General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000245817
Gene ID:	ENSG00000125657
Gene Name:	TNFSF9
Sequence (UNICHARACTER ENCODING)	ЖGUCUCUCGUCAUGGAAUACGCCUCUGACGCUUCACUGGACCCCGAAGCCCCGUGGCCUCCCGCGCCCCGCGCUCGCGCCUGCCGCGUACUGCCUUGGGCCCUGGUCGCGGGGCUGCUGCUGCUGCUGCUGCUCGCUGCCGCCUGCGCCGUCUUCCUCGCCUGCCCCUGGGCCGUGUCCGGGGCUCGCGCCUCGCCCGGCUCCGCGGCCAGCCCGAGACUCCGCGAGGGUCCCGAGCUUUCGCCCGACGAUCCCGCCGGCCUCUUGGACCUGCGGCAGGGCAUGUUUGCGCAGCUGGUGGCCCAAAAUGUUCUGCUGAUCGAUGGGCCCCUGAGCUGGUACAGUGACCCAGGCCUGGCAGGCGUGUCCCUGACGGGGGGCCUGAGCUACAAAGAGGACACGAAGGAGCUGGUGGUGGCCAAGGCUGGAGUCUACUAUGUCUUCUUUCAACUAGAGCUGCGGCGCGUGGUGGCCGGCGAGGGCUCAGGCUCCGUUUCACUUGCGCUGCACCUGCAGCCACUGCGCUCUGCUGCUGGGGCCGCCGCCCUGGCUUUGACCGUGGЖCCUGCCACCCGCCUCCUCCGAGGCUCGGAЖCUCGGCCUUCGGUUUCCAGGGCCGCUUGCUGCACCUGAGUGCCGGCCAGCGCCUGGGCGUCCAUCUUCACACUGAGGCCAGGGCACGCCAUGCCUGGCAGCUUACCCAGGGCGCCACAGUCUUGGGЖCUCUUCCGGGUGACCCCCGAAAUCCCAGCCGGЖCUCCCUUCACCGAGGUCGGAAUAACGUCCAGCCUGGGUGCAGCCCACCUGGACAGAGUCCGAAUCCUACUCCAPCCUUCAUGGAGACCCCUGGUGCUGGGUCCCUGCUGCUUUCUCUACCUCAAGGGGCUUGGCAGGGGUCCCUGCUGCUGACCUCCCCUUGAGGACCCUCCUCACCCACUCCUUCCCCAAGUUGGЖCCUUGAUAUUUAUUCUGAGCCUGAGCUCAGAUAAUAUAUUAUAUAUAUUAUAUAUAUAUAUAUAUUUCUAUUUAAAGAGGAUCCUGAGUUUGUGAAUGGЖCUUUUUUAGAGGAGUUGUUUUGGGGGGGGGGGGGUCUUCGACAUUGCCGAGGCUGGUCUUGAЖCUCCUGGЖCUUAGACGAUCCUCCUGCCUCAGCCUCCCAAGCAACUGGGAUUCAPCCUUUCUAUUAAUUCAUUGUACUUAUUUGCUUAUUUGUGUGUAUUGAGCAUCUGUAAUGUGCCAGCAUUGUGCCCAGGCUAGGGGGCUAUAGAAACAUCUAGAAAUAGЖCUGAAAGAAAAUCUGAGUUAUGGUAAUACGUGAGGAAUUUAAAGЖCUCAUCCCCAGCCUCCACCUCCUGUGUGAUACUUGGGGGCUAGCUUUUUUCUUUCUUUCUUUUUUUUGAGAUGGUCUUGUUCUGUCAACCAGGCUAGAAUGCAGCGGUGCAAUCAUGAGUCAAUGCAGCCUCCAGCCUCGACCUCCCGAGGCUCAGGUGAUCCUCCCAUCUCAGCCUCUCGAGUAGCUGGGACCACAGUUGUGUGCCACCACACUUGGCUAЖCUUUUUAAUUUUUUUGCGGAGACGGUAUUGCUAUGUUGCCAAGGUUGUUUACAUGCCAGUACAAUUUAUAAUAAACACUCAUUUUUCCUCCC
