General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000588913
Gene ID:	ENSG00000130816
Gene Name:	DNMT1
Sequence (UNICHARACTER ENCODING)	CCUGCCAGGGCUUCAGCGGCAUGAACCGCUUCAAUUCGCGCACCUACUCCAAGUUCAAAAЖCUCUCUGGUGGUUUCCUUCCUCAGCUACUGCGACUACUACCGGCCCCGGUUCUUCCPCCUGGAGAAUGUCAGGAACUUUGUCUCCUUCAAGCGCUCCAUGGUCCUGAAGCUCACCCUCCGCUGCCUGGUCCGCAUGGGCUAUCAGUGCACCUUCGGCGUGCUGCAGGCCGGUCAGUACGGCGUGGCCCAGACUAGGAGGCGGGCCAUCAPCCUGGCCGCGGCCCCUGGAGAGAAGCUCCCUCUGUUCCCGGAGCCACUGCACGUGUUUGCUCCCCGGGCCUGCCAGCUGAGCGUGGUGGUGGAUGACAAGAAGUUUGUGAGCAACAUAACCAGGUUGAGCUCGGGUCCUUUCCGGACCAUCACGGUGCGAGACЖCGAUGUCCGACCUGCCGGAGGUGCGGAAUGGAGCCUCGGCACUGGAGAUCUCCUACAACGGGGAGCCUCAGUCCUGGUUCCAGAGGCAGCUCCGGGGCGCACAGUACCAGCCCAPCCUCAGGGACCACAUCUGUAAGGACAUGAGUGCAUUGGUGGCUGCCCGCAUGCGGCACAPCCCCUUGGCCCCAGGGUCAGACUGGCGCGAUCUGCCCAACAUCGAGGUGCGGCUCUCAGACGGCACCAUGGCCAGGAAGCUGCGGUAUACCCACCAUGACAGGAAGAACGGCCGCAGCAGCUCUGGGGCCCUCCGUGGGGUCUGCUCCUGCGUGGAAGCCGGCAAAGCCUGCGACCCCGCAGCCAGGCAGUUCAACACCCUCAPCCCCUGGUGCCUGCCCCACACCGGGAACCGGCACAACCACUGGGCUGGCCUCUAUGGAAGGCUCGAGUGGGACGGCUUCUUCAGCACAACCGUCACCAACCCCGAGCCCAUGGGCAAGCAGGGCCGCGUGCUCCACCCAGAGCAGCACCGUGUGGUGAGCGUGCGGGAGUGUGCCCGCUCCCAGGGCUUCCCUGACACCUACCGGCUCUUCGGCAACAPCCUGGACAAGCACCGGCAGGUCAGUGGGGCGGCGCCCGCUGGGUCUGGACAGGAAGGAGGCUUCUGUGCCUGUCACCAGGUGGGGCUGGGGCCAGCGCAGUCACUUCCGGGAGGACGCCUGCUGGCUGCCGGGUAGCCCCAUCACUCUCAGUGGGAAGACGGCCCACAGGAGGGACAGUGCUGAGACAUCCGAGUCAGGCUGCGUCCCUAUGCUGGUUCCUUACUGUUUGUUUUUGAGGCAGAGAUUGAGCCAGAAGGACAGUCCGUCGCGCUAAAGGAGCAGGCUAAAACCCAUGGUGGCGACAGCUCACUCGCUGUGGGCAAUGCCGUGCCACCGCCCCUGGCCAAAGCCAUUGGCUUGGAGAUCAAGCUUUGUAUGUUGGCCAAAGCCCGAGAGAGUGCCUCAGCUAAAAUAAAGGAGGAGGAAGCUGCUAAGGACUAGUUCUGCCCUCCCGUCACCCCUGUUUCUGGCACCAGGAAUCCCCAACAUGCACUGAUGUUGUGUUUUUAACAUGUCAAUCUGUCCGUUCACAUGUGUGGUACAUGGUGUUUGUGGCCUUGGCUGЖCAUGAAGCUGUUGUGUGAGGUUCGCUUAUCAACUAAUGAUUUAGUGAUCAAAUUGUGCAGUACUUUGUGCAUUCUGGAUUUUAAAAGUUUUUUAUUAUGCAUUAUAUCAAAUCUACCACUGUAUGAGUGGAAAUUAAGACUPUAUGUAGUUUUUAUAUGUUGUAAUAUUUCUUCAA
