Modomics - A Database of RNA Modifications

General Data

RNA Type pseudogene
Original Source Sci-ModoM
Transcript ID: ENST00000596811
Gene ID: ENSG00000268222
Gene Name: EEF1A1P7
Sequence (UNICHARACTER ENCODING) AUGGGAAAGGAGAAGACUCAUAUCAACAUUGUCGUCAAUGGACACAUAGAUUCGGGCAAGUCCACCUCUACUGGCCAUCUGAUCUACAAAUGUGGUGGCAUCAACAAAAGAAGCAUUAAGAAAUUUGAGAAGAAGGCUGCUGAGAUGGGAAAGGGCUCCUUCAAGUAЖGCCUGGGUCUUGGAUAAACUGAAAGCUGAGCGUGAAUGUGGUAUCACCAUUGAUACCUCCUUGUGGAAAUUUGAGACCAGCAAGUACUGЖAUGACUAUCAUUAAUGCCCCUAAGGAAUGAGACCCAGGACACAGAGACUUCAUCACAAACAUCUUUACAGGGACAUCUCAGGCUGACUGUGCUGUCCUGGUUGUUGCUGCUGGUGUUGGUGAAUUUGAAGCUGGUAUCUCCAAGAACUGGCAGACCUGAGAGCAUGCCCUUCUGGCUUACACAUUGGGUGUGAAAUAACUAAUCACUGGUGUUAACAAAAUGGAUUUUAUUGAGCCACCCUACAACCAGAAGAGAUAUGAGGAAAUCAUUAAGGAAGUCAGCACUAUAUUAAGAAAAUUGGCUACAACCCUGACACAGUAGCAUUUGUGCCAAUUUCUGGUUGGAAUAGUGACAACAUGCUGGAGCCAAGUGCUAACAUGCCUUGGUUCAAGGGAUGGAAAGUCACCCGUAAGGAUGGCAAUGCCAGUGGAACCAUACUGCUUGAGGCUCUGGACUGCAUCCUACCACCAACUCGUCCAACUGACAAGCCCUGCUUCUCCAGGAUGUCUACAAAAUUGGUGGUAUUGGUACUGUUCCUGAUGGCCAAGUGGAGACUGUUGCUCUCAAACCUGGUGUGGUGAUCACCUUUGCUCCAGUCAACACUACAACUGAAGUAAAAUCUGUCAAAAUGCACCAUGAAGCUUUGAGUGAAGCUUUUUCUGGGGACAAUGUGGGCUUCCAUGUCAAGAAUGUGUCUGUCAAGGAUAUUCAUUGUAGUAACAAUGCUGGUAACUGCAAAAAUGACCCACCAAUGGAAGCAGCUGGЖUUCACUGCUCAGGUGAUCUAUCCUGAACCAUCCAGGCCAAGUCAGUGCUGGCUAUGCCCCUGUACUAGAUUGCCACAUGGCUCACAUUGCAUGCAAGUUUGCUGAGCUGAAGGAAAAGAUUGAUCGCUCUUCUGGUAAAAAGCUGGAAGACGGCCCUAAAUUCUUGAAAUCUGGUGAUGUUGCCAUCAUUGAUAUGGUUCCUGGUAAGCCCAUGUGUGUUGAGAGCUUCUCAGACUAUCCACCUCUGGGUUGCUUUGCUGCUUGUGAUAUGAGACAGACAGUUGCACUGGGUGUCAUCAAAGCAGCGGACAAGAAGGCAGCUGGAGCUGGCAAGGUCACCAAGUAUCCCCAGAAAGCUCAGAAGGCUAAA
Sequence (SHORT NAMES ENCODING) AUGGGAAAGGAGAAGACUCAUAUCAACAUUGUCGUCAAUGGACACAUAGAUUCGGGCAAGUCCACCUCUACUGGCCAUCUGAUCUACAAAUGUGGUGGCAUCAACAAAAGAAGCAUUAAGAAAUUUGAGAAGAAGGCUGCUGAGAUGGGAAAGGGCUCCUUCAAGUAm6AGCCUGGGUCUUGGAUAAACUGAAAGCUGAGCGUGAAUGUGGUAUCACCAUUGAUACCUCCUUGUGGAAAUUUGAGACCAGCAAGUACUGm6AAUGACUAUCAUUAAUGCCCCUAAGGAAUGAGACCCAGGACACAGAGACUUCAUCACAAACAUCUUUACAGGGACAUCUCAGGCUGACUGUGCUGUCCUGGUUGUUGCUGCUGGUGUUGGUGAAUUUGAAGCUGGUAUCUCCAAGAACUGGCAGACCUGAGAGCAUGCCCUUCUGGCUUACACAUUGGGUGUGAAAUAACUAAUCACUGGUGUUAACAAAAUGGAUUUUAUUGAGCCACCCUACAACCAGAAGAGAUAUGAGGAAAUCAUUAAGGAAGUCAGCACUAUAUUAAGAAAAUUGGCUACAACCCUGACACAGUAGCAUUUGUGCCAAUUUCUGGUUGGAAUAGUGACAACAUGCUGGAGCCAAGUGCUAACAUGCCUUGGUUCAAGGGAUGGAAAGUCACCCGUAAGGAUGGCAAUGCCAGUGGAACCAUACUGCUUGAGGCUCUGGACUGCAUCCUACCACCAACUCGUCCAACUGACAAGCCCUGCUUCUCCAGGAUGUCUACAAAAUUGGUGGUAUUGGUACUGUUCCUGAUGGCCAAGUGGAGACUGUUGCUCUCAAACCUGGUGUGGUGAUCACCUUUGCUCCAGUCAACACUACAACUGAAGUAAAAUCUGUCAAAAUGCACCAUGAAGCUUUGAGUGAAGCUUUUUCUGGGGACAAUGUGGGCUUCCAUGUCAAGAAUGUGUCUGUCAAGGAUAUUCAUUGUAGUAACAAUGCUGGUAACUGCAAAAAUGACCCACCAAUGGAAGCAGCUGGm6AUUCACUGCUCAGGUGAUCUAUCCUGAACCAUCCAGGCCAAGUCAGUGCUGGCUAUGCCCCUGUACUAGAUUGCCACAUGGCUCACAUUGCAUGCAAGUUUGCUGAGCUGAAGGAAAAGAUUGAUCGCUCUUCUGGUAAAAAGCUGGAAGACGGCCCUAAAUUCUUGAAAUCUGGUGAUGUUGCCAUCAUUGAUAUGGUUCCUGGUAAGCCCAUGUGUGUUGAGAGCUUCUCAGACUAUCCACCUCUGGGUUGCUUUGCUGCUUGUGAUAUGAGACAGACAGUUGCACUGGGUGUCAUCAAAGCAGCGGACAAGAAGGCAGCUGGAGCUGGCAAGGUCACCAAGUAUCCCCAGAAAGCUCAGAAGGCUAAA
Sequence (MODOMICS CODE ENCODING) AUGGGAAAGGAGAAGACUCAUAUCAACAUUGUCGUCAAUGGACACAUAGAUUCGGGCAAGUCCACCUCUACUGGCCAUCUGAUCUACAAAUGUGGUGGCAUCAACAAAAGAAGCAUUAAGAAAUUUGAGAAGAAGGCUGCUGAGAUGGGAAAGGGCUCCUUCAAGUA2000000006AGCCUGGGUCUUGGAUAAACUGAAAGCUGAGCGUGAAUGUGGUAUCACCAUUGAUACCUCCUUGUGGAAAUUUGAGACCAGCAAGUACUG2000000006AAUGACUAUCAUUAAUGCCCCUAAGGAAUGAGACCCAGGACACAGAGACUUCAUCACAAACAUCUUUACAGGGACAUCUCAGGCUGACUGUGCUGUCCUGGUUGUUGCUGCUGGUGUUGGUGAAUUUGAAGCUGGUAUCUCCAAGAACUGGCAGACCUGAGAGCAUGCCCUUCUGGCUUACACAUUGGGUGUGAAAUAACUAAUCACUGGUGUUAACAAAAUGGAUUUUAUUGAGCCACCCUACAACCAGAAGAGAUAUGAGGAAAUCAUUAAGGAAGUCAGCACUAUAUUAAGAAAAUUGGCUACAACCCUGACACAGUAGCAUUUGUGCCAAUUUCUGGUUGGAAUAGUGACAACAUGCUGGAGCCAAGUGCUAACAUGCCUUGGUUCAAGGGAUGGAAAGUCACCCGUAAGGAUGGCAAUGCCAGUGGAACCAUACUGCUUGAGGCUCUGGACUGCAUCCUACCACCAACUCGUCCAACUGACAAGCCCUGCUUCUCCAGGAUGUCUACAAAAUUGGUGGUAUUGGUACUGUUCCUGAUGGCCAAGUGGAGACUGUUGCUCUCAAACCUGGUGUGGUGAUCACCUUUGCUCCAGUCAACACUACAACUGAAGUAAAAUCUGUCAAAAUGCACCAUGAAGCUUUGAGUGAAGCUUUUUCUGGGGACAAUGUGGGCUUCCAUGUCAAGAAUGUGUCUGUCAAGGAUAUUCAUUGUAGUAACAAUGCUGGUAACUGCAAAAAUGACCCACCAAUGGAAGCAGCUGG2000000006AUUCACUGCUCAGGUGAUCUAUCCUGAACCAUCCAGGCCAAGUCAGUGCUGGCUAUGCCCCUGUACUAGAUUGCCACAUGGCUCACAUUGCAUGCAAGUUUGCUGAGCUGAAGGAAAAGAUUGAUCGCUCUUCUGGUAAAAAGCUGGAAGACGGCCCUAAAUUCUUGAAAUCUGGUGAUGUUGCCAUCAUUGAUAUGGUUCCUGGUAAGCCCAUGUGUGUUGAGAGCUUCUCAGACUAUCCACCUCUGGGUUGCUUUGCUGCUUGUGAUAUGAGACAGACAGUUGCACUGGGUGUCAUCAAAGCAGCGGACAAGAAGGCAGCUGGAGCUGGCAAGGUCACCAAGUAUCCCCAGAAAGCUCAGAAGGCUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 168 258 1024
Modification Positions m6A m6A m6A
Genomic Coordinates 19:35382339:+ 19:35382429:+ 19:35383682:+
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5FhTyQVy2tKW
5Nnepx5V7yHo
KRfQJWH4K5KH
Mg9GixDBFQAT
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
2CxsF9wZGeaB
5FhTyQVy2tKW
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
nGifePrmgHfe
VL7zkHvkfkoB
WdHxkJGRmFxn
Y7p6mwddGvEB