Sequence (SHORT NAMES ENCODING)	m6AGUCUCUCGUCAUGGAAUACGCCUCUGACGCUUCACUGGACCCCGAAGCCCCGUGGCCUCCCGCGCCCCGCGCUCGCGCCUGCCGCGUACUGCCUUGGGCCCUGGUCGCGGGGCUGCUGCUGCUGCUGCUGCUCGCUGCCGCCUGCGCCGUCUUCCUCGCCUGCCCCUGGGCCGUGUCCGGGGCUCGCGCCUCGCCCGGCUCCGCGGCCAGCCCGAGACUCCGCGAGGGUCCCGAGCUUUCGCCCGACGAUCCCGCCGGCCUCUUGGACCUGCGGCAGGGCAUGUUUGCGCAGCUGGUGGCCCAAAAUGUUCUGCUGAUCGAUGGGCCCCUGAGCUGGUACAGUGACCCAGGCCUGGCAGGCGUGUCCCUGACGGGGGGCCUGAGCUACAAAGAGGACACGAAGGAGCUGGUGGUGGCCAAGGCUGGAGUCUACUAUGUCUUCUUUCAACUAGAGCUGCGGCGCGUGGUGGCCGGCGAGGGCUCAGGCUCCGUUUCACUUGCGCUGCACCUGCAGCCACUGCGCUCUGCUGCUGGGGCCGCCGCCCUGGCUUUGACCGUGGm6ACCUGCCACCCGCCUCCUCCGAGGCUCGGAm6ACUCGGCCUUCGGUUUCCAGGGCCGCUUGCUGCACCUGAGUGCCGGCCAGCGCCUGGGCGUCCAUCUUCACACUGAGGCCAGGGCACGCCAUGCCUGGCAGCUUACCCAGGGCGCCACAGUCUUGGGm6ACUCUUCCGGGUGACCCCCGAAAUCCCAGCCGGm6ACUCCCUUCACCGAGGUCGGAAUAACGUCCAGCCUGGGUGCAGCCCACCUGGACAGAGUCCGAAUCCUACUCCAYCCUUCAUGGAGACCCCUGGUGCUGGGUCCCUGCUGCUUUCUCUACCUCAAGGGGCUUGGCAGGGGUCCCUGCUGCUGACCUCCCCUUGAGGACCCUCCUCACCCACUCCUUCCCCAAGUUGGm6ACCUUGAUAUUUAUUCUGAGCCUGAGCUCAGAUAAUAUAUUAUAUAUAUUAUAUAUAUAUAUAUAUUUCUAUUUAAAGAGGAUCCUGAGUUUGUGAAUGGm6ACUUUUUUAGAGGAGUUGUUUUGGGGGGGGGGGGGUCUUCGACAUUGCCGAGGCUGGUCUUGAm6ACUCCUGGm6ACUUAGACGAUCCUCCUGCCUCAGCCUCCCAAGCAACUGGGAUUCAYCCUUUCUAUUAAUUCAUUGUACUUAUUUGCUUAUUUGUGUGUAUUGAGCAUCUGUAAUGUGCCAGCAUUGUGCCCAGGCUAGGGGGCUAUAGAAACAUCUAGAAAUAGm6ACUGAAAGAAAAUCUGAGUUAUGGUAAUACGUGAGGAAUUUAAAGm6ACUCAUCCCCAGCCUCCACCUCCUGUGUGAUACUUGGGGGCUAGCUUUUUUCUUUCUUUCUUUUUUUUGAGAUGGUCUUGUUCUGUCAACCAGGCUAGAAUGCAGCGGUGCAAUCAUGAGUCAAUGCAGCCUCCAGCCUCGACCUCCCGAGGCUCAGGUGAUCCUCCCAUCUCAGCCUCUCGAGUAGCUGGGACCACAGUUGUGUGCCACCACACUUGGCUAm6ACUUUUUAAUUUUUUUGCGGAGACGGUAUUGCUAUGUUGCCAAGGUUGUUUACAUGCCAGUACAAUUUAUAAUAAACACUCAUUUUUCCUCCC
Sequence (MODOMICS CODE ENCODING)	2000000006AGUCUCUCGUCAUGGAAUACGCCUCUGACGCUUCACUGGACCCCGAAGCCCCGUGGCCUCCCGCGCCCCGCGCUCGCGCCUGCCGCGUACUGCCUUGGGCCCUGGUCGCGGGGCUGCUGCUGCUGCUGCUGCUCGCUGCCGCCUGCGCCGUCUUCCUCGCCUGCCCCUGGGCCGUGUCCGGGGCUCGCGCCUCGCCCGGCUCCGCGGCCAGCCCGAGACUCCGCGAGGGUCCCGAGCUUUCGCCCGACGAUCCCGCCGGCCUCUUGGACCUGCGGCAGGGCAUGUUUGCGCAGCUGGUGGCCCAAAAUGUUCUGCUGAUCGAUGGGCCCCUGAGCUGGUACAGUGACCCAGGCCUGGCAGGCGUGUCCCUGACGGGGGGCCUGAGCUACAAAGAGGACACGAAGGAGCUGGUGGUGGCCAAGGCUGGAGUCUACUAUGUCUUCUUUCAACUAGAGCUGCGGCGCGUGGUGGCCGGCGAGGGCUCAGGCUCCGUUUCACUUGCGCUGCACCUGCAGCCACUGCGCUCUGCUGCUGGGGCCGCCGCCCUGGCUUUGACCGUGG2000000006ACCUGCCACCCGCCUCCUCCGAGGCUCGGA2000000006ACUCGGCCUUCGGUUUCCAGGGCCGCUUGCUGCACCUGAGUGCCGGCCAGCGCCUGGGCGUCCAUCUUCACACUGAGGCCAGGGCACGCCAUGCCUGGCAGCUUACCCAGGGCGCCACAGUCUUGGG2000000006ACUCUUCCGGGUGACCCCCGAAAUCCCAGCCGG2000000006ACUCCCUUCACCGAGGUCGGAAUAACGUCCAGCCUGGGUGCAGCCCACCUGGACAGAGUCCGAAUCCUACUCCA2000000009UCCUUCAUGGAGACCCCUGGUGCUGGGUCCCUGCUGCUUUCUCUACCUCAAGGGGCUUGGCAGGGGUCCCUGCUGCUGACCUCCCCUUGAGGACCCUCCUCACCCACUCCUUCCCCAAGUUGG2000000006ACCUUGAUAUUUAUUCUGAGCCUGAGCUCAGAUAAUAUAUUAUAUAUAUUAUAUAUAUAUAUAUAUUUCUAUUUAAAGAGGAUCCUGAGUUUGUGAAUGG2000000006ACUUUUUUAGAGGAGUUGUUUUGGGGGGGGGGGGGUCUUCGACAUUGCCGAGGCUGGUCUUGA2000000006ACUCCUGG2000000006ACUUAGACGAUCCUCCUGCCUCAGCCUCCCAAGCAACUGGGAUUCA2000000009UCCUUUCUAUUAAUUCAUUGUACUUAUUUGCUUAUUUGUGUGUAUUGAGCAUCUGUAAUGUGCCAGCAUUGUGCCCAGGCUAGGGGGCUAUAGAAACAUCUAGAAAUAG2000000006ACUGAAAGAAAAUCUGAGUUAUGGUAAUACGUGAGGAAUUUAAAG2000000006ACUCAUCCCCAGCCUCCACCUCCUGUGUGAUACUUGGGGGCUAGCUUUUUUCUUUCUUUCUUUUUUUUGAGAUGGUCUUGUUCUGUCAACCAGGCUAGAAUGCAGCGGUGCAAUCAUGAGUCAAUGCAGCCUCCAGCCUCGACCUCCCGAGGCUCAGGUGAUCCUCCCAUCUCAGCCUCUCGAGUAGCUGGGACCACAGUUGUGUGCCACCACACUUGGCUA2000000006ACUUUUUAAUUUUUUUGCGGAGACGGUAUUGCUAUGUUGCCAAGGUUGUUUACAUGCCAGUACAAUUUAUAAUAAACACUCAUUUUUCCUCCC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1	562	592	719	752	826	949	1049	1112	1120	1166	1275	1320	1542
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A
Genomic Coordinates	19:6531026:+	19:6534852:+	19:6534882:+	19:6535009:+	19:6535042:+	19:6535116:+	19:6535239:+	19:6535339:+	19:6535402:+	19:6535410:+	19:6535456:+	19:6535565:+	19:6535610:+	19:6535832:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G dknfVe6BK8aP Mk6ShCGm6RBJ	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ	BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