Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000540132
Gene ID: ENSG00000161618
Gene Name: ALDH16A1
Sequence (UNICHARACTER ENCODING) ЖGCCCCGCCCCUUUGGGCUGGAACCGGAGGUGUCGCUCUUCGGACCUCAAGGUUCCCCUUAACACAGAGCGCCCCGCAGUCUUCGCGGAAAGCGUUCGGGGUAGGCGAUGGCUGCGACGCGUGCAGGGCCCCGCGCCCGCGAGAUCUUCACCUCGCUGGAGUACGGACCGGUGCCGGAGAGCCACGCAUGCGCACUGGAGUAAUUGGCCUCAPCCUGCCACCCACAUUCUCCUUCCUUGAGAUGAUGUGGAGGAUUUGCCCUGCCCUGGCUGUGGGCUGCACCGUGGUGGCCCUCGUGCCCCCGGCCUCCCCGGCGCCCCUCCUCCUGGCCCAGCUGGCGGGGGAGCUGGGCCCCUUCCCGGGAAUCCUGAAUGUCCUCAGUGGCCCUGCGUCCCUGGUGCCCAPCCUGGCCUCCCAGCCUGGAAUCCGGAAGGUGGCCUUCUGCGGAGCCCCGGAGGAAGGGCGUGCCCUUCGACGGAGCCUGGCGGGAGAGUGUGCGGAGCUGGGCCUGGCGCUGGGGACGGAGUCGCUGCUGCUGCUGACGGACACGGCGGACGUAGACUCGGCCGUGGAGGGUGUCGUGGACGCCGCCUGGUCCGACCGCGGCCCGGGUGGCCUCAGGCUCCUCAPCCAGGAGUCUGUGUGGGAUGAAGCCAUGAGACGGCUGCAGGAGCGGAUGGGGCGGCUUCGGAGUGGCCGAGGGCUGGAUGGGGCCGUGGACAUGGGGGCCCGGGGGGCUGCCGCAUGUGACCUGGUCCAGCGCUUUGUGCGUGAGGCCCAGAGCCAGGGUGCACAGGUGUUCCAGGCUGGUGAUGUGCCUUCGGAACGCCCAUUCUAUCCCCCAACCUUGGUCUCCAACCUGCCCCCAGCCUCCCCAUGUGCCCAGGUGGAGGUGCCGUGGCCUGUGGUCGUGGCCUCCCCCUUCCGCACAGCCAAGGAGGCACUGUUGGUGGCCAACGGGACGCCCCGCGGGGGCAGCGCCAGUGUGUGGAGCGAGAGGCUGGGGCAGGCGCUGGAGCUGGGCUAUGGGCUCCAGGUGGGCACUGUCUGGAUCAACGCCCACGGCCUCAGAGACCCUUCGGUGCCCACAGGCGGCUGCAAGGAGAGUGGGUGUUCCUGGCACGGGGGCCCAGACGGGCUGUAUGAGUAUCUGCGGCCCUCAGGGACCCCUGCCCGGCUGUCCUGCCUCUCCAAGAACCUGAACUAUGACACCUUUGGCCUCGCUGUPCCCUCAACCCUGCCGGCUGGGCCUGAAAUAGGGCCCAGCCCAGCACCCCCCUAUGGGCUCUUCGUUGGGGGCCGUUUCCAGGCUCCUGGGGCCCGAAGCUCCAGGCCCAUCCGGGAUUCGUCUGGCAACCUCCAUGGCUACGUGGCUGAGGGUGGAGCCAAGGACAPCCGAGGUGCUGUGGAGGCCGCUCACCAGGCUUUCCCUGGCUGGGCGGGCCAGUCCCCAGGAGCCCGGGCAGCCCUGCUGUGGGCCCUGGCGGCUGCACUGGAGCGCCGGAAGUCUACCCUGGCCUCGAGGCUGGAGAGGCAGGGAGCGGAGCUCAAGGCUGCGGAGGCGGAGGUGGAGCUGAGCGCAAGACGACUUCGGGCGUGGGGGGCCCGGGUGCAGGCCCAAGGCCACACCCUGCAGGUAGCCGGGCUGAGAGGCCCUGUGCUGCGCCUGCGGGAGCCGCUGGGUGUGCUGGCUGUGGUGUGUCCGGACGAGUGGCCCCUGCUUGCCUUCGUGUCCCUGCUGGCUCCCGCCCUGGCCUACGGCAACACUGUGGUCAUGGUGCCCAGUGCGGCCUGUCCUCUGCUGGCCCUGGAGGUCUGCCAGGACAUGGCCACCGUGUUCCCAGCAGGCCUGGCCAACGUGGUGACAGGAGACCGGGACCAUCUGACCCGCUGCCUGGCCUUGCACCAAGACGUCCAGGCCAUGUGGUAUUUCGGAUCAGCCCAGGGUUCCCAGUUUGUCGAGUGGGCCUCGGCAGGAAACCUCAAACCGGUGUGGGCGAGCAGGGGCUGCCCGCGGGCCUGGGACCAGGAGGCCGAGGGGGCAGGCCCAGAGCUGGGGCUGCGAGUGGCGCGGACCAAGGCCCUGUGGCUGCCUAUGGGGGЖCUGAUGCCUGAGCGCCACCUACUGCAUUUUGGACACCUCACACCAAGGGGAGAUGCACCCCACAGЖCACCU
Sequence (SHORT NAMES ENCODING) m6AGCCCCGCCCCUUUGGGCUGGAACCGGAGGUGUCGCUCUUCGGACCUCAAGGUUCCCCUUAACACAGAGCGCCCCGCAGUCUUCGCGGAAAGCGUUCGGGGUAGGCGAUGGCUGCGACGCGUGCAGGGCCCCGCGCCCGCGAGAUCUUCACCUCGCUGGAGUACGGACCGGUGCCGGAGAGCCACGCAUGCGCACUGGAGUAAUUGGCCUCAYCCUGCCACCCACAUUCUCCUUCCUUGAGAUGAUGUGGAGGAUUUGCCCUGCCCUGGCUGUGGGCUGCACCGUGGUGGCCCUCGUGCCCCCGGCCUCCCCGGCGCCCCUCCUCCUGGCCCAGCUGGCGGGGGAGCUGGGCCCCUUCCCGGGAAUCCUGAAUGUCCUCAGUGGCCCUGCGUCCCUGGUGCCCAYCCUGGCCUCCCAGCCUGGAAUCCGGAAGGUGGCCUUCUGCGGAGCCCCGGAGGAAGGGCGUGCCCUUCGACGGAGCCUGGCGGGAGAGUGUGCGGAGCUGGGCCUGGCGCUGGGGACGGAGUCGCUGCUGCUGCUGACGGACACGGCGGACGUAGACUCGGCCGUGGAGGGUGUCGUGGACGCCGCCUGGUCCGACCGCGGCCCGGGUGGCCUCAGGCUCCUCAYCCAGGAGUCUGUGUGGGAUGAAGCCAUGAGACGGCUGCAGGAGCGGAUGGGGCGGCUUCGGAGUGGCCGAGGGCUGGAUGGGGCCGUGGACAUGGGGGCCCGGGGGGCUGCCGCAUGUGACCUGGUCCAGCGCUUUGUGCGUGAGGCCCAGAGCCAGGGUGCACAGGUGUUCCAGGCUGGUGAUGUGCCUUCGGAACGCCCAUUCUAUCCCCCAACCUUGGUCUCCAACCUGCCCCCAGCCUCCCCAUGUGCCCAGGUGGAGGUGCCGUGGCCUGUGGUCGUGGCCUCCCCCUUCCGCACAGCCAAGGAGGCACUGUUGGUGGCCAACGGGACGCCCCGCGGGGGCAGCGCCAGUGUGUGGAGCGAGAGGCUGGGGCAGGCGCUGGAGCUGGGCUAUGGGCUCCAGGUGGGCACUGUCUGGAUCAACGCCCACGGCCUCAGAGACCCUUCGGUGCCCACAGGCGGCUGCAAGGAGAGUGGGUGUUCCUGGCACGGGGGCCCAGACGGGCUGUAUGAGUAUCUGCGGCCCUCAGGGACCCCUGCCCGGCUGUCCUGCCUCUCCAAGAACCUGAACUAUGACACCUUUGGCCUCGCUGUYCCCUCAACCCUGCCGGCUGGGCCUGAAAUAGGGCCCAGCCCAGCACCCCCCUAUGGGCUCUUCGUUGGGGGCCGUUUCCAGGCUCCUGGGGCCCGAAGCUCCAGGCCCAUCCGGGAUUCGUCUGGCAACCUCCAUGGCUACGUGGCUGAGGGUGGAGCCAAGGACAYCCGAGGUGCUGUGGAGGCCGCUCACCAGGCUUUCCCUGGCUGGGCGGGCCAGUCCCCAGGAGCCCGGGCAGCCCUGCUGUGGGCCCUGGCGGCUGCACUGGAGCGCCGGAAGUCUACCCUGGCCUCGAGGCUGGAGAGGCAGGGAGCGGAGCUCAAGGCUGCGGAGGCGGAGGUGGAGCUGAGCGCAAGACGACUUCGGGCGUGGGGGGCCCGGGUGCAGGCCCAAGGCCACACCCUGCAGGUAGCCGGGCUGAGAGGCCCUGUGCUGCGCCUGCGGGAGCCGCUGGGUGUGCUGGCUGUGGUGUGUCCGGACGAGUGGCCCCUGCUUGCCUUCGUGUCCCUGCUGGCUCCCGCCCUGGCCUACGGCAACACUGUGGUCAUGGUGCCCAGUGCGGCCUGUCCUCUGCUGGCCCUGGAGGUCUGCCAGGACAUGGCCACCGUGUUCCCAGCAGGCCUGGCCAACGUGGUGACAGGAGACCGGGACCAUCUGACCCGCUGCCUGGCCUUGCACCAAGACGUCCAGGCCAUGUGGUAUUUCGGAUCAGCCCAGGGUUCCCAGUUUGUCGAGUGGGCCUCGGCAGGAAACCUCAAACCGGUGUGGGCGAGCAGGGGCUGCCCGCGGGCCUGGGACCAGGAGGCCGAGGGGGCAGGCCCAGAGCUGGGGCUGCGAGUGGCGCGGACCAAGGCCCUGUGGCUGCCUAUGGGGGm6ACUGAUGCCUGAGCGCCACCUACUGCAUUUUGGACACCUCACACCAAGGGGAGAUGCACCCCACAGm6ACACCU
Sequence (MODOMICS CODE ENCODING) 2000000006AGCCCCGCCCCUUUGGGCUGGAACCGGAGGUGUCGCUCUUCGGACCUCAAGGUUCCCCUUAACACAGAGCGCCCCGCAGUCUUCGCGGAAAGCGUUCGGGGUAGGCGAUGGCUGCGACGCGUGCAGGGCCCCGCGCCCGCGAGAUCUUCACCUCGCUGGAGUACGGACCGGUGCCGGAGAGCCACGCAUGCGCACUGGAGUAAUUGGCCUCA2000000009UCCUGCCACCCACAUUCUCCUUCCUUGAGAUGAUGUGGAGGAUUUGCCCUGCCCUGGCUGUGGGCUGCACCGUGGUGGCCCUCGUGCCCCCGGCCUCCCCGGCGCCCCUCCUCCUGGCCCAGCUGGCGGGGGAGCUGGGCCCCUUCCCGGGAAUCCUGAAUGUCCUCAGUGGCCCUGCGUCCCUGGUGCCCA2000000009UCCUGGCCUCCCAGCCUGGAAUCCGGAAGGUGGCCUUCUGCGGAGCCCCGGAGGAAGGGCGUGCCCUUCGACGGAGCCUGGCGGGAGAGUGUGCGGAGCUGGGCCUGGCGCUGGGGACGGAGUCGCUGCUGCUGCUGACGGACACGGCGGACGUAGACUCGGCCGUGGAGGGUGUCGUGGACGCCGCCUGGUCCGACCGCGGCCCGGGUGGCCUCAGGCUCCUCA2000000009UCCAGGAGUCUGUGUGGGAUGAAGCCAUGAGACGGCUGCAGGAGCGGAUGGGGCGGCUUCGGAGUGGCCGAGGGCUGGAUGGGGCCGUGGACAUGGGGGCCCGGGGGGCUGCCGCAUGUGACCUGGUCCAGCGCUUUGUGCGUGAGGCCCAGAGCCAGGGUGCACAGGUGUUCCAGGCUGGUGAUGUGCCUUCGGAACGCCCAUUCUAUCCCCCAACCUUGGUCUCCAACCUGCCCCCAGCCUCCCCAUGUGCCCAGGUGGAGGUGCCGUGGCCUGUGGUCGUGGCCUCCCCCUUCCGCACAGCCAAGGAGGCACUGUUGGUGGCCAACGGGACGCCCCGCGGGGGCAGCGCCAGUGUGUGGAGCGAGAGGCUGGGGCAGGCGCUGGAGCUGGGCUAUGGGCUCCAGGUGGGCACUGUCUGGAUCAACGCCCACGGCCUCAGAGACCCUUCGGUGCCCACAGGCGGCUGCAAGGAGAGUGGGUGUUCCUGGCACGGGGGCCCAGACGGGCUGUAUGAGUAUCUGCGGCCCUCAGGGACCCCUGCCCGGCUGUCCUGCCUCUCCAAGAACCUGAACUAUGACACCUUUGGCCUCGCUGU2000000009UCCCUCAACCCUGCCGGCUGGGCCUGAAAUAGGGCCCAGCCCAGCACCCCCCUAUGGGCUCUUCGUUGGGGGCCGUUUCCAGGCUCCUGGGGCCCGAAGCUCCAGGCCCAUCCGGGAUUCGUCUGGCAACCUCCAUGGCUACGUGGCUGAGGGUGGAGCCAAGGACA2000000009UCCGAGGUGCUGUGGAGGCCGCUCACCAGGCUUUCCCUGGCUGGGCGGGCCAGUCCCCAGGAGCCCGGGCAGCCCUGCUGUGGGCCCUGGCGGCUGCACUGGAGCGCCGGAAGUCUACCCUGGCCUCGAGGCUGGAGAGGCAGGGAGCGGAGCUCAAGGCUGCGGAGGCGGAGGUGGAGCUGAGCGCAAGACGACUUCGGGCGUGGGGGGCCCGGGUGCAGGCCCAAGGCCACACCCUGCAGGUAGCCGGGCUGAGAGGCCCUGUGCUGCGCCUGCGGGAGCCGCUGGGUGUGCUGGCUGUGGUGUGUCCGGACGAGUGGCCCCUGCUUGCCUUCGUGUCCCUGCUGGCUCCCGCCCUGGCCUACGGCAACACUGUGGUCAUGGUGCCCAGUGCGGCCUGUCCUCUGCUGGCCCUGGAGGUCUGCCAGGACAUGGCCACCGUGUUCCCAGCAGGCCUGGCCAACGUGGUGACAGGAGACCGGGACCAUCUGACCCGCUGCCUGGCCUUGCACCAAGACGUCCAGGCCAUGUGGUAUUUCGGAUCAGCCCAGGGUUCCCAGUUUGUCGAGUGGGCCUCGGCAGGAAACCUCAAACCGGUGUGGGCGAGCAGGGGCUGCCCGCGGGCCUGGGACCAGGAGGCCGAGGGGGCAGGCCCAGAGCUGGGGCUGCGAGUGGCGCGGACCAAGGCCCUGUGGCUGCCUAUGGGGG2000000006ACUGAUGCCUGAGCGCCACCUACUGCAUUUUGGACACCUCACACCAAGGGGAGAUGCACCCCACAG2000000006ACACCU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1 213 405 630 1228 1395 2103 2169
Modification Positions m6A Y Y Y Y Y m6A m6A
Genomic Coordinates 19:49453225:+ 19:49460837:+ 19:49461748:+ 19:49462589:+ 19:49464724:+ 19:49465866:+ 19:49470463:+ 19:49470529:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
KRfQJWH4K5KH
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
8cMbzB4aD5Se
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8