General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000588328
Gene ID:	ENSG00000124299
Gene Name:	PEPD
Sequence (UNICHARACTER ENCODING)	GCЖCUUCACGUGACGCCGGUGCCGGGCGAACAUGGCGGCGGCCACCGGACCCUCGUUUUGGCUGGGGAAUGAAACCCUGAAGGUGCCGCUGGCGCUCUUUGCCUUGAACCGGCAGCGCCUGUGUGAGCGGCUGCGGAAGAACCCUGCUGUGCAGGCCGGCUCCAUCGUGGUCCUGCAGGGCGGGGAGGAGACUCAGCGCUACUGCACCGACACCGGGGUCCUCUUCCGCCAGGAGUCCUUCUUUCACUGGGCGUUCGGUGUCACUGAGCCAGGCUGCUAUGGUGUCAUCGAUGUUGACACUGGGAAGUCGACCCUGUUUGUGCCCAGGCUUCCUGCCAGCCAUGCCACCUGGAUGGGAAAGAUCCAUUCCAAGGAGCACUUCAAGGAGAAGUAUGCCGUGGACGACGUCCAGUACGUAGAUGAGAUUGCCAGCGUCCUGACGUCACAGAAGCCCUCUGUCCUCCUCACUUUGCGUGGCGUCAACACGGACAGCGGCAGUGUCUGCAGGGAGGCCUCCUUUGACGGCAUCAGCAAGUUCGAAGUCAACAAUACCAUUCUUCACCCAGAGAUCGUUGAGUGCCGAGUGUUUAAGACGGAUAUGGAGCUGGAGGUUCUGCGCUAUACCAAUAAAAUCUCCAGCGAGGCCCACCGUGAGGUAAUGAAGGCUGUAAAAGUGGGAAUGAAAGAAUAUGAGUUGGЖAAGCCUCUUCGAGCACUACUGCUACUCCCGGGGCGGCAUGCGCCACAGCUCCUACACCUGCAUCUGCGGCAGUGGUGAGAACUCAGCCGUGCUACACUACGGACACGCCGGAGCUCCCAACGACCGAACGAUCCAGAAUGGGGAUAUGUGCCUGUUCGACAUGGGCGGUGAGUAUUACUGCUUCGCUUCCGACAUCACCUGCUCCUUUCCCGCCAACGGCAAGUUCACUGCAGACCAGAAGGCCGUCUAUGAGGCAGUGCUGCGGAGCUCCCGUGCCGUCAUGGGUGCCAUGAAGCCAGGUGCCAGGACGGGGAGGACUGUCUUCAGUGUGGGCACCAUGUCCACCCCUCCUGCCGGCCGCAAUGGUGUCUGGUGGCCUGACAUGCACCGCCUGGCUGACCGCAPCCACCUGGAGGAGCUGGCCCACAUGGGCAPCCUGAGCGGCAGCGUGGACGCCAUGGUCCAGGCUCACCUGGGGGCCGUGUUUAUGCCUCACGGGCUUGGCCACUUCCUGGGCAUUGACGUGCACGACGUGGGAGGCUACCCAGAGGGCGUGGAGCGCAUCGACGAGCCCGGCCUGCGGAGCCUGCGCACUGCACGGCACCUGCAGCCAGGCAUGGUGCUCACCGUGGAGCCGGGCAUCUACUUCAUCGACCACCPCCUGGAUGAGGCCCUGGCGGACCCGGCCCGCGCCPCCUUCCUUAACCGCGAGGUCCUGCAGCGCUUUCGCGGUUUUGGCGGGGUCCGCAUCGAGGAGGACGUCGUGGUGACUGACAGCGGCAUAGAGCUGCUGACCUGCGUGCCCCGCACUGUGGAAGAGAUUGAAGCAUGCAUGGCAGGCUGUGACAAGGCCUPUACCCCCUUCUCUGGCCCCAAGUAGAGCCAGCCAGAAAUCCCAGCGCACCUGGGGGCCUGGCCUUGCAACCUCUUUUCGUGAUGGGCAGCCUGCUGGUCAGCACUCCAGUAGCGAGAGACGGCACCCAGAAUCAGAUCCCAGCUUCGGCAUUUGAUCAGACCAAACAGUGCUGUUUCCCGGGGAGGAAACACUUUUUUAAUUACCCUUUUGCAGGCUCCCACCUPUAAUCUGUUUUAUACCUUGCUUAUUAAAUGAGCGACUUAAAAUGAUUGAAAAUAAUGCUGUUCUPUAGUAGCAACUAAAAUGUGUCUUGCUGUCAUUUAUAUUCCUUUUCCCAGGAAAGAAGCAUUUCUGAUACUUUCUGUCAAAAAUCAAUAUGCAGAAUGGCAUUUGCAAUAAAAGGUUUCCUAAAAUGG
