Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000647557
Gene ID: ENSG00000104824
Gene Name: HNRNPL
Sequence (UNICHARACTER ENCODING) GAGGCGGGUUCUGCGCCGCCAUGUCGCGGAGGCUGCUGCCCCGGGCGGAGAAGCGGCGUCGGCGGCUGGAGCAGAGGCAGCAGCCGGACGAGCAGCGGAGGCGGUCGGGAGCGAUGGUGAAGAUGGCGGCGGCGGGCGGCGGAGGCGGCGGUGGCCGCUACUACGGCGGCGGCAGUGAGGGCGGCCGGGCCCCUAAGCGGCUCAAGACUGACAACGCCGGCGACCAGCACGGAGGCGGCGGCGGUGGCGGUGGAGGAGCCGGGGCGGCGGGCGGCGGCGGCGGUGGGGAGAACUACGAUGACCCGCACAAAACCCCUGCCUCCCCAGUUGUCCACAUCAGGGGCCUGAUUGACGGUGUGGUGGAAGCAGACCUUGUGGAGGCCUUGCAGGAGUUUGGACCCAUCAGCUAUGUGGUGGUAAUGCCUAAAAAGAGACAAGCACUGGUGGAGUUUGAAGAUGUGUUGGGGGCUUGCAACGCAGUGAACUACGCAGCCGACAACCAAAUAUACAUUGCUGGUCACCCAGCUUUUGUCAACUACUCUACCAGCCAGAAGAUCUCCCGCCCUGGGGACUCGGAUGACUCCCGGAGCGUGAACAGUGUGCUUCUCUPUACCAPCCUGAACCCCAUUUAUUCGAUCACCACGGAUGUUCUPUACЖCUAUCUGUAAUCCUUGUGGCCCUGUCCAGAGAAUUGUCAUUUUCAGGAAGAAUGGAGUUCAGGCGAUGGUGGAAUUUGACUCAGUUCAAAGUGCCCAGCGGGCCAAGGCCUCUCUCAAUGGGGCUGAUAUCUAUUCUGGCUGUUGCACUCUGAAGAUCGAAUACGCAAAGCCUACACGCUUGAAUGUGUUCAAGAAUGAUCAGGAUACUUGGGACUACЖCAAACCCCAAUCUCAGUGGACAAGGUGACCCUGGCAGCAACCCCAACAAACGCCAGAGGCAGCCCCCUCUCCUGGGAGAUCACCCCGCAGAAUAUGGUGAGGGCAGGGGGUUCCCCUCCGUGGACUCCCGUGGCUCAUGUGCCCCUGCCCGCCGCCCGCCGUGCAAAUUCUCACCCGUCCUCCCUCUCUUUCCUUCCCACCCCCCAGGAGGGCCCCACGGUGGGUACCACAGCCAUUACCAUGAUGAGGGCUACGGGCCCCCCCCACCUCACUACGAAGGGAGAAGGAUGGGUCCACCAGUGGGGGGUCACCGUCGGGGCCCAAGUCGCUACGGCCCCCAGUAUGGGCACCCCCCACCCCCUCCCCCACCACCCGAGUAUGGCCCUCЖCGCCGACAGCCCUGUGCUCAUGGUCUAUGGCUUGGAUCAAUCUAAGAUGAACUGUGACCGAGUCUUCAAUGUCUUCUGCUUAUAUGGCAAUGUGGAGAAGGUGAAAUUCAUGAAAAGCAAGCCGGGGGCCGCCAUGGUGGAGAUGGCUGAUGGCUACGCUGUAGЖCCGGGCCAUUACCCACCUCAACAACAACUUCAUGUUUGGGCAGAAGCUGAAUGUCUGUGUCUCCAAGCAGCCAGCCAUCAUGCCUGGUCAGUCAUACGGGUUGGAAGACGGGUCUUGCAGUUACЖAAGACUUCAGUGAAUCCCGGAACAAUCGGUUCUCCACCCCAGAGCAGGCAGCCAAGAACCGCAUCCAGCACCCCAGCAACGUGCUGCACUUCUUCAACGCCCCGCUGGAGGUGACCGAGGAGAACUUCUUUGAGAUCUGCGAUGAGCUGGGAGUGAAGCGGCCAUCUUCUGUGAAAGUAUUCUCAGGCAAAAGUGAGCGCAGCUCCUCUGGACUGCUGGAGUGGGAAUCCAAGAGCGAUGCCCUGGAGACUCUGGGCUUCCUGAЖCCAUUACCAGAUGAAAAACCCAAAUGGUCCAUACCCUUACACUCUGAAGUUGUGUUUCUCCACUGCUCAGCACGCCUCCUAAUUAGGUGCCUAGGAAGAGUCCCAUCUGAGCAGGAAGACAUUUCUCUUUCCUPUAUGCCAUUUUUUGUUUUUGUUAUUUGCAAAAGAUCUUGUAUUCCUUUUUUUUUUUUUUUUUUUUUUUUUUAAAUGCUAGGUUUGUAGAGGCUUACUUAACCUUAAUGGAAACGCUGGAAAUCUGCAGGGGGЖGGGAGAGGGGAACUGUUAUCUCCCAAGAUUAACCUUCACUUUUAAAAAAUUAUUGUACAUGUGAUUUUUUUUUUUCCUGUUCAUACAUUUGUGCUGCCCAUGUACUCUUGGCACAUUUCAAUAAAAUUGUUUGGAAAAUAAACACAGCACUUGCUGGGAUUCCAGGA
Sequence (SHORT NAMES ENCODING) GAGGCGGGUUCUGCGCCGCCAUGUCGCGGAGGCUGCUGCCCCGGGCGGAGAAGCGGCGUCGGCGGCUGGAGCAGAGGCAGCAGCCGGACGAGCAGCGGAGGCGGUCGGGAGCGAUGGUGAAGAUGGCGGCGGCGGGCGGCGGAGGCGGCGGUGGCCGCUACUACGGCGGCGGCAGUGAGGGCGGCCGGGCCCCUAAGCGGCUCAAGACUGACAACGCCGGCGACCAGCACGGAGGCGGCGGCGGUGGCGGUGGAGGAGCCGGGGCGGCGGGCGGCGGCGGCGGUGGGGAGAACUACGAUGACCCGCACAAAACCCCUGCCUCCCCAGUUGUCCACAUCAGGGGCCUGAUUGACGGUGUGGUGGAAGCAGACCUUGUGGAGGCCUUGCAGGAGUUUGGACCCAUCAGCUAUGUGGUGGUAAUGCCUAAAAAGAGACAAGCACUGGUGGAGUUUGAAGAUGUGUUGGGGGCUUGCAACGCAGUGAACUACGCAGCCGACAACCAAAUAUACAUUGCUGGUCACCCAGCUUUUGUCAACUACUCUACCAGCCAGAAGAUCUCCCGCCCUGGGGACUCGGAUGACUCCCGGAGCGUGAACAGUGUGCUUCUCUYUACCAYCCUGAACCCCAUUUAUUCGAUCACCACGGAUGUUCUYUACm6ACUAUCUGUAAUCCUUGUGGCCCUGUCCAGAGAAUUGUCAUUUUCAGGAAGAAUGGAGUUCAGGCGAUGGUGGAAUUUGACUCAGUUCAAAGUGCCCAGCGGGCCAAGGCCUCUCUCAAUGGGGCUGAUAUCUAUUCUGGCUGUUGCACUCUGAAGAUCGAAUACGCAAAGCCUACACGCUUGAAUGUGUUCAAGAAUGAUCAGGAUACUUGGGACUACm6ACAAACCCCAAUCUCAGUGGACAAGGUGACCCUGGCAGCAACCCCAACAAACGCCAGAGGCAGCCCCCUCUCCUGGGAGAUCACCCCGCAGAAUAUGGUGAGGGCAGGGGGUUCCCCUCCGUGGACUCCCGUGGCUCAUGUGCCCCUGCCCGCCGCCCGCCGUGCAAAUUCUCACCCGUCCUCCCUCUCUUUCCUUCCCACCCCCCAGGAGGGCCCCACGGUGGGUACCACAGCCAUUACCAUGAUGAGGGCUACGGGCCCCCCCCACCUCACUACGAAGGGAGAAGGAUGGGUCCACCAGUGGGGGGUCACCGUCGGGGCCCAAGUCGCUACGGCCCCCAGUAUGGGCACCCCCCACCCCCUCCCCCACCACCCGAGUAUGGCCCUCm6ACGCCGACAGCCCUGUGCUCAUGGUCUAUGGCUUGGAUCAAUCUAAGAUGAACUGUGACCGAGUCUUCAAUGUCUUCUGCUUAUAUGGCAAUGUGGAGAAGGUGAAAUUCAUGAAAAGCAAGCCGGGGGCCGCCAUGGUGGAGAUGGCUGAUGGCUACGCUGUAGm6ACCGGGCCAUUACCCACCUCAACAACAACUUCAUGUUUGGGCAGAAGCUGAAUGUCUGUGUCUCCAAGCAGCCAGCCAUCAUGCCUGGUCAGUCAUACGGGUUGGAAGACGGGUCUUGCAGUUACm6AAAGACUUCAGUGAAUCCCGGAACAAUCGGUUCUCCACCCCAGAGCAGGCAGCCAAGAACCGCAUCCAGCACCCCAGCAACGUGCUGCACUUCUUCAACGCCCCGCUGGAGGUGACCGAGGAGAACUUCUUUGAGAUCUGCGAUGAGCUGGGAGUGAAGCGGCCAUCUUCUGUGAAAGUAUUCUCAGGCAAAAGUGAGCGCAGCUCCUCUGGACUGCUGGAGUGGGAAUCCAAGAGCGAUGCCCUGGAGACUCUGGGCUUCCUGAm6ACCAUUACCAGAUGAAAAACCCAAAUGGUCCAUACCCUUACACUCUGAAGUUGUGUUUCUCCACUGCUCAGCACGCCUCCUAAUUAGGUGCCUAGGAAGAGUCCCAUCUGAGCAGGAAGACAUUUCUCUUUCCUYUAUGCCAUUUUUUGUUUUUGUUAUUUGCAAAAGAUCUUGUAUUCCUUUUUUUUUUUUUUUUUUUUUUUUUUAAAUGCUAGGUUUGUAGAGGCUUACUUAACCUUAAUGGAAACGCUGGAAAUCUGCAGGGGGm6AGGGAGAGGGGAACUGUUAUCUCCCAAGAUUAACCUUCACUUUUAAAAAAUUAUUGUACAUGUGAUUUUUUUUUUUCCUGUUCAUACAUUUGUGCUGCCCAUGUACUCUUGGCACAUUUCAAUAAAAUUGUUUGGAAAAUAAACACAGCACUUGCUGGGAUUCCAGGA
Sequence (MODOMICS CODE ENCODING) GAGGCGGGUUCUGCGCCGCCAUGUCGCGGAGGCUGCUGCCCCGGGCGGAGAAGCGGCGUCGGCGGCUGGAGCAGAGGCAGCAGCCGGACGAGCAGCGGAGGCGGUCGGGAGCGAUGGUGAAGAUGGCGGCGGCGGGCGGCGGAGGCGGCGGUGGCCGCUACUACGGCGGCGGCAGUGAGGGCGGCCGGGCCCCUAAGCGGCUCAAGACUGACAACGCCGGCGACCAGCACGGAGGCGGCGGCGGUGGCGGUGGAGGAGCCGGGGCGGCGGGCGGCGGCGGCGGUGGGGAGAACUACGAUGACCCGCACAAAACCCCUGCCUCCCCAGUUGUCCACAUCAGGGGCCUGAUUGACGGUGUGGUGGAAGCAGACCUUGUGGAGGCCUUGCAGGAGUUUGGACCCAUCAGCUAUGUGGUGGUAAUGCCUAAAAAGAGACAAGCACUGGUGGAGUUUGAAGAUGUGUUGGGGGCUUGCAACGCAGUGAACUACGCAGCCGACAACCAAAUAUACAUUGCUGGUCACCCAGCUUUUGUCAACUACUCUACCAGCCAGAAGAUCUCCCGCCCUGGGGACUCGGAUGACUCCCGGAGCGUGAACAGUGUGCUUCUCU2000000009UUACCA2000000009UCCUGAACCCCAUUUAUUCGAUCACCACGGAUGUUCU2000000009UUAC2000000006ACUAUCUGUAAUCCUUGUGGCCCUGUCCAGAGAAUUGUCAUUUUCAGGAAGAAUGGAGUUCAGGCGAUGGUGGAAUUUGACUCAGUUCAAAGUGCCCAGCGGGCCAAGGCCUCUCUCAAUGGGGCUGAUAUCUAUUCUGGCUGUUGCACUCUGAAGAUCGAAUACGCAAAGCCUACACGCUUGAAUGUGUUCAAGAAUGAUCAGGAUACUUGGGACUAC2000000006ACAAACCCCAAUCUCAGUGGACAAGGUGACCCUGGCAGCAACCCCAACAAACGCCAGAGGCAGCCCCCUCUCCUGGGAGAUCACCCCGCAGAAUAUGGUGAGGGCAGGGGGUUCCCCUCCGUGGACUCCCGUGGCUCAUGUGCCCCUGCCCGCCGCCCGCCGUGCAAAUUCUCACCCGUCCUCCCUCUCUUUCCUUCCCACCCCCCAGGAGGGCCCCACGGUGGGUACCACAGCCAUUACCAUGAUGAGGGCUACGGGCCCCCCCCACCUCACUACGAAGGGAGAAGGAUGGGUCCACCAGUGGGGGGUCACCGUCGGGGCCCAAGUCGCUACGGCCCCCAGUAUGGGCACCCCCCACCCCCUCCCCCACCACCCGAGUAUGGCCCUC2000000006ACGCCGACAGCCCUGUGCUCAUGGUCUAUGGCUUGGAUCAAUCUAAGAUGAACUGUGACCGAGUCUUCAAUGUCUUCUGCUUAUAUGGCAAUGUGGAGAAGGUGAAAUUCAUGAAAAGCAAGCCGGGGGCCGCCAUGGUGGAGAUGGCUGAUGGCUACGCUGUAG2000000006ACCGGGCCAUUACCCACCUCAACAACAACUUCAUGUUUGGGCAGAAGCUGAAUGUCUGUGUCUCCAAGCAGCCAGCCAUCAUGCCUGGUCAGUCAUACGGGUUGGAAGACGGGUCUUGCAGUUAC2000000006AAAGACUUCAGUGAAUCCCGGAACAAUCGGUUCUCCACCCCAGAGCAGGCAGCCAAGAACCGCAUCCAGCACCCCAGCAACGUGCUGCACUUCUUCAACGCCCCGCUGGAGGUGACCGAGGAGAACUUCUUUGAGAUCUGCGAUGAGCUGGGAGUGAAGCGGCCAUCUUCUGUGAAAGUAUUCUCAGGCAAAAGUGAGCGCAGCUCCUCUGGACUGCUGGAGUGGGAAUCCAAGAGCGAUGCCCUGGAGACUCUGGGCUUCCUGA2000000006ACCAUUACCAGAUGAAAAACCCAAAUGGUCCAUACCCUUACACUCUGAAGUUGUGUUUCUCCACUGCUCAGCACGCCUCCUAAUUAGGUGCCUAGGAAGAGUCCCAUCUGAGCAGGAAGACAUUUCUCUUUCCU2000000009UUAUGCCAUUUUUUGUUUUUGUUAUUUGCAAAAGAUCUUGUAUUCCUUUUUUUUUUUUUUUUUUUUUUUUUUAAAUGCUAGGUUUGUAGAGGCUUACUUAACCUUAAUGGAAACGCUGGAAAUCUGCAGGGGG2000000006AGGGAGAGGGGAACUGUUAUCUCCCAAGAUUAACCUUCACUUUUAAAAAAUUAUUGUACAUGUGAUUUUUUUUUUUCCUGUUCAUACAUUUGUGCUGCCCAUGUACUCUUGGCACAUUUCAAUAAAAUUGUUUGGAAAAUAAACACAGCACUUGCUGGGAUUCCAGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 610 616 653 657 876 1264 1429 1554 1819 1953 2086
Modification Positions Y Y Y m6A m6A m6A m6A m6A m6A Y m6A
Genomic Coordinates 19:38845887:- 19:38845881:- 19:38845727:- 19:38845723:- 19:38843866:- 19:38840196:- 19:38838951:- 19:38838531:- 19:38837407:- 19:38836670:- 19:38836537:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
3kRDPWwiRCgi
L6w2k2VEv4EY
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
8cMbzB4aD5Se
KTLz8piFYdwC
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
nGifePrmgHfe
VL7zkHvkfkoB
VyCX26p5UBRL
Lny8GcCeVGc9
LZJKems7W2wi