General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000591645
Gene ID:	ENSG00000167460
Gene Name:	TPM4
Sequence (UNICHARACTER ENCODING)	GAGAGAGAUCUGGUUUCACAAAUCCACUCCGGGCUUCCUUCCCGGAGUGUCCCCUGCAAACUCCCAUUGCUCUCUGCCCGCCUUCUGCCCUCAGUCCCAUUCUUACACCUUCCGGAGUCGGCCUCAUCAAUCAUAGAUUUCACAAGUCCUUGCAGCCUUACCCUUGGCAAAAGACCAGGAGUGUUUUCCAAGCCCUCCAAAUACUCUUCGGGCGCACCUCGCCUCUGCCUGAAAAUGUGGUGACCUGGAAGAAGAACUCAAGAAUGUUACUAACAAUCUGAAAUCUCUGGAGGCUGCAUCUGAAAAGUAUUCUGAAAAGGAGGACAAAUAUGAAGAAGAAAUUAAACUUCUGUCUGACAAACUGAAAGAGGCUGAGACCCGUGCUGAAUUUGCAGAGAGAACGGUUGCAAAACUGGAAAAGЖCAAUUGAUGACCUGGAAGAGAAACUUGCCCAGGCCAAAGAAGAGAACGUGGGCUUACAUCAGACACUGGAUCAGACACUAAACGAЖCUUAACUGUAUAUAAGCAAAACAGAAGAGUCUUGUUCCAACAGAAACUCUGGAGCUCCGUGGGUCUUUCUCUUCUCUUGUAAGAAGUUCCUUUUGUUAUUGCCAUCUUCGCUUUGCUGGAAAUGUCAAGCAAAUUAUGAAUACЖUGACCAAAUAUUUUGUAUCGGAGAAGCUUUGAGCACCAGUUAAAUCUCAUUCCUUCCCUUUUUUUUUCAAAUGGCACCAGCUUUUUCAGCUCUCUUAUUUUUUCCUUAAGUAGCAUUUAUUCCUAAGGUAGGCAGGGUAUUUCCUAGUAAGCAUACUUUCUUAAGACGGAGGCCAUUUGGUUCCUGGGAGAAUAGGCAGCCCCACACUUUGAAGAAUACAGACCCCAGUAUCUAGUCGUGGAUAUAAUUAAAACGCUGAAGACCAPAACCUUUUGGGUCAACUGUUGGUCAAACUAUAGGAGAGЖCCAGGGACCAUCACAUGGGUAGGGAUUUUCCAUCCAGAGCCAAUAAAAGGЖCUGGUGGGGGCCGGGGGUGGCUAUUGUGGGAAGUCAPAACCCACAGAUAGAUCAACCUAAGAAUCCUGGCCCUUCUCCACUCUCCACCAUGCAGGЖCAAACAUCUUCUCAAGCAGUCAACGUAGAAUGCUUGGGAAAUAGUCAUAAUUACCCACAUAUAGUAAUUAAUAGAUGGUAAUUAAUUGAUCCUUGAUGUGAUGUUCUUUUGCAUAUUUCCUUCAUUCUAAAGUUGUUCCCUGGCCGGGAGCGUUGGCUUUCGCCUGUAAUCCCAACACUUUGGGAGGCCAGGACAGAUCACUUGAGGUCAGGAGUUCGAGACCAGCCCAGCCAACAUGGCGAAACCAUGUCUCUACUAAAAAUACЖAAAAUUAUGGUGACGCCUGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAUCGCUUGAACCCAGGAAGUGGAGACUGCAGUGAGCCGAUAUCGCACCACAGCGCUCCAGCCUGGUCGACAGAGUGAGACUCCAUCUCAAGAAAAAAUAAAAAUAAAGUUGUUCUCUGAAGAGCAAAUGUCUCAUUCCAGUAAUGACCCACUCAGCAGGAAUAUGGUGGAGUUCAGUCCAAUUCAGGUCAGCCAUAUCCAAAAGACCACAAGUCAUUACUAAGUUGAGCAAAAGAGUUUUUAUCUAUUAGCAGAAAGGGCCUCUCUGGCAGCAGAGAUUAAAAACUGGCCCAACUUCAUUUCCAUACUUCAGGGAЖCAGCAAAUUGAGGAUUUACUUAUCUAGGACUUGAAUUCCUUCUUUGGGACCAAGUUAAUAAAAGACCAAGAAACUCCUGAUUAAACUGGAUAAUGAAGGAUUCUGUAGACAGGGCUGCACGUAUCGGCUUUGUUUGACUUCUCUUUUCUCAGUUAЖCAUCUCAGAGCUAGAACAUUCCACAUUCCCCAGCAGCGUGUGGGGGCUGACUAAAGUUUACЖAUUCCAACUAAAAAUCACCCUGCUUCUGGCUUAUCUGAAUCCCUUACCCACCCCACCCCACCACCCUACUCCUAUUUAUUCAGCACCACACUACCCAGGAAAUACACUAGCAAAUUGUGCAAUGGAAUAAAAUCCACACUPUAGAUUCUUGCAACUGUAUCAUAUGUAAUAGUAUCACUUUUUCUACAUUUUGGUCAAAUAAAUUU
Sequence (SHORT NAMES ENCODING)	GAGAGAGAUCUGGUUUCACAAAUCCACUCCGGGCUUCCUUCCCGGAGUGUCCCCUGCAAACUCCCAUUGCUCUCUGCCCGCCUUCUGCCCUCAGUCCCAUUCUUACACCUUCCGGAGUCGGCCUCAUCAAUCAUAGAUUUCACAAGUCCUUGCAGCCUUACCCUUGGCAAAAGACCAGGAGUGUUUUCCAAGCCCUCCAAAUACUCUUCGGGCGCACCUCGCCUCUGCCUGAAAAUGUGGUGACCUGGAAGAAGAACUCAAGAAUGUUACUAACAAUCUGAAAUCUCUGGAGGCUGCAUCUGAAAAGUAUUCUGAAAAGGAGGACAAAUAUGAAGAAGAAAUUAAACUUCUGUCUGACAAACUGAAAGAGGCUGAGACCCGUGCUGAAUUUGCAGAGAGAACGGUUGCAAAACUGGAAAAGm6ACAAUUGAUGACCUGGAAGAGAAACUUGCCCAGGCCAAAGAAGAGAACGUGGGCUUACAUCAGACACUGGAUCAGACACUAAACGAm6ACUUAACUGUAUAUAAGCAAAACAGAAGAGUCUUGUUCCAACAGAAACUCUGGAGCUCCGUGGGUCUUUCUCUUCUCUUGUAAGAAGUUCCUUUUGUUAUUGCCAUCUUCGCUUUGCUGGAAAUGUCAAGCAAAUUAUGAAUACm6AUGACCAAAUAUUUUGUAUCGGAGAAGCUUUGAGCACCAGUUAAAUCUCAUUCCUUCCCUUUUUUUUUCAAAUGGCACCAGCUUUUUCAGCUCUCUUAUUUUUUCCUUAAGUAGCAUUUAUUCCUAAGGUAGGCAGGGUAUUUCCUAGUAAGCAUACUUUCUUAAGACGGAGGCCAUUUGGUUCCUGGGAGAAUAGGCAGCCCCACACUUUGAAGAAUACAGACCCCAGUAUCUAGUCGUGGAUAUAAUUAAAACGCUGAAGACCAYAACCUUUUGGGUCAACUGUUGGUCAAACUAUAGGAGAGm6ACCAGGGACCAUCACAUGGGUAGGGAUUUUCCAUCCAGAGCCAAUAAAAGGm6ACUGGUGGGGGCCGGGGGUGGCUAUUGUGGGAAGUCAYAACCCACAGAUAGAUCAACCUAAGAAUCCUGGCCCUUCUCCACUCUCCACCAUGCAGGm6ACAAACAUCUUCUCAAGCAGUCAACGUAGAAUGCUUGGGAAAUAGUCAUAAUUACCCACAUAUAGUAAUUAAUAGAUGGUAAUUAAUUGAUCCUUGAUGUGAUGUUCUUUUGCAUAUUUCCUUCAUUCUAAAGUUGUUCCCUGGCCGGGAGCGUUGGCUUUCGCCUGUAAUCCCAACACUUUGGGAGGCCAGGACAGAUCACUUGAGGUCAGGAGUUCGAGACCAGCCCAGCCAACAUGGCGAAACCAUGUCUCUACUAAAAAUACm6AAAAAUUAUGGUGACGCCUGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAUCGCUUGAACCCAGGAAGUGGAGACUGCAGUGAGCCGAUAUCGCACCACAGCGCUCCAGCCUGGUCGACAGAGUGAGACUCCAUCUCAAGAAAAAAUAAAAAUAAAGUUGUUCUCUGAAGAGCAAAUGUCUCAUUCCAGUAAUGACCCACUCAGCAGGAAUAUGGUGGAGUUCAGUCCAAUUCAGGUCAGCCAUAUCCAAAAGACCACAAGUCAUUACUAAGUUGAGCAAAAGAGUUUUUAUCUAUUAGCAGAAAGGGCCUCUCUGGCAGCAGAGAUUAAAAACUGGCCCAACUUCAUUUCCAUACUUCAGGGAm6ACAGCAAAUUGAGGAUUUACUUAUCUAGGACUUGAAUUCCUUCUUUGGGACCAAGUUAAUAAAAGACCAAGAAACUCCUGAUUAAACUGGAUAAUGAAGGAUUCUGUAGACAGGGCUGCACGUAUCGGCUUUGUUUGACUUCUCUUUUCUCAGUUAm6ACAUCUCAGAGCUAGAACAUUCCACAUUCCCCAGCAGCGUGUGGGGGCUGACUAAAGUUUACm6AAUUCCAACUAAAAAUCACCCUGCUUCUGGCUUAUCUGAAUCCCUUACCCACCCCACCCCACCACCCUACUCCUAUUUAUUCAGCACCACACUACCCAGGAAAUACACUAGCAAAUUGUGCAAUGGAAUAAAAUCCACACUYUAGAUUCUUGCAACUGUAUCAUAUGUAAUAGUAUCACUUUUUCUACAUUUUGGUCAAAUAAAUUU
Sequence (MODOMICS CODE ENCODING)	GAGAGAGAUCUGGUUUCACAAAUCCACUCCGGGCUUCCUUCCCGGAGUGUCCCCUGCAAACUCCCAUUGCUCUCUGCCCGCCUUCUGCCCUCAGUCCCAUUCUUACACCUUCCGGAGUCGGCCUCAUCAAUCAUAGAUUUCACAAGUCCUUGCAGCCUUACCCUUGGCAAAAGACCAGGAGUGUUUUCCAAGCCCUCCAAAUACUCUUCGGGCGCACCUCGCCUCUGCCUGAAAAUGUGGUGACCUGGAAGAAGAACUCAAGAAUGUUACUAACAAUCUGAAAUCUCUGGAGGCUGCAUCUGAAAAGUAUUCUGAAAAGGAGGACAAAUAUGAAGAAGAAAUUAAACUUCUGUCUGACAAACUGAAAGAGGCUGAGACCCGUGCUGAAUUUGCAGAGAGAACGGUUGCAAAACUGGAAAAG2000000006ACAAUUGAUGACCUGGAAGAGAAACUUGCCCAGGCCAAAGAAGAGAACGUGGGCUUACAUCAGACACUGGAUCAGACACUAAACGA2000000006ACUUAACUGUAUAUAAGCAAAACAGAAGAGUCUUGUUCCAACAGAAACUCUGGAGCUCCGUGGGUCUUUCUCUUCUCUUGUAAGAAGUUCCUUUUGUUAUUGCCAUCUUCGCUUUGCUGGAAAUGUCAAGCAAAUUAUGAAUAC2000000006AUGACCAAAUAUUUUGUAUCGGAGAAGCUUUGAGCACCAGUUAAAUCUCAUUCCUUCCCUUUUUUUUUCAAAUGGCACCAGCUUUUUCAGCUCUCUUAUUUUUUCCUUAAGUAGCAUUUAUUCCUAAGGUAGGCAGGGUAUUUCCUAGUAAGCAUACUUUCUUAAGACGGAGGCCAUUUGGUUCCUGGGAGAAUAGGCAGCCCCACACUUUGAAGAAUACAGACCCCAGUAUCUAGUCGUGGAUAUAAUUAAAACGCUGAAGACCA2000000009UAACCUUUUGGGUCAACUGUUGGUCAAACUAUAGGAGAG2000000006ACCAGGGACCAUCACAUGGGUAGGGAUUUUCCAUCCAGAGCCAAUAAAAGG2000000006ACUGGUGGGGGCCGGGGGUGGCUAUUGUGGGAAGUCA2000000009UAACCCACAGAUAGAUCAACCUAAGAAUCCUGGCCCUUCUCCACUCUCCACCAUGCAGG2000000006ACAAACAUCUUCUCAAGCAGUCAACGUAGAAUGCUUGGGAAAUAGUCAUAAUUACCCACAUAUAGUAAUUAAUAGAUGGUAAUUAAUUGAUCCUUGAUGUGAUGUUCUUUUGCAUAUUUCCUUCAUUCUAAAGUUGUUCCCUGGCCGGGAGCGUUGGCUUUCGCCUGUAAUCCCAACACUUUGGGAGGCCAGGACAGAUCACUUGAGGUCAGGAGUUCGAGACCAGCCCAGCCAACAUGGCGAAACCAUGUCUCUACUAAAAAUAC2000000006AAAAAUUAUGGUGACGCCUGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAUCGCUUGAACCCAGGAAGUGGAGACUGCAGUGAGCCGAUAUCGCACCACAGCGCUCCAGCCUGGUCGACAGAGUGAGACUCCAUCUCAAGAAAAAAUAAAAAUAAAGUUGUUCUCUGAAGAGCAAAUGUCUCAUUCCAGUAAUGACCCACUCAGCAGGAAUAUGGUGGAGUUCAGUCCAAUUCAGGUCAGCCAUAUCCAAAAGACCACAAGUCAUUACUAAGUUGAGCAAAAGAGUUUUUAUCUAUUAGCAGAAAGGGCCUCUCUGGCAGCAGAGAUUAAAAACUGGCCCAACUUCAUUUCCAUACUUCAGGGA2000000006ACAGCAAAUUGAGGAUUUACUUAUCUAGGACUUGAAUUCCUUCUUUGGGACCAAGUUAAUAAAAGACCAAGAAACUCCUGAUUAAACUGGAUAAUGAAGGAUUCUGUAGACAGGGCUGCACGUAUCGGCUUUGUUUGACUUCUCUUUUCUCAGUUA2000000006ACAUCUCAGAGCUAGAACAUUCCACAUUCCCCAGCAGCGUGUGGGGGCUGACUAAAGUUUAC2000000006AAUUCCAACUAAAAAUCACCCUGCUUCUGGCUUAUCUGAAUCCCUUACCCACCCCACCCCACCACCCUACUCCUAUUUAUUCAGCACCACACUACCCAGGAAAUACACUAGCAAAUUGUGCAAUGGAAUAAAAUCCACACU2000000009UUAGAUUCUUGCAACUGUAUCAUAUGUAAUAGUAUCACUUUUUCUACAUUUUGGUCAAAUAAAUUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	422	508	652	918	957	1008	1045	1104	1370	1743	1899	1961	2102
Modification Positions	m6A	m6A	m6A	Y	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	19:16093735:+	19:16101331:+	19:16101475:+	19:16101741:+	19:16101780:+	19:16101831:+	19:16101868:+	19:16101927:+	19:16102193:+	19:16102566:+	19:16102722:+	19:16102784:+	19:16102925:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se WiQcrNTGZHPT BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	ArijeGVTwYBw WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8