Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000233596
Gene ID: ENSG00000115255
Gene Name: REEP6
Sequence (UNICHARACTER ENCODING) AGGCUGCGGGAAAGCGGUGCGCGUGCAGCGGGGUGGGUGCCCUGGUCCGCGGGCGAGCUCGAGCAGCCAACCCCGGGCGCGUCGGGGCCAUGGACGGCCUGAGGCAGCGCGUGGAGCACUUCCUGGAGCAAAGGAACCUGGUCACCGAAGUGCUGGGGGCGCUGGAGGCCAAGACCGGGGUGGAGAAGCGGUAUCUGGCUGCAGGAGCCGUCACUCUGCUAAGCCUGUAUCUGCUGUUCGGCUACGGAGCGUCUCUGCUGUGCAAUCUCAUCGGAUUUGUGUACCCCGCAUAUGCCUCAAUCAAAGCUAUCGAGAGCCCAAGCAAGGACGACGACACUGUGUGGCUCACCUACUGGGUGGUGUACGCCCUGUUUGGGCUGGCCGAGUUCUUCAGCGAUCUACUCCUGUCCUGGUUCCCUUUCUACUACGUGGGCAAGUGCGCCUUCCUGUUGUUCUGCAUGGCUCCCAGGCCCUGGAACGGGGCUCUCAUGCUGUAUCAGCGCGUCGUGCGUCCGCUGUUCCUAAGGCACCACGGGGCCGUAGACAGAAUCAUGAACGACCUCAGCGGGCGAGCCCUGGACGCGGCGGCCGGAAUAACCAGGAACGUCAAGCCAAGCCAGACCCCGCAGCCGAAGGACAAGUGAAGCAGCCCCCUGAGCCUCACAAGGACCUCCUGGCUGGUGAGGAGGGGGCCGCGCCAGGCUCCCAGGC?UCCACAGAGUCUUCAGCGCAUCCCCCAACAGCAGCCCCUGCCAGUCCCUCGGGUCCAGGCAAGGCCCUGGGGGUCUCCUUAAAUGCCACCUCGGGCAAGUCCCAGUCCCAGUCCUCGGCCACCCCCAGCUCUGGAUCCCAGGGCCAGCUGCCCUCUGGCUCUGGCUGUGGCUCCCGCCUGUCCGGCAGGGCCCAGGGCCAGCGUCGGGCACAGGGCAGCUCCCACUGGUCUCGGCAACACACCCAGCCGCCUGGUACUUCCUCCAGCCCCUCCCAGUCAGCCCUCCCGUCCUCGGGGCCCCUGCAGCCACCCAACGUCACCUCCAGCCCGGUCUCACCCAUGGUCCAGUCUCCCAGCAGCAGCAACAPCCCCACGCAGCCCCCCAGCAAGUCCUCUGGCAAGCCGGAGGACGCAGCCCCCAAGACCAGCGGACAGCGCCAGAAGGAAUCGUCGAAACAGCCUGCCAGCAGCGCCUCAGUGCCCGAGCUGGUCCCCUGCCAUUCCGGGACCUCUCUGGAGUACACUUCGGAGUCCACCACCGAGAUCACCUGCAGCUGGCCACACCACAGGCCCCCGUGCCUGCAGCACUACUGGUGCCUGAAACACCUGGCCUGCUAGGAGGCUCCAAUAAAGCUAACCCGGACCAGA
Sequence (SHORT NAMES ENCODING) AGGCUGCGGGAAAGCGGUGCGCGUGCAGCGGGGUGGGUGCCCUGGUCCGCGGGCGAGCUCGAGCAGCCAACCCCGGGCGCGUCGGGGCCAUGGACGGCCUGAGGCAGCGCGUGGAGCACUUCCUGGAGCAAAGGAACCUGGUCACCGAAGUGCUGGGGGCGCUGGAGGCCAAGACCGGGGUGGAGAAGCGGUAUCUGGCUGCAGGAGCCGUCACUCUGCUAAGCCUGUAUCUGCUGUUCGGCUACGGAGCGUCUCUGCUGUGCAAUCUCAUCGGAUUUGUGUACCCCGCAUAUGCCUCAAUCAAAGCUAUCGAGAGCCCAAGCAAGGACGACGACACUGUGUGGCUCACCUACUGGGUGGUGUACGCCCUGUUUGGGCUGGCCGAGUUCUUCAGCGAUCUACUCCUGUCCUGGUUCCCUUUCUACUACGUGGGCAAGUGCGCCUUCCUGUUGUUCUGCAUGGCUCCCAGGCCCUGGAACGGGGCUCUCAUGCUGUAUCAGCGCGUCGUGCGUCCGCUGUUCCUAAGGCACCACGGGGCCGUAGACAGAAUCAUGAACGACCUCAGCGGGCGAGCCCUGGACGCGGCGGCCGGAAUAACCAGGAACGUCAAGCCAAGCCAGACCCCGCAGCCGAAGGACAAGUGAAGCAGCCCCCUGAGCCUCACAAGGACCUCCUGGCUGGUGAGGAGGGGGCCGCGCCAGGCUCCCAGGCm5CUCCACAGAGUCUUCAGCGCAUCCCCCAACAGCAGCCCCUGCCAGUCCCUCGGGUCCAGGCAAGGCCCUGGGGGUCUCCUUAAAUGCCACCUCGGGCAAGUCCCAGUCCCAGUCCUCGGCCACCCCCAGCUCUGGAUCCCAGGGCCAGCUGCCCUCUGGCUCUGGCUGUGGCUCCCGCCUGUCCGGCAGGGCCCAGGGCCAGCGUCGGGCACAGGGCAGCUCCCACUGGUCUCGGCAACACACCCAGCCGCCUGGUACUUCCUCCAGCCCCUCCCAGUCAGCCCUCCCGUCCUCGGGGCCCCUGCAGCCACCCAACGUCACCUCCAGCCCGGUCUCACCCAUGGUCCAGUCUCCCAGCAGCAGCAACAYCCCCACGCAGCCCCCCAGCAAGUCCUCUGGCAAGCCGGAGGACGCAGCCCCCAAGACCAGCGGACAGCGCCAGAAGGAAUCGUCGAAACAGCCUGCCAGCAGCGCCUCAGUGCCCGAGCUGGUCCCCUGCCAUUCCGGGACCUCUCUGGAGUACACUUCGGAGUCCACCACCGAGAUCACCUGCAGCUGGCCACACCACAGGCCCCCGUGCCUGCAGCACUACUGGUGCCUGAAACACCUGGCCUGCUAGGAGGCUCCAAUAAAGCUAACCCGGACCAGA
Sequence (MODOMICS CODE ENCODING) AGGCUGCGGGAAAGCGGUGCGCGUGCAGCGGGGUGGGUGCCCUGGUCCGCGGGCGAGCUCGAGCAGCCAACCCCGGGCGCGUCGGGGCCAUGGACGGCCUGAGGCAGCGCGUGGAGCACUUCCUGGAGCAAAGGAACCUGGUCACCGAAGUGCUGGGGGCGCUGGAGGCCAAGACCGGGGUGGAGAAGCGGUAUCUGGCUGCAGGAGCCGUCACUCUGCUAAGCCUGUAUCUGCUGUUCGGCUACGGAGCGUCUCUGCUGUGCAAUCUCAUCGGAUUUGUGUACCCCGCAUAUGCCUCAAUCAAAGCUAUCGAGAGCCCAAGCAAGGACGACGACACUGUGUGGCUCACCUACUGGGUGGUGUACGCCCUGUUUGGGCUGGCCGAGUUCUUCAGCGAUCUACUCCUGUCCUGGUUCCCUUUCUACUACGUGGGCAAGUGCGCCUUCCUGUUGUUCUGCAUGGCUCCCAGGCCCUGGAACGGGGCUCUCAUGCUGUAUCAGCGCGUCGUGCGUCCGCUGUUCCUAAGGCACCACGGGGCCGUAGACAGAAUCAUGAACGACCUCAGCGGGCGAGCCCUGGACGCGGCGGCCGGAAUAACCAGGAACGUCAAGCCAAGCCAGACCCCGCAGCCGAAGGACAAGUGAAGCAGCCCCCUGAGCCUCACAAGGACCUCCUGGCUGGUGAGGAGGGGGCCGCGCCAGGCUCCCAGGC2000000005CUCCACAGAGUCUUCAGCGCAUCCCCCAACAGCAGCCCCUGCCAGUCCCUCGGGUCCAGGCAAGGCCCUGGGGGUCUCCUUAAAUGCCACCUCGGGCAAGUCCCAGUCCCAGUCCUCGGCCACCCCCAGCUCUGGAUCCCAGGGCCAGCUGCCCUCUGGCUCUGGCUGUGGCUCCCGCCUGUCCGGCAGGGCCCAGGGCCAGCGUCGGGCACAGGGCAGCUCCCACUGGUCUCGGCAACACACCCAGCCGCCUGGUACUUCCUCCAGCCCCUCCCAGUCAGCCCUCCCGUCCUCGGGGCCCCUGCAGCCACCCAACGUCACCUCCAGCCCGGUCUCACCCAUGGUCCAGUCUCCCAGCAGCAGCAACA2000000009UCCCCACGCAGCCCCCCAGCAAGUCCUCUGGCAAGCCGGAGGACGCAGCCCCCAAGACCAGCGGACAGCGCCAGAAGGAAUCGUCGAAACAGCCUGCCAGCAGCGCCUCAGUGCCCGAGCUGGUCCCCUGCCAUUCCGGGACCUCUCUGGAGUACACUUCGGAGUCCACCACCGAGAUCACCUGCAGCUGGCCACACCACAGGCCCCCGUGCCUGCAGCACUACUGGUGCCUGAAACACCUGGCCUGCUAGGAGGCUCCAAUAAAGCUAACCCGGACCAGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 712 1080
Modification Positions m5C Y
Genomic Coordinates 19:1497279:+ 19:1497647:+
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs DSMzjY4xbXU4
eLavpH6X9gVW
4Hod8ruppnD2
9De2LACts9mj
BnpqjwVeTStU
bvmqLAbo2zqf
mNhhJTdKpjtR
BtsJQJ3DteUq
dknfVe6BK8aP
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8