Sequence (SHORT NAMES ENCODING)	CCUGCCAGGGCUUCAGCGGCAUGAACCGCUUCAAUUCGCGCACCUACUCCAAGUUCAAAAm6ACUCUCUGGUGGUUUCCUUCCUCAGCUACUGCGACUACUACCGGCCCCGGUUCUUCCYCCUGGAGAAUGUCAGGAACUUUGUCUCCUUCAAGCGCUCCAUGGUCCUGAAGCUCACCCUCCGCUGCCUGGUCCGCAUGGGCUAUCAGUGCACCUUCGGCGUGCUGCAGGCCGGUCAGUACGGCGUGGCCCAGACUAGGAGGCGGGCCAUCAYCCUGGCCGCGGCCCCUGGAGAGAAGCUCCCUCUGUUCCCGGAGCCACUGCACGUGUUUGCUCCCCGGGCCUGCCAGCUGAGCGUGGUGGUGGAUGACAAGAAGUUUGUGAGCAACAUAACCAGGUUGAGCUCGGGUCCUUUCCGGACCAUCACGGUGCGAGACm6ACGAUGUCCGACCUGCCGGAGGUGCGGAAUGGAGCCUCGGCACUGGAGAUCUCCUACAACGGGGAGCCUCAGUCCUGGUUCCAGAGGCAGCUCCGGGGCGCACAGUACCAGCCCAYCCUCAGGGACCACAUCUGUAAGGACAUGAGUGCAUUGGUGGCUGCCCGCAUGCGGCACAYCCCCUUGGCCCCAGGGUCAGACUGGCGCGAUCUGCCCAACAUCGAGGUGCGGCUCUCAGACGGCACCAUGGCCAGGAAGCUGCGGUAUACCCACCAUGACAGGAAGAACGGCCGCAGCAGCUCUGGGGCCCUCCGUGGGGUCUGCUCCUGCGUGGAAGCCGGCAAAGCCUGCGACCCCGCAGCCAGGCAGUUCAACACCCUCAYCCCCUGGUGCCUGCCCCACACCGGGAACCGGCACAACCACUGGGCUGGCCUCUAUGGAAGGCUCGAGUGGGACGGCUUCUUCAGCACAACCGUCACCAACCCCGAGCCCAUGGGCAAGCAGGGCCGCGUGCUCCACCCAGAGCAGCACCGUGUGGUGAGCGUGCGGGAGUGUGCCCGCUCCCAGGGCUUCCCUGACACCUACCGGCUCUUCGGCAACAYCCUGGACAAGCACCGGCAGGUCAGUGGGGCGGCGCCCGCUGGGUCUGGACAGGAAGGAGGCUUCUGUGCCUGUCACCAGGUGGGGCUGGGGCCAGCGCAGUCACUUCCGGGAGGACGCCUGCUGGCUGCCGGGUAGCCCCAUCACUCUCAGUGGGAAGACGGCCCACAGGAGGGACAGUGCUGAGACAUCCGAGUCAGGCUGCGUCCCUAUGCUGGUUCCUUACUGUUUGUUUUUGAGGCAGAGAUUGAGCCAGAAGGACAGUCCGUCGCGCUAAAGGAGCAGGCUAAAACCCAUGGUGGCGACAGCUCACUCGCUGUGGGCAAUGCCGUGCCACCGCCCCUGGCCAAAGCCAUUGGCUUGGAGAUCAAGCUUUGUAUGUUGGCCAAAGCCCGAGAGAGUGCCUCAGCUAAAAUAAAGGAGGAGGAAGCUGCUAAGGACUAGUUCUGCCCUCCCGUCACCCCUGUUUCUGGCACCAGGAAUCCCCAACAUGCACUGAUGUUGUGUUUUUAACAUGUCAAUCUGUCCGUUCACAUGUGUGGUACAUGGUGUUUGUGGCCUUGGCUGm6ACAUGAAGCUGUUGUGUGAGGUUCGCUUAUCAACUAAUGAUUUAGUGAUCAAAUUGUGCAGUACUUUGUGCAUUCUGGAUUUUAAAAGUUUUUUAUUAUGCAUUAUAUCAAAUCUACCACUGUAUGAGUGGAAAUUAAGACUYUAUGUAGUUUUUAUAUGUUGUAAUAUUUCUUCAA
Sequence (MODOMICS CODE ENCODING)	