Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000012443
Gene ID: ENSG00000011485
Gene Name: PPP5C
Sequence (UNICHARACTER ENCODING) GCUUUGCGGCAUGGCGAUGGCGGAGGGCGAGAGGЖCUGAGUGUGCUGAGCCCCCCCGGGACGAACCCCCGGCUGAUGGAGCUCUGAAGCGGGCAGAGGAGCUCAAGACUCAGGCCAAUGACUACUUCAAAGCCAAGGACUACGAGAACGCCAUCAAGUUCUACAGCCAGGCCAUCGAGCUGAACCCCAGCAAUGCCAUCUACUAUGGCAACCGCAGCCUGGCCUACCUGCGCACUGAGUGCUAUGGCUACGCGCUGGGAGACGCCACGCGGGCCAUUGAGCUGGACAAGAAGUACAUCAAGGGUUAUUACCGCCGGGCUGCCAGCAACAUGGCACUGGGCAAGUUCCGGGCCGCGCUGCGAGACUACGAGACGGUGGUCAAGGUGAAGCCCCAUGACAAGGAUGCCAAAAUGAAAUACCAGGAGUGCAACAAGAUCGUGAAGCAGAAGGCCUUUGAGCGGGCCAUCGCGGGCGACGAGCACAAGCGCUCCGUGGUGGACUCGCUGGACAUCGAGAGCAUGACCAUUGAGGAUGAGUACAGCGGACCCAAGCUUGAAGACGGCAAAGUGACAAUCAGUUUCAUGAAGGAGCUCAUGCAGUGGUACAAGGACCAGAAGAAACUGCACCGGAAAUGUGCCUACCAGAUUCUGGUACAGGUCAAAGAGGUCCUCUCCAAGCUGAGCACGCUCGUGGAAACCACACUCAAAGAGACAGAGAAGAUUACAGUAUGUGGGGACACCCAUGGCCAGUUCUAUGACCUCCUCAACAUAUUCGAGCUCAACGGUUUACCCUCGGAGЖCCAACCCCUAUAUAUUUAAUGGUGACUUUGUGGACCGAGGCUCCUUCUCUGUAGAAGUGAUCCUCACCCUUUUCGGCUUCAAGCUCCUGUACCCAGAUCACUUUCACCUCCUUCGAGGCAACCACGAGACAGЖCAACAUGAACCAGAUCUACGGUUUCGAGGGUGAGGUGAAGGCCAAGUACACAGCCCAGAUGUACGAGCUCUPUAGCGAGGUGUUCGAGUGGCUCCCGUUGGCCCAGUGCAUCAACGGCAAAGUGCUGAUCAUGCACGGAGGCCUGUUCAGUGAAGACGGUGUCACCCUGGAUGACAPCCGGAAAAUUGAGCGGAAUCGACAACCCCCAGAUUCAGGGCCCAUGUGUGACCUGCUCUGGUCAGAUCCACAGCCACAGAACGGGCGCUCGAUCAGCAAGCGGGGCGUGAGCUGUCAGUUUGGGCCUGACGUCACCAAGGCCUUCUUGGAAGAGAACAACCUGGACUAUAUCAPCCGCAGCCACGAAGUCAAGGCCGAGGGCUACGAGGUGGCUCACGGAGGCCGCUGUGUCACCGUCUUCUCUGCCCCCAACUACUGCGACCAGAUGGGGAACAAAGCCUCCUACAPCCACCPCCAGGGCUCUGACCUACGGCCUCAGUUCCACCAGUUCACAGCAGUGCCUCAPCCCAACGUCAAGCCCAUGGCCUAUGCCAACACGCUGCUGCAGCUAGGAAUGAUGUGAGGUGACGGGCGGGGCGGCCUGCAUCCCAGGGCCCCUCCAAUCCCACCGGACCCAGGCCCUGGGCUAGGGGCAGAGCAGGCCCCGCCCCAGGGCAAUGUUGGACCCCCUUUUACUUUGUAAAGUUUGUAUUUAUUCCCCUPUAGGUUUGCAGAGGGGGUAGGGGCAGAGUCAGGGGCUGGCCAGAGGGUCUGCUCCCUGGACAGAGAGGAAGGAGGUGGAGCAGCUGGGGCUGGGGGCACAGCCUGGGCAUUCUGUGGGGAGGCCGUCCUCGGGGUGGGGUGGGGCCGAGUGGCUGCCCUGCCCCCCUCAUUUGCAUGGCUCCUCCCCCACUCAAGCAAUAGGGCCCCGCCAUAGGAAGACCCCCAGAGAGAGGGUCAGCAGGGGGGCCCCGCCUGCGCCUCCCCPCCUAUAGCCCCAUGGUGGGGCUAGGCUGGGGCUCACCCCCCUCCCCAGCUAUUUUAUGUCUGUAAUUAAAUAUGUUAAAAUAAAGUCAUUAUCGGAAGUCAGCUUGUCUCUGGAUGGUGGAGCCGAAGGAGCUGCCCGGGUUGGGUUACGCCUGCUCAGGAGAUCCGGAGGGUGGGGAGGCCGCAAAGUCCCGCUGGCCGGGCCCACCCAGCUCUGGGCUGACC
Sequence (SHORT NAMES ENCODING) GCUUUGCGGCAUGGCGAUGGCGGAGGGCGAGAGGm6ACUGAGUGUGCUGAGCCCCCCCGGGACGAACCCCCGGCUGAUGGAGCUCUGAAGCGGGCAGAGGAGCUCAAGACUCAGGCCAAUGACUACUUCAAAGCCAAGGACUACGAGAACGCCAUCAAGUUCUACAGCCAGGCCAUCGAGCUGAACCCCAGCAAUGCCAUCUACUAUGGCAACCGCAGCCUGGCCUACCUGCGCACUGAGUGCUAUGGCUACGCGCUGGGAGACGCCACGCGGGCCAUUGAGCUGGACAAGAAGUACAUCAAGGGUUAUUACCGCCGGGCUGCCAGCAACAUGGCACUGGGCAAGUUCCGGGCCGCGCUGCGAGACUACGAGACGGUGGUCAAGGUGAAGCCCCAUGACAAGGAUGCCAAAAUGAAAUACCAGGAGUGCAACAAGAUCGUGAAGCAGAAGGCCUUUGAGCGGGCCAUCGCGGGCGACGAGCACAAGCGCUCCGUGGUGGACUCGCUGGACAUCGAGAGCAUGACCAUUGAGGAUGAGUACAGCGGACCCAAGCUUGAAGACGGCAAAGUGACAAUCAGUUUCAUGAAGGAGCUCAUGCAGUGGUACAAGGACCAGAAGAAACUGCACCGGAAAUGUGCCUACCAGAUUCUGGUACAGGUCAAAGAGGUCCUCUCCAAGCUGAGCACGCUCGUGGAAACCACACUCAAAGAGACAGAGAAGAUUACAGUAUGUGGGGACACCCAUGGCCAGUUCUAUGACCUCCUCAACAUAUUCGAGCUCAACGGUUUACCCUCGGAGm6ACCAACCCCUAUAUAUUUAAUGGUGACUUUGUGGACCGAGGCUCCUUCUCUGUAGAAGUGAUCCUCACCCUUUUCGGCUUCAAGCUCCUGUACCCAGAUCACUUUCACCUCCUUCGAGGCAACCACGAGACAGm6ACAACAUGAACCAGAUCUACGGUUUCGAGGGUGAGGUGAAGGCCAAGUACACAGCCCAGAUGUACGAGCUCUYUAGCGAGGUGUUCGAGUGGCUCCCGUUGGCCCAGUGCAUCAACGGCAAAGUGCUGAUCAUGCACGGAGGCCUGUUCAGUGAAGACGGUGUCACCCUGGAUGACAYCCGGAAAAUUGAGCGGAAUCGACAACCCCCAGAUUCAGGGCCCAUGUGUGACCUGCUCUGGUCAGAUCCACAGCCACAGAACGGGCGCUCGAUCAGCAAGCGGGGCGUGAGCUGUCAGUUUGGGCCUGACGUCACCAAGGCCUUCUUGGAAGAGAACAACCUGGACUAUAUCAYCCGCAGCCACGAAGUCAAGGCCGAGGGCUACGAGGUGGCUCACGGAGGCCGCUGUGUCACCGUCUUCUCUGCCCCCAACUACUGCGACCAGAUGGGGAACAAAGCCUCCUACAYCCACCYCCAGGGCUCUGACCUACGGCCUCAGUUCCACCAGUUCACAGCAGUGCCUCAYCCCAACGUCAAGCCCAUGGCCUAUGCCAACACGCUGCUGCAGCUAGGAAUGAUGUGAGGUGACGGGCGGGGCGGCCUGCAUCCCAGGGCCCCUCCAAUCCCACCGGACCCAGGCCCUGGGCUAGGGGCAGAGCAGGCCCCGCCCCAGGGCAAUGUUGGACCCCCUUUUACUUUGUAAAGUUUGUAUUUAUUCCCCUYUAGGUUUGCAGAGGGGGUAGGGGCAGAGUCAGGGGCUGGCCAGAGGGUCUGCUCCCUGGACAGAGAGGAAGGAGGUGGAGCAGCUGGGGCUGGGGGCACAGCCUGGGCAUUCUGUGGGGAGGCCGUCCUCGGGGUGGGGUGGGGCCGAGUGGCUGCCCUGCCCCCCUCAUUUGCAUGGCUCCUCCCCCACUCAAGCAAUAGGGCCCCGCCAUAGGAAGACCCCCAGAGAGAGGGUCAGCAGGGGGGCCCCGCCUGCGCCUCCCCYCCUAUAGCCCCAUGGUGGGGCUAGGCUGGGGCUCACCCCCCUCCCCAGCUAUUUUAUGUCUGUAAUUAAAUAUGUUAAAAUAAAGUCAUUAUCGGAAGUCAGCUUGUCUCUGGAUGGUGGAGCCGAAGGAGCUGCCCGGGUUGGGUUACGCCUGCUCAGGAGAUCCGGAGGGUGGGGAGGCCGCAAAGUCCCGCUGGCCGGGCCCACCCAGCUCUGGGCUGACC
Sequence (MODOMICS CODE ENCODING) GCUUUGCGGCAUGGCGAUGGCGGAGGGCGAGAGG2000000006ACUGAGUGUGCUGAGCCCCCCCGGGACGAACCCCCGGCUGAUGGAGCUCUGAAGCGGGCAGAGGAGCUCAAGACUCAGGCCAAUGACUACUUCAAAGCCAAGGACUACGAGAACGCCAUCAAGUUCUACAGCCAGGCCAUCGAGCUGAACCCCAGCAAUGCCAUCUACUAUGGCAACCGCAGCCUGGCCUACCUGCGCACUGAGUGCUAUGGCUACGCGCUGGGAGACGCCACGCGGGCCAUUGAGCUGGACAAGAAGUACAUCAAGGGUUAUUACCGCCGGGCUGCCAGCAACAUGGCACUGGGCAAGUUCCGGGCCGCGCUGCGAGACUACGAGACGGUGGUCAAGGUGAAGCCCCAUGACAAGGAUGCCAAAAUGAAAUACCAGGAGUGCAACAAGAUCGUGAAGCAGAAGGCCUUUGAGCGGGCCAUCGCGGGCGACGAGCACAAGCGCUCCGUGGUGGACUCGCUGGACAUCGAGAGCAUGACCAUUGAGGAUGAGUACAGCGGACCCAAGCUUGAAGACGGCAAAGUGACAAUCAGUUUCAUGAAGGAGCUCAUGCAGUGGUACAAGGACCAGAAGAAACUGCACCGGAAAUGUGCCUACCAGAUUCUGGUACAGGUCAAAGAGGUCCUCUCCAAGCUGAGCACGCUCGUGGAAACCACACUCAAAGAGACAGAGAAGAUUACAGUAUGUGGGGACACCCAUGGCCAGUUCUAUGACCUCCUCAACAUAUUCGAGCUCAACGGUUUACCCUCGGAG2000000006ACCAACCCCUAUAUAUUUAAUGGUGACUUUGUGGACCGAGGCUCCUUCUCUGUAGAAGUGAUCCUCACCCUUUUCGGCUUCAAGCUCCUGUACCCAGAUCACUUUCACCUCCUUCGAGGCAACCACGAGACAG2000000006ACAACAUGAACCAGAUCUACGGUUUCGAGGGUGAGGUGAAGGCCAAGUACACAGCCCAGAUGUACGAGCUCU2000000009UUAGCGAGGUGUUCGAGUGGCUCCCGUUGGCCCAGUGCAUCAACGGCAAAGUGCUGAUCAUGCACGGAGGCCUGUUCAGUGAAGACGGUGUCACCCUGGAUGACA2000000009UCCGGAAAAUUGAGCGGAAUCGACAACCCCCAGAUUCAGGGCCCAUGUGUGACCUGCUCUGGUCAGAUCCACAGCCACAGAACGGGCGCUCGAUCAGCAAGCGGGGCGUGAGCUGUCAGUUUGGGCCUGACGUCACCAAGGCCUUCUUGGAAGAGAACAACCUGGACUAUAUCA2000000009UCCGCAGCCACGAAGUCAAGGCCGAGGGCUACGAGGUGGCUCACGGAGGCCGCUGUGUCACCGUCUUCUCUGCCCCCAACUACUGCGACCAGAUGGGGAACAAAGCCUCCUACA2000000009UCCACC2000000009UCCAGGGCUCUGACCUACGGCCUCAGUUCCACCAGUUCACAGCAGUGCCUCA2000000009UCCCAACGUCAAGCCCAUGGCCUAUGCCAACACGCUGCUGCAGCUAGGAAUGAUGUGAGGUGACGGGCGGGGCGGCCUGCAUCCCAGGGCCCCUCCAAUCCCACCGGACCCAGGCCCUGGGCUAGGGGCAGAGCAGGCCCCGCCCCAGGGCAAUGUUGGACCCCCUUUUACUUUGUAAAGUUUGUAUUUAUUCCCCU2000000009UUAGGUUUGCAGAGGGGGUAGGGGCAGAGUCAGGGGCUGGCCAGAGGGUCUGCUCCCUGGACAGAGAGGAAGGAGGUGGAGCAGCUGGGGCUGGGGGCACAGCCUGGGCAUUCUGUGGGGAGGCCGUCCUCGGGGUGGGGUGGGGCCGAGUGGCUGCCCUGCCCCCCUCAUUUGCAUGGCUCCUCCCCCACUCAAGCAAUAGGGCCCCGCCAUAGGAAGACCCCCAGAGAGAGGGUCAGCAGGGGGGCCCCGCCUGCGCCUCCCC2000000009UCCUAUAGCCCCAUGGUGGGGCUAGGCUGGGGCUCACCCCCCUCCCCAGCUAUUUUAUGUCUGUAAUUAAAUAUGUUAAAAUAAAGUCAUUAUCGGAAGUCAGCUUGUCUCUGGAUGGUGGAGCCGAAGGAGCUGCCCGGGUUGGGUUACGCCUGCUCAGGAGAUCCGGAGGGUGGGGAGGCCGCAAAGUCCCGCUGGCCGGGCCCACCCAGCUCUGGGCUGACC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 35 797 930 1002 1107 1281 1395 1401 1453 1650 1915
Modification Positions m6A m6A m6A Y Y Y Y Y Y Y Y
Genomic Coordinates 19:46347121:+ 19:46383867:+ 19:46387108:+ 19:46387180:+ 19:46387415:+ 19:46388647:+ 19:46390080:+ 19:46390086:+ 19:46390289:+ 19:46390486:+ 19:46390751:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
jNkxUQNx8GRd
QmcpiJ88DBDn
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
8cMbzB4aD5Se
ArijeGVTwYBw
nfCHyrYzE6fB
WiQcrNTGZHPT
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
a7o5Kmjr4Tdp
Yfn77uLS5tv8
8cMbzB4aD5Se
KTLz8piFYdwC
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8