Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000599872
Gene ID: ENSG00000214046
Gene Name: SMIM7
Sequence (UNICHARACTER ENCODING) CUGACACUAACUUCCUUGCCUUUUCCCAUGGCAAGAGCAAGUCAUGGЖCUCUGAACUACUUCCUCUCCCUUUUUUCUAUUUAUUUUAUUUUAUUUUAUAUUUGUGAUGGAGUCUCGCUCUGUCACCCAGGCUGGAGUGUGGUGGUGUGAUCUUGGCUCACUGCAACCUCUGCCUCCCAGGCUGGUCUCUUAACUCCUUACCUCAAAUGAUCCACCCACCUCGGCCUCCCAAAGUGCUGGGAUUAUAGAUGUGAGCCACUGCACCCAGCCCUUCCUCUCCCUUUCUCUUUGGGGUUCCCUUCACAAACAGGUGAGGCAGCUUUUUCAAGGGCAUUCCAAGCACAAAAGACCUUGUUGUACCUAAAUACUAUAAGGGЖCCUGUCAUUGAGGACGAACCAUCACAGCAAGAGGAAUUAUCUCGUGCCGCAUCUUCGCAUAACUGACAGGAUCCCUGGCAAGGAUGUCUCAAUGCAGAAAGUUGGCUAAGUGAЖCUGCAGUAUCUACCCUGGЖCCUAAAAGAЖCUUGCUAAUGUUUUCAAGACUACAAUUCAGAGGCUGUCUGAUUUAAUCUUUGCAUUUACAAAAACACCCUUUUACGUACAUUAAAUGUGGAAUAAAACUAAA
Sequence (SHORT NAMES ENCODING) CUGACACUAACUUCCUUGCCUUUUCCCAUGGCAAGAGCAAGUCAUGGm6ACUCUGAACUACUUCCUCUCCCUUUUUUCUAUUUAUUUUAUUUUAUUUUAUAUUUGUGAUGGAGUCUCGCUCUGUCACCCAGGCUGGAGUGUGGUGGUGUGAUCUUGGCUCACUGCAACCUCUGCCUCCCAGGCUGGUCUCUUAACUCCUUACCUCAAAUGAUCCACCCACCUCGGCCUCCCAAAGUGCUGGGAUUAUAGAUGUGAGCCACUGCACCCAGCCCUUCCUCUCCCUUUCUCUUUGGGGUUCCCUUCACAAACAGGUGAGGCAGCUUUUUCAAGGGCAUUCCAAGCACAAAAGACCUUGUUGUACCUAAAUACUAUAAGGGm6ACCUGUCAUUGAGGACGAACCAUCACAGCAAGAGGAAUUAUCUCGUGCCGCAUCUUCGCAUAACUGACAGGAUCCCUGGCAAGGAUGUCUCAAUGCAGAAAGUUGGCUAAGUGAm6ACUGCAGUAUCUACCCUGGm6ACCUAAAAGAm6ACUUGCUAAUGUUUUCAAGACUACAAUUCAGAGGCUGUCUGAUUUAAUCUUUGCAUUUACAAAAACACCCUUUUACGUACAUUAAAUGUGGAAUAAAACUAAA
Sequence (MODOMICS CODE ENCODING) CUGACACUAACUUCCUUGCCUUUUCCCAUGGCAAGAGCAAGUCAUGG2000000006ACUCUGAACUACUUCCUCUCCCUUUUUUCUAUUUAUUUUAUUUUAUUUUAUAUUUGUGAUGGAGUCUCGCUCUGUCACCCAGGCUGGAGUGUGGUGGUGUGAUCUUGGCUCACUGCAACCUCUGCCUCCCAGGCUGGUCUCUUAACUCCUUACCUCAAAUGAUCCACCCACCUCGGCCUCCCAAAGUGCUGGGAUUAUAGAUGUGAGCCACUGCACCCAGCCCUUCCUCUCCCUUUCUCUUUGGGGUUCCCUUCACAAACAGGUGAGGCAGCUUUUUCAAGGGCAUUCCAAGCACAAAAGACCUUGUUGUACCUAAAUACUAUAAGGG2000000006ACCUGUCAUUGAGGACGAACCAUCACAGCAAGAGGAAUUAUCUCGUGCCGCAUCUUCGCAUAACUGACAGGAUCCCUGGCAAGGAUGUCUCAAUGCAGAAAGUUGGCUAAGUGA2000000006ACUGCAGUAUCUACCCUGG2000000006ACCUAAAAGA2000000006ACUUGCUAAUGUUUUCAAGACUACAAUUCAGAGGCUGUCUGAUUUAAUCUUUGCAUUUACAAAAACACCCUUUUACGUACAUUAAAUGUGGAAUAAAACUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 48 376 490 509 519
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 19:16631440:- 19:16630996:- 19:16630882:- 19:16630863:- 19:16630853:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
6UuHp6YApVKv
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
Yfn77uLS5tv8
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
93arJtwJmuS9
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
6UuHp6YApVKv
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8