCCCACCUGAAGAACAACAGCCAGCACAGUCCAAGGAAGACAACACAGUGGUGGAUAUAGGGUCCAGCCCUGAACGGAGGGCAGAUCUAGAGGAAACAGACAAAGUAUUGCAUGGUUUAGAAGUCUCAGGAUUUGGAGAAAUCAAAUAUGAAGAGUUUGGGCCAGGCUUUAUCAAGGAGUCAAACCUCCUUAGCCUCCAGAAGACACAAm6ACUGGGGAGACACCUUACAUGUACACUGAGUGGGGAGACAGCUUUGGCAGUAUGUCAGUCCUCAUCAAAAACCCAAGGm6ACACACUCUGGGGGAAAGCCUUAUGUGUGCAGGGAAUGUGGGCGAGGCUUUACGUGGAAGUCAAACCUGAUCACACAUCAGAGGm6ACACACUCAGGGGAGAAACCUUAUGUGUGCAAGGm6AUUGUGGACGAGGCUUUACUUGGAAGUCGAACCUCUUUACACAUCAGCGGACACACUCAGGGCUCAAGCCUUAUGUGUGCAAGGAAUGUGGGCAGAGCUUUAGCCUGAAGUCAAACCUCAUUACCCACCAGAGGGCGCACACUGGGGAGAAGCCUUAUGUUUGCAGGGAAUGUGGGCGUGGCUUUCGCCAGCAUUCACACCUGGUCAGACACAAGAGGACACAUUCAGGAGAGAAGCCUUACAUUUGCAGGGAGUGUGAGCAAGGCUUUAGCCAGAAGUCACACCUCAUCAGACACUUAAGGACACACACAGGAGAGAAGCCUUAUGUAUGCACAGAAUGUGGGCGUCACUUUAGCUGGAAAUCAAACCUCAAAACACACCAGAGGACACACUCAGGGGUUAAACCUUAUGUCUGCCUGGAGUGCGGGCAGUGCUUUAGCCUGAAGUCAAACCUUAACAAACACCAGAGGUCACACACGGGGGAGAAGCCAUUUGUAUGUACGGAGUGUGGGCGAGGCUUUACCCGGAAAUCAACCCUGAGCACGCACCAGAGGACACACUCAGGGGAGAAGCCAUUUGUAUGUGCUGAGUGUGGACGAGGCUUUAAUGAUAAGUCCACCCUCAUUUCACACCAGAGGACACAUUCAGGGGAAAAGCCUUUUAUGUGCAGGGAGUGUGGCAGAAGGUUUCGGCAGAAGCCUAACCUGUUUAGGCACAAGAGGGCACACUCAGGUGCCUUUGUGUGCAGGGAGUGUGGGCAAGGCUUUUGUGCUAAGUUAACUCUCAUUAAACACCAGAGAGCACACGCAGGGGGGAAGCCUCAUGUGUGCAGGGAGUGUGGGCAAGGCUUUAGCCGGCAGUCACACCUCAUUAGACACCAGAGGACACAUUCAGGAGAGAAGCCUUAUAUUUGCAGAAAGUGUGGACGGGGCUUUAGUCGGAAGUCCAACCUUAUCAGACAUCAGAGGACACACUCAGGAUAGAAACUYUAUGUGUAUAGGGAAUGUGGUACAGCCUYUAGCCAGGAGUCAUACUUCAUCAGACACCAGAGGACACACACAGUGCUGUGGCUUUUUCAGCCAUUGCUAGAUACCAAAGUGGAGACAUUCUGUGUGUGAUUAUGCAUGAGm6ACUGUACUGGUAAGACUUGUAUCUCCAYCCACCUGAAGGAGAAUUGCUGGCUCAUUUUCAGGAGCCCUGCCCUUCCUCACUGUGGAUGGUGGGUUGUGGAAACCCGGUCAGGUAAUGAUAGUGGCAGGAGGCAGUCAAAUGCCCAGGCAGAUAGGGGUGGGUACCUGGUGAAACCCAACCUUAAAGCUGAAGACAGUCCCGGCUAAAUCCUCAUACUGAAUUGAGAACCUGUCUUCCCAUUUGGUGUGCUUUCCUCCGAUUGAUCCCAACCCUUCACCUAUUUUACGUAUACCUGCCCUUUCCUAAUUGGUUUUUACACUGCUGUGCCCACCUUUUGAGUGGUGCCUUUGCAUACUUACAAAUCAGUCAACGUGUAUUCCCCUAUUCUGAGCCCAUAAAAGACCCAGACUCAGCUGCAGUGAGGAGAGAAAUCACCCUGCUGUGGGGGUUGGGGm6ACCACUCCCUGCAUCCCCUCUCCACUGAGAGCUGUUCUUUUGCUCAAUAAAAUUCUUUUCUACCCAUCCUCA
