General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000439365
Gene ID:	ENSG00000130751
Gene Name:	NPAS1
Sequence (UNICHARACTER ENCODING)	AAUGGGAGUCAUGGCAGCCAUGGUGGUCAGGUGGAGAUGACGGGCAGCAGCGUCUUCGACUACAUUCACCCUGGGGACCACUCAGAGGUGCUGGAGCAACUGGGGCUGCGGACGCCGACGCCCGGCCCCCCAACCCCGCCCUCCGUCUCCUCUUCCUCCUCCUCUUCCUCUUCGCUUGCAGAUACCCCCGAGAUCGAGGCCAGCCUCACCAAGGUGCCCCCCUCCUCCCUGGUCCAGGAGCGCUCCUUCUUUGUCCGCAUGAAAUCCACGCUCACCAAGAGGGGGCUGCACGUCAAGGCCUCAGGGUACAAGGUCAUCCACGUGACUGGGCGCCUUCGGGCCCACGCCCUGGGCCUUGUGGCCCUCGGGCACACGUUGCCCCCGGCCCCCCUGGCUGAGCUGCCACUCCAUGGACACAUGAUCGUCUUCCGUCUCAGCCUGGGUCUCACCAUCCUUGCUUGUGAGAGCAGAGUCAGCGACCACAUGGACCUGGGGCCCUCAGAGCUGGUGGGCCGCAGCUGCUACCAGUUUGUCCACGGACAGGACGCCACGAGGAUCCGCCAGAGCCACGUGGACUCGUGCCGGGGGCUUCGUGUGGCUGCAGUCUGUGGCCACAGUGGCUGGGAGCGGGAAGAGCCCCGGGGAGCACCAUGUGCUUUGGGUCAGCCACGUGCUCAGCCAAGCCGAGGGUGGCCAAЖCUCCUUUGGAUGCCUUCCAGCUUCCAGCCAGCGUGGCCUGUGAGGAGGCAUCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCUCCGACGGAAGGGAAGCAGGCUGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCAUCAAAGUGGAGCCCGGCCCGAGGGAAACCAAAGGCUCCGAGGACAGUGGCGACGAGGAUCCCPCCAGCCACCCGGCCACACCGAGGCCCGAGUUCACCUCUGUCAPCCGGGCAGGGGUCCUGAAGCAGGAUCCGGUGCGGCCAUGGGGCCUGGCGCCUCCCGGGGACCCCCCGCCCACCCPCCUGCACGCGGGCUUCCUGCCGCCGGUGGUGCGGGGCCUGUGCACACCCGGCACCAPCCGCUACGGCCCCGCGGAGCUGGGCCUGGUGUACCCGCACCUGCAGAGGCUGGGUCCGGGCCCCGCGCUCCCGGAGGCCUUUUACCCGCCCCUGGGCCUGCCCUACCCGGGGCCCGCGGGCACCAGGCUGCCGCGGAAGGGGGЖCUGAGGЖCUGGCAGAGCUGCCGGCGCCGGACCCUGCGACAACCGGGGUCCCCCAGGЖCAGUAGGCCCGGCUCUGCCCGUAGCCCUGAGAAUUAAACGCCGGCUCUCCCUGC
Sequence (SHORT NAMES ENCODING)	AAUGGGAGUCAUGGCAGCCAUGGUGGUCAGGUGGAGAUGACGGGCAGCAGCGUCUUCGACUACAUUCACCCUGGGGACCACUCAGAGGUGCUGGAGCAACUGGGGCUGCGGACGCCGACGCCCGGCCCCCCAACCCCGCCCUCCGUCUCCUCUUCCUCCUCCUCUUCCUCUUCGCUUGCAGAUACCCCCGAGAUCGAGGCCAGCCUCACCAAGGUGCCCCCCUCCUCCCUGGUCCAGGAGCGCUCCUUCUUUGUCCGCAUGAAAUCCACGCUCACCAAGAGGGGGCUGCACGUCAAGGCCUCAGGGUACAAGGUCAUCCACGUGACUGGGCGCCUUCGGGCCCACGCCCUGGGCCUUGUGGCCCUCGGGCACACGUUGCCCCCGGCCCCCCUGGCUGAGCUGCCACUCCAUGGACACAUGAUCGUCUUCCGUCUCAGCCUGGGUCUCACCAUCCUUGCUUGUGAGAGCAGAGUCAGCGACCACAUGGACCUGGGGCCCUCAGAGCUGGUGGGCCGCAGCUGCUACCAGUUUGUCCACGGACAGGACGCCACGAGGAUCCGCCAGAGCCACGUGGACUCGUGCCGGGGGCUUCGUGUGGCUGCAGUCUGUGGCCACAGUGGCUGGGAGCGGGAAGAGCCCCGGGGAGCACCAUGUGCUUUGGGUCAGCCACGUGCUCAGCCAAGCCGAGGGUGGCCAAm6ACUCCUUUGGAUGCCUUCCAGCUUCCAGCCAGCGUGGCCUGUGAGGAGGCAUCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCUCCGACGGAAGGGAAGCAGGCUGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCAUCAAAGUGGAGCCCGGCCCGAGGGAAACCAAAGGCUCCGAGGACAGUGGCGACGAGGAUCCCYCCAGCCACCCGGCCACACCGAGGCCCGAGUUCACCUCUGUCAYCCGGGCAGGGGUCCUGAAGCAGGAUCCGGUGCGGCCAUGGGGCCUGGCGCCUCCCGGGGACCCCCCGCCCACCCYCCUGCACGCGGGCUUCCUGCCGCCGGUGGUGCGGGGCCUGUGCACACCCGGCACCAYCCGCUACGGCCCCGCGGAGCUGGGCCUGGUGUACCCGCACCUGCAGAGGCUGGGUCCGGGCCCCGCGCUCCCGGAGGCCUUUUACCCGCCCCUGGGCCUGCCCUACCCGGGGCCCGCGGGCACCAGGCUGCCGCGGAAGGGGGm6ACUGAGGm6ACUGGCAGAGCUGCCGGCGCCGGACCCUGCGACAACCGGGGUCCCCCAGGm6ACAGUAGGCCCGGCUCUGCCCGUAGCCCUGAGAAUUAAACGCCGGCUCUCCCUGC
Sequence (MODOMICS CODE ENCODING)	AAUGGGAGUCAUGGCAGCCAUGGUGGUCAGGUGGAGAUGACGGGCAGCAGCGUCUUCGACUACAUUCACCCUGGGGACCACUCAGAGGUGCUGGAGCAACUGGGGCUGCGGACGCCGACGCCCGGCCCCCCAACCCCGCCCUCCGUCUCCUCUUCCUCCUCCUCUUCCUCUUCGCUUGCAGAUACCCCCGAGAUCGAGGCCAGCCUCACCAAGGUGCCCCCCUCCUCCCUGGUCCAGGAGCGCUCCUUCUUUGUCCGCAUGAAAUCCACGCUCACCAAGAGGGGGCUGCACGUCAAGGCCUCAGGGUACAAGGUCAUCCACGUGACUGGGCGCCUUCGGGCCCACGCCCUGGGCCUUGUGGCCCUCGGGCACACGUUGCCCCCGGCCCCCCUGGCUGAGCUGCCACUCCAUGGACACAUGAUCGUCUUCCGUCUCAGCCUGGGUCUCACCAUCCUUGCUUGUGAGAGCAGAGUCAGCGACCACAUGGACCUGGGGCCCUCAGAGCUGGUGGGCCGCAGCUGCUACCAGUUUGUCCACGGACAGGACGCCACGAGGAUCCGCCAGAGCCACGUGGACUCGUGCCGGGGGCUUCGUGUGGCUGCAGUCUGUGGCCACAGUGGCUGGGAGCGGGAAGAGCCCCGGGGAGCACCAUGUGCUUUGGGUCAGCCACGUGCUCAGCCAAGCCGAGGGUGGCCAA2000000006ACUCCUUUGGAUGCCUUCCAGCUUCCAGCCAGCGUGGCCUGUGAGGAGGCAUCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCUCCGACGGAAGGGAAGCAGGCUGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCAUCAAAGUGGAGCCCGGCCCGAGGGAAACCAAAGGCUCCGAGGACAGUGGCGACGAGGAUCCC2000000009UCCAGCCACCCGGCCACACCGAGGCCCGAGUUCACCUCUGUCA2000000009UCCGGGCAGGGGUCCUGAAGCAGGAUCCGGUGCGGCCAUGGGGCCUGGCGCCUCCCGGGGACCCCCCGCCCACCC2000000009UCCUGCACGCGGGCUUCCUGCCGCCGGUGGUGCGGGGCCUGUGCACACCCGGCACCA2000000009UCCGCUACGGCCCCGCGGAGCUGGGCCUGGUGUACCCGCACCUGCAGAGGCUGGGUCCGGGCCCCGCGCUCCCGGAGGCCUUUUACCCGCCCCUGGGCCUGCCCUACCCGGGGCCCGCGGGCACCAGGCUGCCGCGGAAGGGGG2000000006ACUGAGG2000000006ACUGGCAGAGCUGCCGGCGCCGGACCCUGCGACAACCGGGGUCCCCCAGG2000000006ACAGUAGGCCCGGCUCUGCCCGUAGCCCUGAGAAUUAAACGCCGGCUCUCCCUGC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	698	911	954	1029	1086	1230	1237	1287
Modification Positions	m6A	Y	Y	Y	Y	m6A	m6A	m6A
Genomic Coordinates	19:47042829:+	19:47045328:+	19:47045371:+	19:47045446:+	19:47045503:+	19:47045647:+	19:47045654:+	19:47045704:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	Ap2q43bQLNek gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx Ap2q43bQLNek msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn VyCX26p5UBRL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8