Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000313040
Gene ID: ENSG00000131115
Gene Name: ZNF227
Sequence (UNICHARACTER ENCODING) AGAGCCACUUCCGCCCCGGAAAGCGAGGCCGCCACCAUCUUUUGGGUCCGGGAGGAUUGAGUCAUCGGGCUCCAAUGCGUGGGGAUGUUUACCGCCGUUUAUCCGGGAUAGAGACUCCAUCGUGCUGACAGCAUCCUUUUAUUCACCGCCUCCGAAUUUGCAAAGAGGAGGAAGGAGGGACUUCUUGGCUUCUCCCAGCAUAGCCCCAGUUAUGCCAUCUCAGAACUAUGACCUUCCCCAGAAGAAGCAGGAGAAAAUGACCAAGUUUCAGGAGGCUGUGACAUUCAAGGAUGUGGCUGUGGUCUUCUCCAGGGAGGAACUGCGACUGCUCGAUCUUACCCAGAGGAAGCUGUACCGAGAUGUCAUGGUGGAGAACUUCAAGAACCUGGUUGCAGUGGGGCAUCUUCCCUUCCAACCAGAUAUGGUAUCCCAAUUGGAAGCAGAAGAAAAGCUUUGGAUGAUGGAAACAGAAACCCAAAGAAGCAGCAAGCAUCAAAAUAAGAUGGAAACACUCCAAAAAUUUGCAUUAAAAUACCUUUCAAAUCAAGAGCUGUCCUGCUGGCAAAUCUGGAAACAGGUUGCAAGUGAAUUAACCAGGUGUCUUCAGGGGAAGAGUUCCCAGUUAUUACAAGGUGЖCUCUAUUCAGGUUUCUGAAAAUGAGAACAAUAUAAUGAACCCUAAAGGAGAUAGCUCUAUUUAUAUUGAAAAUCAAGAGUUUCCAUUUUGGAGAACCCAGCAUUCUUGCGGGAAUACAUAUCUGAGUGAGUCACAGAUUCAGAGUAGAGGUAAGCAAAUUGAUGUGAAAAAUAACCUGCAAAUACAUGAAGACUUCAUGAAGAAAUCACCAUUUCAUGAGCAUAUUAAAACUGACACAGAACCAAAACCCUGCAAAGGUAAUGAAUAUGGCAAAAUCAUUAGUGAUGGCUCCAAUCAGAAAUUACCCUUAGGAGAGAAACCCCAUCCAUGUGGUGAGUGUGGAAGGGGCUUCAGUUAUAGCCCAAGGCUUCCCCUUCAUCCGAAUGUUCAUACAGGAGAAAAAUGCUUCAGUCAAAGCUCACAUCUGCGAACUCAUCAGAGAAUUCACCCAGGAGAGAAЖCUCAAUAGAUGUCAUGAAUCUGGUGAUUGCUUCAAUAAGAGCUCUUUUCAUUCUUAUCAAUCUAAUCAUACAGGAGAGAAGUCUUAUAGAUGCGACAGUUGCGGCAAGGGAUUCAGUAGCAGCACGGGUCUUAUCAUUCAUUACAGAЖCUCAUACUGGAGAGAAACCCUAUAAAUGCGAGGAAUGUGGUAAAUGCUUUAGUCAAAGUUCAAAUUUUCAGUGCCAUCAGAGAGUCCACACUGAAGAAAAACCAUACAAAUGCGAAGAGUGUGGUAAGGGCUUCGGUUGGAGUGUUAAUCUCCGUGUUCACCAGAGGGUCCACAGGGGUGAGAAGCCCUAUAAAUGUGAGGAAUGUGGUAAGGGCUUCACUCAGGCUGCACAUUUUCACAUCCAUCAGAGAGUCCACACUGGAGAGAAACCCUACAAGUGUGAUGUGUGUGGUAAGGGCUUCAGCCACAAUUCACCAUUAAUAUGCCAUCGGAGAGUCCACACAGGAGAGAAGCCAUACAAGUGUGAGGCGUGUGGGAAAGGCUUUACCCGUAAUACAGAUCUGCAUAUUCAUUUCAGAGUUCACACGGGAGAGAAACCCUAUAAAUGUAAGGAGUGUGGUAAGGGCUUCAGUCAGGCUUCAAAUCUUCAAGUCCAUCAGAAUGUCCACACUGGGGAGAAACGAUUCAAGUGUGAAACGUGUGGGAAGGGCUUCAGUCAGUCCUCAAAGCUUCAAACCCAUCAGCGAGUCCACACUGGAGAGAAACCAUAUAGAUGUGAUGUGUGUGGUAAGGЖCUUCAGUUAUAGUUCAAAUCUUAAACUACACCAAGUAAUUCACACUGGAGAAAAACCAUAUAAAUGUGAGGAAUGUGGGAAGGGCUUCAGUUGGAGAUCAAAUCUUCAUGCACAUCAAAGAGUUCACUCAGGAGAAAAACCCUAUAAAUGUGAGCAGUGUGAUAAGAGCUUCAGUCAGGCCAUAGAUUUUCGGGUACAUCAGAGAGUCCAUACUGGAGAGAAGCCAUACAAAUGUGGUGUCUGUGGUAAGGGCUUCAGUCAGUCCUCUGGUCUUCAAUCCCAUCAGAGAGUCCACACGGGGGAAAAGCCAUACAAAUGUGAUGUGUGUGGAAAGGGCUUUAGAUACAGUUCGCAGUUUAUAUACCAUCAGAGAGGCCACACUGGAGAAAAACCUUACAAAUGUGAAGAGUGUGGGAAAGGCUUUGGUAGGAGCUUGAAUCUUCGCCAUCAUCAGAGGGUCCACACGGGAGAGAAACCCCAUAUAUGUGAGGAGUGUGGUAAGGCCUUCAGUCUCCCCUCAAAUCUUCGAGUCCACCUGGGUGUUCACACCAGGGAAAAЖCUCUUUAAAUGUGAAGAGUGUGGUAAAGGCUUCAGUCAGAGUGCACGUCUUGAAGCCCAUCAGAGAGUCCACACUGGAGAAAAACCAUACAAAUGUGACAUAUGUGAUAAGGЖCUUCCGUCACCGUUCACGUCUUACAUAUCAUCAGAAAGUCCAUACUGGUAAAAAGCUUUAGAAAUGAGAAAUGUGUUACCAACUUUUGUCUGAAUGCACAUCUUCAAGUUUUUGGCUAGUCCAUGCUGGUGGUAAACCCUGUAAAACUACUGAGAGUGGAAGGGGGUUUGUUCACACUUGGAAUCUUUCUAACAAAUCCAUCAAGAUGAUAACACAGAACCAUGAACAGGAAUAGAACUCGUAUUUAGGGGAGAAAUAGGGCUGGUGGCUCUCUUGGUAAGAUCUAGUUAAUAUAAAUGAUCACCUUUCAUUGUGAAUAUAUGCCUGAAGAUAAUGUGUGGAAGGAUAUUUGCCAUAUGCUAACUGGUUUUUUGGCCAGGGAGAGUUUUGGGUUAUUAUCCCUUUUCUUUAAUUUUCAUUUUAUACUUACAGUGAUCAUUAUUUUCAUAAAAGCUGUAAAGCUAUGAAAAAUGAAUAAAAUUACUAAAAAUUUUCUGUA
Sequence (SHORT NAMES ENCODING) AGAGCCACUUCCGCCCCGGAAAGCGAGGCCGCCACCAUCUUUUGGGUCCGGGAGGAUUGAGUCAUCGGGCUCCAAUGCGUGGGGAUGUUUACCGCCGUUUAUCCGGGAUAGAGACUCCAUCGUGCUGACAGCAUCCUUUUAUUCACCGCCUCCGAAUUUGCAAAGAGGAGGAAGGAGGGACUUCUUGGCUUCUCCCAGCAUAGCCCCAGUUAUGCCAUCUCAGAACUAUGACCUUCCCCAGAAGAAGCAGGAGAAAAUGACCAAGUUUCAGGAGGCUGUGACAUUCAAGGAUGUGGCUGUGGUCUUCUCCAGGGAGGAACUGCGACUGCUCGAUCUUACCCAGAGGAAGCUGUACCGAGAUGUCAUGGUGGAGAACUUCAAGAACCUGGUUGCAGUGGGGCAUCUUCCCUUCCAACCAGAUAUGGUAUCCCAAUUGGAAGCAGAAGAAAAGCUUUGGAUGAUGGAAACAGAAACCCAAAGAAGCAGCAAGCAUCAAAAUAAGAUGGAAACACUCCAAAAAUUUGCAUUAAAAUACCUUUCAAAUCAAGAGCUGUCCUGCUGGCAAAUCUGGAAACAGGUUGCAAGUGAAUUAACCAGGUGUCUUCAGGGGAAGAGUUCCCAGUUAUUACAAGGUGm6ACUCUAUUCAGGUUUCUGAAAAUGAGAACAAUAUAAUGAACCCUAAAGGAGAUAGCUCUAUUUAUAUUGAAAAUCAAGAGUUUCCAUUUUGGAGAACCCAGCAUUCUUGCGGGAAUACAUAUCUGAGUGAGUCACAGAUUCAGAGUAGAGGUAAGCAAAUUGAUGUGAAAAAUAACCUGCAAAUACAUGAAGACUUCAUGAAGAAAUCACCAUUUCAUGAGCAUAUUAAAACUGACACAGAACCAAAACCCUGCAAAGGUAAUGAAUAUGGCAAAAUCAUUAGUGAUGGCUCCAAUCAGAAAUUACCCUUAGGAGAGAAACCCCAUCCAUGUGGUGAGUGUGGAAGGGGCUUCAGUUAUAGCCCAAGGCUUCCCCUUCAUCCGAAUGUUCAUACAGGAGAAAAAUGCUUCAGUCAAAGCUCACAUCUGCGAACUCAUCAGAGAAUUCACCCAGGAGAGAAm6ACUCAAUAGAUGUCAUGAAUCUGGUGAUUGCUUCAAUAAGAGCUCUUUUCAUUCUUAUCAAUCUAAUCAUACAGGAGAGAAGUCUUAUAGAUGCGACAGUUGCGGCAAGGGAUUCAGUAGCAGCACGGGUCUUAUCAUUCAUUACAGAm6ACUCAUACUGGAGAGAAACCCUAUAAAUGCGAGGAAUGUGGUAAAUGCUUUAGUCAAAGUUCAAAUUUUCAGUGCCAUCAGAGAGUCCACACUGAAGAAAAACCAUACAAAUGCGAAGAGUGUGGUAAGGGCUUCGGUUGGAGUGUUAAUCUCCGUGUUCACCAGAGGGUCCACAGGGGUGAGAAGCCCUAUAAAUGUGAGGAAUGUGGUAAGGGCUUCACUCAGGCUGCACAUUUUCACAUCCAUCAGAGAGUCCACACUGGAGAGAAACCCUACAAGUGUGAUGUGUGUGGUAAGGGCUUCAGCCACAAUUCACCAUUAAUAUGCCAUCGGAGAGUCCACACAGGAGAGAAGCCAUACAAGUGUGAGGCGUGUGGGAAAGGCUUUACCCGUAAUACAGAUCUGCAUAUUCAUUUCAGAGUUCACACGGGAGAGAAACCCUAUAAAUGUAAGGAGUGUGGUAAGGGCUUCAGUCAGGCUUCAAAUCUUCAAGUCCAUCAGAAUGUCCACACUGGGGAGAAACGAUUCAAGUGUGAAACGUGUGGGAAGGGCUUCAGUCAGUCCUCAAAGCUUCAAACCCAUCAGCGAGUCCACACUGGAGAGAAACCAUAUAGAUGUGAUGUGUGUGGUAAGGm6ACUUCAGUUAUAGUUCAAAUCUUAAACUACACCAAGUAAUUCACACUGGAGAAAAACCAUAUAAAUGUGAGGAAUGUGGGAAGGGCUUCAGUUGGAGAUCAAAUCUUCAUGCACAUCAAAGAGUUCACUCAGGAGAAAAACCCUAUAAAUGUGAGCAGUGUGAUAAGAGCUUCAGUCAGGCCAUAGAUUUUCGGGUACAUCAGAGAGUCCAUACUGGAGAGAAGCCAUACAAAUGUGGUGUCUGUGGUAAGGGCUUCAGUCAGUCCUCUGGUCUUCAAUCCCAUCAGAGAGUCCACACGGGGGAAAAGCCAUACAAAUGUGAUGUGUGUGGAAAGGGCUUUAGAUACAGUUCGCAGUUUAUAUACCAUCAGAGAGGCCACACUGGAGAAAAACCUUACAAAUGUGAAGAGUGUGGGAAAGGCUUUGGUAGGAGCUUGAAUCUUCGCCAUCAUCAGAGGGUCCACACGGGAGAGAAACCCCAUAUAUGUGAGGAGUGUGGUAAGGCCUUCAGUCUCCCCUCAAAUCUUCGAGUCCACCUGGGUGUUCACACCAGGGAAAAm6ACUCUUUAAAUGUGAAGAGUGUGGUAAAGGCUUCAGUCAGAGUGCACGUCUUGAAGCCCAUCAGAGAGUCCACACUGGAGAAAAACCAUACAAAUGUGACAUAUGUGAUAAGGm6ACUUCCGUCACCGUUCACGUCUUACAUAUCAUCAGAAAGUCCAUACUGGUAAAAAGCUUUAGAAAUGAGAAAUGUGUUACCAACUUUUGUCUGAAUGCACAUCUUCAAGUUUUUGGCUAGUCCAUGCUGGUGGUAAACCCUGUAAAACUACUGAGAGUGGAAGGGGGUUUGUUCACACUUGGAAUCUUUCUAACAAAUCCAUCAAGAUGAUAACACAGAACCAUGAACAGGAAUAGAACUCGUAUUUAGGGGAGAAAUAGGGCUGGUGGCUCUCUUGGUAAGAUCUAGUUAAUAUAAAUGAUCACCUUUCAUUGUGAAUAUAUGCCUGAAGAUAAUGUGUGGAAGGAUAUUUGCCAUAUGCUAACUGGUUUUUUGGCCAGGGAGAGUUUUGGGUUAUUAUCCCUUUUCUUUAAUUUUCAUUUUAUACUUACAGUGAUCAUUAUUUUCAUAAAAGCUGUAAAGCUAUGAAAAAUGAAUAAAAUUACUAAAAAUUUUCUGUA