Sequence (SHORT NAMES ENCODING)	GCm6ACUUCACGUGACGCCGGUGCCGGGCGAACAUGGCGGCGGCCACCGGACCCUCGUUUUGGCUGGGGAAUGAAACCCUGAAGGUGCCGCUGGCGCUCUUUGCCUUGAACCGGCAGCGCCUGUGUGAGCGGCUGCGGAAGAACCCUGCUGUGCAGGCCGGCUCCAUCGUGGUCCUGCAGGGCGGGGAGGAGACUCAGCGCUACUGCACCGACACCGGGGUCCUCUUCCGCCAGGAGUCCUUCUUUCACUGGGCGUUCGGUGUCACUGAGCCAGGCUGCUAUGGUGUCAUCGAUGUUGACACUGGGAAGUCGACCCUGUUUGUGCCCAGGCUUCCUGCCAGCCAUGCCACCUGGAUGGGAAAGAUCCAUUCCAAGGAGCACUUCAAGGAGAAGUAUGCCGUGGACGACGUCCAGUACGUAGAUGAGAUUGCCAGCGUCCUGACGUCACAGAAGCCCUCUGUCCUCCUCACUUUGCGUGGCGUCAACACGGACAGCGGCAGUGUCUGCAGGGAGGCCUCCUUUGACGGCAUCAGCAAGUUCGAAGUCAACAAUACCAUUCUUCACCCAGAGAUCGUUGAGUGCCGAGUGUUUAAGACGGAUAUGGAGCUGGAGGUUCUGCGCUAUACCAAUAAAAUCUCCAGCGAGGCCCACCGUGAGGUAAUGAAGGCUGUAAAAGUGGGAAUGAAAGAAUAUGAGUUGGm6AAAGCCUCUUCGAGCACUACUGCUACUCCCGGGGCGGCAUGCGCCACAGCUCCUACACCUGCAUCUGCGGCAGUGGUGAGAACUCAGCCGUGCUACACUACGGACACGCCGGAGCUCCCAACGACCGAACGAUCCAGAAUGGGGAUAUGUGCCUGUUCGACAUGGGCGGUGAGUAUUACUGCUUCGCUUCCGACAUCACCUGCUCCUUUCCCGCCAACGGCAAGUUCACUGCAGACCAGAAGGCCGUCUAUGAGGCAGUGCUGCGGAGCUCCCGUGCCGUCAUGGGUGCCAUGAAGCCAGGUGCCAGGACGGGGAGGACUGUCUUCAGUGUGGGCACCAUGUCCACCCCUCCUGCCGGCCGCAAUGGUGUCUGGUGGCCUGACAUGCACCGCCUGGCUGACCGCAYCCACCUGGAGGAGCUGGCCCACAUGGGCAYCCUGAGCGGCAGCGUGGACGCCAUGGUCCAGGCUCACCUGGGGGCCGUGUUUAUGCCUCACGGGCUUGGCCACUUCCUGGGCAUUGACGUGCACGACGUGGGAGGCUACCCAGAGGGCGUGGAGCGCAUCGACGAGCCCGGCCUGCGGAGCCUGCGCACUGCACGGCACCUGCAGCCAGGCAUGGUGCUCACCGUGGAGCCGGGCAUCUACUUCAUCGACCACCYCCUGGAUGAGGCCCUGGCGGACCCGGCCCGCGCCYCCUUCCUUAACCGCGAGGUCCUGCAGCGCUUUCGCGGUUUUGGCGGGGUCCGCAUCGAGGAGGACGUCGUGGUGACUGACAGCGGCAUAGAGCUGCUGACCUGCGUGCCCCGCACUGUGGAAGAGAUUGAAGCAUGCAUGGCAGGCUGUGACAAGGCCUYUACCCCCUUCUCUGGCCCCAAGUAGAGCCAGCCAGAAAUCCCAGCGCACCUGGGGGCCUGGCCUUGCAACCUCUUUUCGUGAUGGGCAGCCUGCUGGUCAGCACUCCAGUAGCGAGAGACGGCACCCAGAAUCAGAUCCCAGCUUCGGCAUUUGAUCAGACCAAACAGUGCUGUUUCCCGGGGAGGAAACACUUUUUUAAUUACCCUUUUGCAGGCUCCCACCUYUAAUCUGUUUUAUACCUUGCUUAUUAAAUGAGCGACUUAAAAUGAUUGAAAAUAAUGCUGUUCUYUAGUAGCAACUAAAAUGUGUCUUGCUGUCAUUUAUAUUCCUUUUCCCAGGAAAGAAGCAUUUCUGAUACUUUCUGUCAAAAAUCAAUAUGCAGAAUGGCAUUUGCAAUAAAAGGUUUCCUAAAAUGG
