General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000700631
Gene ID:	ENSG00000105223
Gene Name:	PLD3
Sequence (UNICHARACTER ENCODING)	AGCCCGGACUGGGGCACGCACUGCGCAGACUCCCCGCUGCAGUGGGCGGAGCUCCCACAGGCCCCGCCCCCUCCUCCCACCCUCGUUCAGCCUGUCCAGACAGAAGCUGGGGCCCACCGGAGGUAGCUGCAGACGCCUGAGAGCGAGGCCGAGGCCCCUCAGGGUUUGGAGACCCUGACACACCCACCUUCUCACCUGGGCUCUGCGUAUCCCCCAGCCUUGAGGGAAGAUGAAGCCUAAACUGAUGUACCAGGAGCUGAAGGUGCCUGCAGAGGAGCCCGCCAAUGAGCUGCCCAUGAAUGAGAUUGAGGCGUGGAAGGCUGCGGAAAAGAAAGCCCGCUGGGUCCUGCUGGUCCUCAUUCUGGCGGUUGUGGGCUUCGGAGCCCUGAUGACUCAGCUGUUUCUAUGGGAAUACGGCGACUUGCAUCUCUUUGGGCCCAACCAGCGCCCAGCCCCCUGCUAUGACCCUUGCGAAGCAGUGCUGGUGGAAAGCAUUCCUGAGGGCCUGGACUUCCCCAAUGC?UCCACGGGGAACCCUUCCACCAGCCAGGCCUGGCUGGGCCUGCUCGCCGGUGCGCACAGCAGCCUGGACAUCGCCUCCUUCUACUGGACCCUCACCAACAAUGACACCCACACGCAGGAGCCCUCUGCCCAGCAGGGUGAGGAGGUCCPCCGGCAGCUGCAGACCCUGGCACCAAAGGGCGUGAACGUCCGCAUCGCUGUGAGCAAGCCCAGCGGGCCCCAGCCACAGGCGGACCUGCAGGCUCUGCUGCAGAGCGGUGCCCAGGUCCGCAUGGUGGACAUGCAGAAGCUGACCCAUGGCGUCCUGCAUACCAAGUUCUGGGUGGUGGACCAGACCCACUUCUACCUGGGCAGUGCCAACAUGGACUGGCGUUCACUGACCCAGGUCAAGGAGCUGGGCGUGGUCAUGUACAACUGCAGCUGCCUGGCUCGAGЖCCUGACCAAGAUCUUUGAGGCCUACUGGUUCCUGGGCCAGGCAGGCAGCUCCAPCCCAUCAACUUGGCCCCGGUUCUAUGACACCCGCUACЖACCAAGAGACACCAAUGGAGAUCUGCCUCAAUGGAACCCCUGCUCUGGCCUACCUGGCGAGUGCGCCCCCACCCCUGUGUCCAAGUGGCCGCACUCCAGACCUGAAGGCUCUACUCAACGUGGUGGACAAUGCCCGGAGUUUCAUCUACGUCGCUGUCAUGAACUACCUGCCCACUCUGGAGUUCUCCCACCCUCACAGGUUCUGGCCUGCCAUUGACGAUGGGCUGCGGCGGGCCACCUACGAGCGUGGCGUCAAGGUGCGCCUGCUCAUCAGCUGCUGGGGACACUCGGAGCCAPCCAUGCGGGCCUUCCUGCUCUCUCUGGCUGCCCUGCGUGACAACCAUACCCACUCUGACAPCCAGGUGAAACUCUUUGUGGUCCCCGCGGAUGAGGCCCAGGCUCGAAUCCCAUAUGCCCGUGUCAACCACAACAAGUACAUGGUGACUGAACGCGCCACCUACAUCGGAACCUCCAACUGGUCUGGCAACUACUUCACGGAGACGGCGGGCACCUCGCUGCPGGUGACGCAGAAUGGGAGGGGCGGCCUGCGGAGCCAGCUGGAGGCCAUUUUCCUGAGGGACUGGGACUCCCCUUACAGCCAUGACCUUGACACCUCAGCUGACAGCGUGGGCAACGCCUGCCGCCUGCUCUGAGGCCCGAUCCAGUGGGCAGGCCAAGGCCUGCUGGGCCCCCGCGGACCCAGUGAUGUGAUGACAGCUCACUGCAGCCUCGACCUCCCUGGCUCAAGUGAUCCUCCCACCUCAGCCUCCUGAGUAGCUGGGACUACAGGUGCAUGCCACCAAAACCAGCUAAUAUUUCUAAUUUUUUGGUGCAGACGGGAUCUCACUAUGUUGCCCAGGCUCUUUAUC