Sequence (MODOMICS CODE ENCODING) AGAGCCACUUCCGCCCCGGAAAGCGAGGCCGCCACCAUCUUUUGGGUCCGGGAGGAUUGAGUCAUCGGGCUCCAAUGCGUGGGGAUGUUUACCGCCGUUUAUCCGGGAUAGAGACUCCAUCGUGCUGACAGCAUCCUUUUAUUCACCGCCUCCGAAUUUGCAAAGAGGAGGAAGGAGGGACUUCUUGGCUUCUCCCAGCAUAGCCCCAGUUAUGCCAUCUCAGAACUAUGACCUUCCCCAGAAGAAGCAGGAGAAAAUGACCAAGUUUCAGGAGGCUGUGACAUUCAAGGAUGUGGCUGUGGUCUUCUCCAGGGAGGAACUGCGACUGCUCGAUCUUACCCAGAGGAAGCUGUACCGAGAUGUCAUGGUGGAGAACUUCAAGAACCUGGUUGCAGUGGGGCAUCUUCCCUUCCAACCAGAUAUGGUAUCCCAAUUGGAAGCAGAAGAAAAGCUUUGGAUGAUGGAAACAGAAACCCAAAGAAGCAGCAAGCAUCAAAAUAAGAUGGAAACACUCCAAAAAUUUGCAUUAAAAUACCUUUCAAAUCAAGAGCUGUCCUGCUGGCAAAUCUGGAAACAGGUUGCAAGUGAAUUAACCAGGUGUCUUCAGGGGAAGAGUUCCCAGUUAUUACAAGGUG2000000006ACUCUAUUCAGGUUUCUGAAAAUGAGAACAAUAUAAUGAACCCUAAAGGAGAUAGCUCUAUUUAUAUUGAAAAUCAAGAGUUUCCAUUUUGGAGAACCCAGCAUUCUUGCGGGAAUACAUAUCUGAGUGAGUCACAGAUUCAGAGUAGAGGUAAGCAAAUUGAUGUGAAAAAUAACCUGCAAAUACAUGAAGACUUCAUGAAGAAAUCACCAUUUCAUGAGCAUAUUAAAACUGACACAGAACCAAAACCCUGCAAAGGUAAUGAAUAUGGCAAAAUCAUUAGUGAUGGCUCCAAUCAGAAAUUACCCUUAGGAGAGAAACCCCAUCCAUGUGGUGAGUGUGGAAGGGGCUUCAGUUAUAGCCCAAGGCUUCCCCUUCAUCCGAAUGUUCAUACAGGAGAAAAAUGCUUCAGUCAAAGCUCACAUCUGCGAACUCAUCAGAGAAUUCACCCAGGAGAGAA2000000006ACUCAAUAGAUGUCAUGAAUCUGGUGAUUGCUUCAAUAAGAGCUCUUUUCAUUCUUAUCAAUCUAAUCAUACAGGAGAGAAGUCUUAUAGAUGCGACAGUUGCGGCAAGGGAUUCAGUAGCAGCACGGGUCUUAUCAUUCAUUACAGA2000000006ACUCAUACUGGAGAGAAACCCUAUAAAUGCGAGGAAUGUGGUAAAUGCUUUAGUCAAAGUUCAAAUUUUCAGUGCCAUCAGAGAGUCCACACUGAAGAAAAACCAUACAAAUGCGAAGAGUGUGGUAAGGGCUUCGGUUGGAGUGUUAAUCUCCGUGUUCACCAGAGGGUCCACAGGGGUGAGAAGCCCUAUAAAUGUGAGGAAUGUGGUAAGGGCUUCACUCAGGCUGCACAUUUUCACAUCCAUCAGAGAGUCCACACUGGAGAGAAACCCUACAAGUGUGAUGUGUGUGGUAAGGGCUUCAGCCACAAUUCACCAUUAAUAUGCCAUCGGAGAGUCCACACAGGAGAGAAGCCAUACAAGUGUGAGGCGUGUGGGAAAGGCUUUACCCGUAAUACAGAUCUGCAUAUUCAUUUCAGAGUUCACACGGGAGAGAAACCCUAUAAAUGUAAGGAGUGUGGUAAGGGCUUCAGUCAGGCUUCAAAUCUUCAAGUCCAUCAGAAUGUCCACACUGGGGAGAAACGAUUCAAGUGUGAAACGUGUGGGAAGGGCUUCAGUCAGUCCUCAAAGCUUCAAACCCAUCAGCGAGUCCACACUGGAGAGAAACCAUAUAGAUGUGAUGUGUGUGGUAAGG2000000006ACUUCAGUUAUAGUUCAAAUCUUAAACUACACCAAGUAAUUCACACUGGAGAAAAACCAUAUAAAUGUGAGGAAUGUGGGAAGGGCUUCAGUUGGAGAUCAAAUCUUCAUGCACAUCAAAGAGUUCACUCAGGAGAAAAACCCUAUAAAUGUGAGCAGUGUGAUAAGAGCUUCAGUCAGGCCAUAGAUUUUCGGGUACAUCAGAGAGUCCAUACUGGAGAGAAGCCAUACAAAUGUGGUGUCUGUGGUAAGGGCUUCAGUCAGUCCUCUGGUCUUCAAUCCCAUCAGAGAGUCCACACGGGGGAAAAGCCAUACAAAUGUGAUGUGUGUGGAAAGGGCUUUAGAUACAGUUCGCAGUUUAUAUACCAUCAGAGAGGCCACACUGGAGAAAAACCUUACAAAUGUGAAGAGUGUGGGAAAGGCUUUGGUAGGAGCUUGAAUCUUCGCCAUCAUCAGAGGGUCCACACGGGAGAGAAACCCCAUAUAUGUGAGGAGUGUGGUAAGGCCUUCAGUCUCCCCUCAAAUCUUCGAGUCCACCUGGGUGUUCACACCAGGGAAAA2000000006ACUCUUUAAAUGUGAAGAGUGUGGUAAAGGCUUCAGUCAGAGUGCACGUCUUGAAGCCCAUCAGAGAGUCCACACUGGAGAAAAACCAUACAAAUGUGACAUAUGUGAUAAGG2000000006ACUUCCGUCACCGUUCACGUCUUACAUAUCAUCAGAAAGUCCAUACUGGUAAAAAGCUUUAGAAAUGAGAAAUGUGUUACCAACUUUUGUCUGAAUGCACAUCUUCAAGUUUUUGGCUAGUCCAUGCUGGUGGUAAACCCUGUAAAACUACUGAGAGUGGAAGGGGGUUUGUUCACACUUGGAAUCUUUCUAACAAAUCCAUCAAGAUGAUAACACAGAACCAUGAACAGGAAUAGAACUCGUAUUUAGGGGAGAAAUAGGGCUGGUGGCUCUCUUGGUAAGAUCUAGUUAAUAUAAAUGAUCACCUUUCAUUGUGAAUAUAUGCCUGAAGAUAAUGUGUGGAAGGAUAUUUGCCAUAUGCUAACUGGUUUUUUGGCCAGGGAGAGUUUUGGGUUAUUAUCCCUUUUCUUUAAUUUUCAUUUUAUACUUACAGUGAUCAUUAUUUUCAUAAAAGCUGUAAAGCUAUGAAAAAUGAAUAAAAUUACUAAAAAUUUUCUGUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 636 1096 1244 1878 2437 2550
Modification Positions m6A m6A m6A m6A m6A m6A
Genomic Coordinates 19:44234855:+ 19:44235315:+ 19:44235463:+ 19:44236097:+ 19:44236656:+ 19:44236769:+
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs Mg9GixDBFQAT
VyCX26p5UBRL
Lny8GcCeVGc9
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
msuJfBpJvM5H
VyCX26p5UBRL
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
msuJfBpJvM5H
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
Lny8GcCeVGc9
BtsJQJ3DteUq