Sequence (MODOMICS CODE ENCODING)	GC2000000006ACUUCACGUGACGCCGGUGCCGGGCGAACAUGGCGGCGGCCACCGGACCCUCGUUUUGGCUGGGGAAUGAAACCCUGAAGGUGCCGCUGGCGCUCUUUGCCUUGAACCGGCAGCGCCUGUGUGAGCGGCUGCGGAAGAACCCUGCUGUGCAGGCCGGCUCCAUCGUGGUCCUGCAGGGCGGGGAGGAGACUCAGCGCUACUGCACCGACACCGGGGUCCUCUUCCGCCAGGAGUCCUUCUUUCACUGGGCGUUCGGUGUCACUGAGCCAGGCUGCUAUGGUGUCAUCGAUGUUGACACUGGGAAGUCGACCCUGUUUGUGCCCAGGCUUCCUGCCAGCCAUGCCACCUGGAUGGGAAAGAUCCAUUCCAAGGAGCACUUCAAGGAGAAGUAUGCCGUGGACGACGUCCAGUACGUAGAUGAGAUUGCCAGCGUCCUGACGUCACAGAAGCCCUCUGUCCUCCUCACUUUGCGUGGCGUCAACACGGACAGCGGCAGUGUCUGCAGGGAGGCCUCCUUUGACGGCAUCAGCAAGUUCGAAGUCAACAAUACCAUUCUUCACCCAGAGAUCGUUGAGUGCCGAGUGUUUAAGACGGAUAUGGAGCUGGAGGUUCUGCGCUAUACCAAUAAAAUCUCCAGCGAGGCCCACCGUGAGGUAAUGAAGGCUGUAAAAGUGGGAAUGAAAGAAUAUGAGUUGG2000000006AAAGCCUCUUCGAGCACUACUGCUACUCCCGGGGCGGCAUGCGCCACAGCUCCUACACCUGCAUCUGCGGCAGUGGUGAGAACUCAGCCGUGCUACACUACGGACACGCCGGAGCUCCCAACGACCGAACGAUCCAGAAUGGGGAUAUGUGCCUGUUCGACAUGGGCGGUGAGUAUUACUGCUUCGCUUCCGACAUCACCUGCUCCUUUCCCGCCAACGGCAAGUUCACUGCAGACCAGAAGGCCGUCUAUGAGGCAGUGCUGCGGAGCUCCCGUGCCGUCAUGGGUGCCAUGAAGCCAGGUGCCAGGACGGGGAGGACUGUCUUCAGUGUGGGCACCAUGUCCACCCCUCCUGCCGGCCGCAAUGGUGUCUGGUGGCCUGACAUGCACCGCCUGGCUGACCGCA2000000009UCCACCUGGAGGAGCUGGCCCACAUGGGCA2000000009UCCUGAGCGGCAGCGUGGACGCCAUGGUCCAGGCUCACCUGGGGGCCGUGUUUAUGCCUCACGGGCUUGGCCACUUCCUGGGCAUUGACGUGCACGACGUGGGAGGCUACCCAGAGGGCGUGGAGCGCAUCGACGAGCCCGGCCUGCGGAGCCUGCGCACUGCACGGCACCUGCAGCCAGGCAUGGUGCUCACCGUGGAGCCGGGCAUCUACUUCAUCGACCACC2000000009UCCUGGAUGAGGCCCUGGCGGACCCGGCCCGCGCC2000000009UCCUUCCUUAACCGCGAGGUCCUGCAGCGCUUUCGCGGUUUUGGCGGGGUCCGCAUCGAGGAGGACGUCGUGGUGACUGACAGCGGCAUAGAGCUGCUGACCUGCGUGCCCCGCACUGUGGAAGAGAUUGAAGCAUGCAUGGCAGGCUGUGACAAGGCCU2000000009UUACCCCCUUCUCUGGCCCCAAGUAGAGCCAGCCAGAAAUCCCAGCGCACCUGGGGGCCUGGCCUUGCAACCUCUUUUCGUGAUGGGCAGCCUGCUGGUCAGCACUCCAGUAGCGAGAGACGGCACCCAGAAUCAGAUCCCAGCUUCGGCAUUUGAUCAGACCAAACAGUGCUGUUUCCCGGGGAGGAAACACUUUUUUAAUUACCCUUUUGCAGGCUCCCACCU2000000009UUAAUCUGUUUUAUACCUUGCUUAUUAAAUGAGCGACUUAAAAUGAUUGAAAAUAAUGCUGUUCU2000000009UUAGUAGCAACUAAAAUGUGUCUUGCUGUCAUUUAUAUUCCUUUUCCCAGGAAAGAAGCAUUUCUGAUACUUUCUGUCAAAAAUCAAUAUGCAGAAUGGCAUUUGCAAUAAAAGGUUUCCUAAAAUGG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	3	699	1104	1134	1359	1394	1554	1779	1844
Modification Positions	m6A	m6A	Y	Y	Y	Y	Y	Y	Y
Genomic Coordinates	19:33521789:-	19:33462998:-	19:33391440:-	19:33391410:-	19:33387972:-	19:33387937:-	19:33387369:-	19:33387144:-	19:33387079:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8