CCUGCCAGGGCUUCAGCGGCAUGAACCGCUUCAAUUCGCGCACCUACUCCAAGUUCAAAA2000000006ACUCUCUGGUGGUUUCCUUCCUCAGCUACUGCGACUACUACCGGCCCCGGUUCUUCC2000000009UCCUGGAGAAUGUCAGGAACUUUGUCUCCUUCAAGCGCUCCAUGGUCCUGAAGCUCACCCUCCGCUGCCUGGUCCGCAUGGGCUAUCAGUGCACCUUCGGCGUGCUGCAGGCCGGUCAGUACGGCGUGGCCCAGACUAGGAGGCGGGCCAUCA2000000009UCCUGGCCGCGGCCCCUGGAGAGAAGCUCCCUCUGUUCCCGGAGCCACUGCACGUGUUUGCUCCCCGGGCCUGCCAGCUGAGCGUGGUGGUGGAUGACAAGAAGUUUGUGAGCAACAUAACCAGGUUGAGCUCGGGUCCUUUCCGGACCAUCACGGUGCGAGAC2000000006ACGAUGUCCGACCUGCCGGAGGUGCGGAAUGGAGCCUCGGCACUGGAGAUCUCCUACAACGGGGAGCCUCAGUCCUGGUUCCAGAGGCAGCUCCGGGGCGCACAGUACCAGCCCA2000000009UCCUCAGGGACCACAUCUGUAAGGACAUGAGUGCAUUGGUGGCUGCCCGCAUGCGGCACA2000000009UCCCCUUGGCCCCAGGGUCAGACUGGCGCGAUCUGCCCAACAUCGAGGUGCGGCUCUCAGACGGCACCAUGGCCAGGAAGCUGCGGUAUACCCACCAUGACAGGAAGAACGGCCGCAGCAGCUCUGGGGCCCUCCGUGGGGUCUGCUCCUGCGUGGAAGCCGGCAAAGCCUGCGACCCCGCAGCCAGGCAGUUCAACACCCUCA2000000009UCCCCUGGUGCCUGCCCCACACCGGGAACCGGCACAACCACUGGGCUGGCCUCUAUGGAAGGCUCGAGUGGGACGGCUUCUUCAGCACAACCGUCACCAACCCCGAGCCCAUGGGCAAGCAGGGCCGCGUGCUCCACCCAGAGCAGCACCGUGUGGUGAGCGUGCGGGAGUGUGCCCGCUCCCAGGGCUUCCCUGACACCUACCGGCUCUUCGGCAACA2000000009UCCUGGACAAGCACCGGCAGGUCAGUGGGGCGGCGCCCGCUGGGUCUGGACAGGAAGGAGGCUUCUGUGCCUGUCACCAGGUGGGGCUGGGGCCAGCGCAGUCACUUCCGGGAGGACGCCUGCUGGCUGCCGGGUAGCCCCAUCACUCUCAGUGGGAAGACGGCCCACAGGAGGGACAGUGCUGAGACAUCCGAGUCAGGCUGCGUCCCUAUGCUGGUUCCUUACUGUUUGUUUUUGAGGCAGAGAUUGAGCCAGAAGGACAGUCCGUCGCGCUAAAGGAGCAGGCUAAAACCCAUGGUGGCGACAGCUCACUCGCUGUGGGCAAUGCCGUGCCACCGCCCCUGGCCAAAGCCAUUGGCUUGGAGAUCAAGCUUUGUAUGUUGGCCAAAGCCCGAGAGAGUGCCUCAGCUAAAAUAAAGGAGGAGGAAGCUGCUAAGGACUAGUUCUGCCCUCCCGUCACCCCUGUUUCUGGCACCAGGAAUCCCCAACAUGCACUGAUGUUGUGUUUUUAACAUGUCAAUCUGUCCGUUCACAUGUGUGGUACAUGGUGUUUGUGGCCUUGGCUG2000000006ACAUGAAGCUGUUGUGUGAGGUUCGCUUAUCAACUAAUGAUUUAGUGAUCAAAUUGUGCAGUACUUUGUGCAUUCUGGAUUUUAAAAGUUUUUUAUUAUGCAUUAUAUCAAAUCUACCACUGUAUGAGUGGAAAUUAAGACU2000000009UUAUGUAGUUUUUAUAUGUUGUAAUAUUUCUUCAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	61	118	271	435	550	610	814	1033	1599	1741
Modification Positions	m6A	Y	Y	m6A	Y	Y	Y	Y	m6A	Y
Genomic Coordinates	19:10140070:-	19:10139785:-	19:10138562:-	19:10137969:-	19:10137854:-	19:10137243:-	19:10136242:-	19:10135755:-	19:10133543:-	19:10133401:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 ArijeGVTwYBw KTLz8piFYdwC KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8