Sequence (SHORT NAMES ENCODING)	AGCCCGGACUGGGGCACGCACUGCGCAGACUCCCCGCUGCAGUGGGCGGAGCUCCCACAGGCCCCGCCCCCUCCUCCCACCCUCGUUCAGCCUGUCCAGACAGAAGCUGGGGCCCACCGGAGGUAGCUGCAGACGCCUGAGAGCGAGGCCGAGGCCCCUCAGGGUUUGGAGACCCUGACACACCCACCUUCUCACCUGGGCUCUGCGUAUCCCCCAGCCUUGAGGGAAGAUGAAGCCUAAACUGAUGUACCAGGAGCUGAAGGUGCCUGCAGAGGAGCCCGCCAAUGAGCUGCCCAUGAAUGAGAUUGAGGCGUGGAAGGCUGCGGAAAAGAAAGCCCGCUGGGUCCUGCUGGUCCUCAUUCUGGCGGUUGUGGGCUUCGGAGCCCUGAUGACUCAGCUGUUUCUAUGGGAAUACGGCGACUUGCAUCUCUUUGGGCCCAACCAGCGCCCAGCCCCCUGCUAUGACCCUUGCGAAGCAGUGCUGGUGGAAAGCAUUCCUGAGGGCCUGGACUUCCCCAAUGCm5CUCCACGGGGAACCCUUCCACCAGCCAGGCCUGGCUGGGCCUGCUCGCCGGUGCGCACAGCAGCCUGGACAUCGCCUCCUUCUACUGGACCCUCACCAACAAUGACACCCACACGCAGGAGCCCUCUGCCCAGCAGGGUGAGGAGGUCCYCCGGCAGCUGCAGACCCUGGCACCAAAGGGCGUGAACGUCCGCAUCGCUGUGAGCAAGCCCAGCGGGCCCCAGCCACAGGCGGACCUGCAGGCUCUGCUGCAGAGCGGUGCCCAGGUCCGCAUGGUGGACAUGCAGAAGCUGACCCAUGGCGUCCUGCAUACCAAGUUCUGGGUGGUGGACCAGACCCACUUCUACCUGGGCAGUGCCAACAUGGACUGGCGUUCACUGACCCAGGUCAAGGAGCUGGGCGUGGUCAUGUACAACUGCAGCUGCCUGGCUCGAGm6ACCUGACCAAGAUCUUUGAGGCCUACUGGUUCCUGGGCCAGGCAGGCAGCUCCAYCCCAUCAACUUGGCCCCGGUUCUAUGACACCCGCUACm6AACCAAGAGACACCAAUGGAGAUCUGCCUCAAUGGAACCCCUGCUCUGGCCUACCUGGCGAGUGCGCCCCCACCCCUGUGUCCAAGUGGCCGCACUCCAGACCUGAAGGCUCUACUCAACGUGGUGGACAAUGCCCGGAGUUUCAUCUACGUCGCUGUCAUGAACUACCUGCCCACUCUGGAGUUCUCCCACCCUCACAGGUUCUGGCCUGCCAUUGACGAUGGGCUGCGGCGGGCCACCUACGAGCGUGGCGUCAAGGUGCGCCUGCUCAUCAGCUGCUGGGGACACUCGGAGCCAYCCAUGCGGGCCUUCCUGCUCUCUCUGGCUGCCCUGCGUGACAACCAUACCCACUCUGACAYCCAGGUGAAACUCUUUGUGGUCCCCGCGGAUGAGGCCCAGGCUCGAAUCCCAUAUGCCCGUGUCAACCACAACAAGUACAUGGUGACUGAACGCGCCACCUACAUCGGAACCUCCAACUGGUCUGGCAACUACUUCACGGAGACGGCGGGCACCUCGCUGCYGGUGACGCAGAAUGGGAGGGGCGGCCUGCGGAGCCAGCUGGAGGCCAUUUUCCUGAGGGACUGGGACUCCCCUUACAGCCAUGACCUUGACACCUCAGCUGACAGCGUGGGCAACGCCUGCCGCCUGCUCUGAGGCCCGAUCCAGUGGGCAGGCCAAGGCCUGCUGGGCCCCCGCGGACCCAGUGAUGUGAUGACAGCUCACUGCAGCCUCGACCUCCCUGGCUCAAGUGAUCCUCCCACCUCAGCCUCCUGAGUAGCUGGGACUACAGGUGCAUGCCACCAAAACCAGCUAAUAUUUCUAAUUUUUUGGUGCAGACGGGAUCUCACUAUGUUGCCCAGGCUCUUUAUC
Sequence (MODOMICS CODE ENCODING)	AGCCCGGACUGGGGCACGCACUGCGCAGACUCCCCGCUGCAGUGGGCGGAGCUCCCACAGGCCCCGCCCCCUCCUCCCACCCUCGUUCAGCCUGUCCAGACAGAAGCUGGGGCCCACCGGAGGUAGCUGCAGACGCCUGAGAGCGAGGCCGAGGCCCCUCAGGGUUUGGAGACCCUGACACACCCACCUUCUCACCUGGGCUCUGCGUAUCCCCCAGCCUUGAGGGAAGAUGAAGCCUAAACUGAUGUACCAGGAGCUGAAGGUGCCUGCAGAGGAGCCCGCCAAUGAGCUGCCCAUGAAUGAGAUUGAGGCGUGGAAGGCUGCGGAAAAGAAAGCCCGCUGGGUCCUGCUGGUCCUCAUUCUGGCGGUUGUGGGCUUCGGAGCCCUGAUGACUCAGCUGUUUCUAUGGGAAUACGGCGACUUGCAUCUCUUUGGGCCCAACCAGCGCCCAGCCCCCUGCUAUGACCCUUGCGAAGCAGUGCUGGUGGAAAGCAUUCCUGAGGGCCUGGACUUCCCCAAUGC2000000005CUCCACGGGGAACCCUUCCACCAGCCAGGCCUGGCUGGGCCUGCUCGCCGGUGCGCACAGCAGCCUGGACAUCGCCUCCUUCUACUGGACCCUCACCAACAAUGACACCCACACGCAGGAGCCCUCUGCCCAGCAGGGUGAGGAGGUCC2000000009UCCGGCAGCUGCAGACCCUGGCACCAAAGGGCGUGAACGUCCGCAUCGCUGUGAGCAAGCCCAGCGGGCCCCAGCCACAGGCGGACCUGCAGGCUCUGCUGCAGAGCGGUGCCCAGGUCCGCAUGGUGGACAUGCAGAAGCUGACCCAUGGCGUCCUGCAUACCAAGUUCUGGGUGGUGGACCAGACCCACUUCUACCUGGGCAGUGCCAACAUGGACUGGCGUUCACUGACCCAGGUCAAGGAGCUGGGCGUGGUCAUGUACAACUGCAGCUGCCUGGCUCGAG2000000006ACCUGACCAAGAUCUUUGAGGCCUACUGGUUCCUGGGCCAGGCAGGCAGCUCCA2000000009UCCCAUCAACUUGGCCCCGGUUCUAUGACACCCGCUAC2000000006AACCAAGAGACACCAAUGGAGAUCUGCCUCAAUGGAACCCCUGCUCUGGCCUACCUGGCGAGUGCGCCCCCACCCCUGUGUCCAAGUGGCCGCACUCCAGACCUGAAGGCUCUACUCAACGUGGUGGACAAUGCCCGGAGUUUCAUCUACGUCGCUGUCAUGAACUACCUGCCCACUCUGGAGUUCUCCCACCCUCACAGGUUCUGGCCUGCCAUUGACGAUGGGCUGCGGCGGGCCACCUACGAGCGUGGCGUCAAGGUGCGCCUGCUCAUCAGCUGCUGGGGACACUCGGAGCCA2000000009UCCAUGCGGGCCUUCCUGCUCUCUCUGGCUGCCCUGCGUGACAACCAUACCCACUCUGACA2000000009UCCAGGUGAAACUCUUUGUGGUCCCCGCGGAUGAGGCCCAGGCUCGAAUCCCAUAUGCCCGUGUCAACCACAACAAGUACAUGGUGACUGAACGCGCCACCUACAUCGGAACCUCCAACUGGUCUGGCAACUACUUCACGGAGACGGCGGGCACCUCGCUGC2000000009UGGUGACGCAGAAUGGGAGGGGCGGCCUGCGGAGCCAGCUGGAGGCCAUUUUCCUGAGGGACUGGGACUCCCCUUACAGCCAUGACCUUGACACCUCAGCUGACAGCGUGGGCAACGCCUGCCGCCUGCUCUGAGGCCCGAUCCAGUGGGCAGGCCAAGGCCUGCUGGGCCCCCGCGGACCCAGUGAUGUGAUGACAGCUCACUGCAGCCUCGACCUCCCUGGCUCAAGUGAUCCUCCCACCUCAGCCUCCUGAGUAGCUGGGACUACAGGUGCAUGCCACCAAAACCAGCUAAUAUUUCUAAUUUUUUGGUGCAGACGGGAUCUCACUAUGUUGCCCAGGCUCUUUAUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	523	672	957	1011	1049	1346	1407	1569
Modification Positions	m5C	Y	m6A	Y	m6A	Y	Y	Y
Genomic Coordinates	19:40367744:+	19:40369921:+	19:40371722:+	19:40371776:+	19:40371814:+	19:40376706:+	19:40376767:+	19:40378040:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bfJ5wdhcAaBm DSMzjY4xbXU4 eLavpH6X9gVW kANKQCQxcUF3 4Hod8ruppnD2 5tjPWDS39J3i 9De2LACts9mj BnpqjwVeTStU bvmqLAbo2zqf mNhhJTdKpjtR	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	fhx8RaDLaBC3 hcdxNYyukcBe 5EVooy9BzECE c3ahQNCFGdsx LLvJQkDcDhob