Sequence (MODOMICS CODE ENCODING) AACUGACGUGCUGAGCAGCUAAUUCAGUGCCUGAGGUUACACUAGUUGUGGACAGAGAUGGGUUCCAAAUCCAGAUAGUAUGGGUUGAAUCCACGCUCUUCAUCACCACCCACUUUCCCUCCUUAGGCCUGAGCAGGCACGUGGCAGCAUUUGGUAGAGGAAGGAGUGAGCCCUGCUGUAGGAACUAUAUAUAUUGGCGUUCGUGGCAUUCAGGGAUGUGGCUGUGUACUUCACCCAGGAGGAGUGGAGGUUGUUGAGCCCUGCUCAGAGGACCCUGCACAGGGAGGUGAUGCUGGAGACUUAUAACCAUCUGGUCUCACUGGAAAUUCCAUCUUCUAAACCAAAACUCAUUGCUCAGCUGGAGCGAGGGGAAGCGCCCUGGAGAGAGGAGAGAAAAUGUCCACUGGACCUCUGUCCAGAAUCGAAGCCAGAAAUUCAACUUAGUCCCUCCUGCCCUCUGAUUUUCUCCAGUCAGCAAGCUCUCAGCCAACAUGUGUGGCUGAGUCAUCUCUCUCAGCUGUUUUCAAGUUUAUGGGCAGGAAAUCCUCUCCACCUGGGAAAACACUAUCCAGAAGAUCAGAAACAACAGCAGGAUCCAUUCUGCUUUAGUGGCAAAGCAGAAUGGAUUCAAGAGGGAGAAGACUCCAGACUCCUGUUUGGGAGAGUAAGCAAAAAUGGCACUUCAAAGGCACUUUCCAGCCCACCUGAAGAACAACAGCCAGCACAGUCCAAGGAAGACAACACAGUGGUGGAUAUAGGGUCCAGCCCUGAACGGAGGGCAGAUCUAGAGGAAACAGACAAAGUAUUGCAUGGUUUAGAAGUCUCAGGAUUUGGAGAAAUCAAAUAUGAAGAGUUUGGGCCAGGCUUUAUCAAGGAGUCAAACCUCCUUAGCCUCCAGAAGACACAA2000000006ACUGGGGAGACACCUUACAUGUACACUGAGUGGGGAGACAGCUUUGGCAGUAUGUCAGUCCUCAUCAAAAACCCAAGG2000000006ACACACUCUGGGGGAAAGCCUUAUGUGUGCAGGGAAUGUGGGCGAGGCUUUACGUGGAAGUCAAACCUGAUCACACAUCAGAGG2000000006ACACACUCAGGGGAGAAACCUUAUGUGUGCAAGG2000000006AUUGUGGACGAGGCUUUACUUGGAAGUCGAACCUCUUUACACAUCAGCGGACACACUCAGGGCUCAAGCCUUAUGUGUGCAAGGAAUGUGGGCAGAGCUUUAGCCUGAAGUCAAACCUCAUUACCCACCAGAGGGCGCACACUGGGGAGAAGCCUUAUGUUUGCAGGGAAUGUGGGCGUGGCUUUCGCCAGCAUUCACACCUGGUCAGACACAAGAGGACACAUUCAGGAGAGAAGCCUUACAUUUGCAGGGAGUGUGAGCAAGGCUUUAGCCAGAAGUCACACCUCAUCAGACACUUAAGGACACACACAGGAGAGAAGCCUUAUGUAUGCACAGAAUGUGGGCGUCACUUUAGCUGGAAAUCAAACCUCAAAACACACCAGAGGACACACUCAGGGGUUAAACCUUAUGUCUGCCUGGAGUGCGGGCAGUGCUUUAGCCUGAAGUCAAACCUUAACAAACACCAGAGGUCACACACGGGGGAGAAGCCAUUUGUAUGUACGGAGUGUGGGCGAGGCUUUACCCGGAAAUCAACCCUGAGCACGCACCAGAGGACACACUCAGGGGAGAAGCCAUUUGUAUGUGCUGAGUGUGGACGAGGCUUUAAUGAUAAGUCCACCCUCAUUUCACACCAGAGGACACAUUCAGGGGAAAAGCCUUUUAUGUGCAGGGAGUGUGGCAGAAGGUUUCGGCAGAAGCCUAACCUGUUUAGGCACAAGAGGGCACACUCAGGUGCCUUUGUGUGCAGGGAGUGUGGGCAAGGCUUUUGUGCUAAGUUAACUCUCAUUAAACACCAGAGAGCACACGCAGGGGGGAAGCCUCAUGUGUGCAGGGAGUGUGGGCAAGGCUUUAGCCGGCAGUCACACCUCAUUAGACACCAGAGGACACAUUCAGGAGAGAAGCCUUAUAUUUGCAGAAAGUGUGGACGGGGCUUUAGUCGGAAGUCCAACCUUAUCAGACAUCAGAGGACACACUCAGGAUAGAAACU2000000009UUAUGUGUAUAGGGAAUGUGGUACAGCCU2000000009UUAGCCAGGAGUCAUACUUCAUCAGACACCAGAGGACACACACAGUGCUGUGGCUUUUUCAGCCAUUGCUAGAUACCAAAGUGGAGACAUUCUGUGUGUGAUUAUGCAUGAG2000000006ACUGUACUGGUAAGACUUGUAUCUCCA2000000009UCCACCUGAAGGAGAAUUGCUGGCUCAUUUUCAGGAGCCCUGCCCUUCCUCACUGUGGAUGGUGGGUUGUGGAAACCCGGUCAGGUAAUGAUAGUGGCAGGAGGCAGUCAAAUGCCCAGGCAGAUAGGGGUGGGUACCUGGUGAAACCCAACCUUAAAGCUGAAGACAGUCCCGGCUAAAUCCUCAUACUGAAUUGAGAACCUGUCUUCCCAUUUGGUGUGCUUUCCUCCGAUUGAUCCCAACCCUUCACCUAUUUUACGUAUACCUGCCCUUUCCUAAUUGGUUUUUACACUGCUGUGCCCACCUUUUGAGUGGUGCCUUUGCAUACUUACAAAUCAGUCAACGUGUAUUCCCCUAUUCUGAGCCCAUAAAAGACCCAGACUCAGCUGCAGUGAGGAGAGAAAUCACCCUGCUGUGGGGGUUGGGG2000000006ACCACUCCCUGCAUCCCCUCUCCACUGAGAGCUGUUCUUUUGCUCAAUAAAAUUCUUUUCUACCCAUCCUCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 908 986 1070 1104 2092 2121 2233 2260 2687
Modification Positions m6A m6A m6A m6A Y Y m6A Y m6A
Genomic Coordinates 19:37362597:+ 19:37362675:+ 19:37362759:+ 19:37362793:+ 19:37363781:+ 19:37363810:+ 19:37363922:+ 19:37363949:+ 19:37364376:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
BtsJQJ3DteUq
S9vNeQQYrhac
BtsJQJ3DteUq
S9vNeQQYrhac
Yfn77uLS5tv8
6UuHp6YApVKv
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
BtsJQJ3DteUq
S9vNeQQYrhac
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8