Modomics - A Database of RNA Modifications

General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000670460
Gene ID:	ENSG00000268895
Gene Name:	A1BG-AS1
Sequence (UNICHARACTER ENCODING)	GGCCGCGCCCGCGCCUGCGCCUCAGCCCCGGCUUCAUCUUCCCUGUCUUGUUCCUGGGCGCAGAGGGCUCCUCCGGCGCCGCCGAGCUGCGCCCGCUGCCUUCACACCCCGGACAUCCGCGCCACACUGAUGGAUCCUAGAACCUGUUCUAGAAGGAGACGCUGAGUUCUCCCCACUCUACCUGGAGCUGCUGAGGUCAAGUGGAGAGUGCCGGGGCUGAAGCCCAGCGAGCCCCUCCCUGUCACACCACACUGCACAUGUGACACCAAAGGUGGGGUUCACCUCUUUUCAGЖCUUUCUGCGGUUGCCCUCACAUGGGCUGUCUGGAGGUGCACCCUCACUCUUCCUGAGGЖCUGUGGUUCCUUCUCCAUCACUGGUUCAUUCUGCAUGGUGUGACCCACCACGGCUCUGGAGUCGGAUUUCCACCCAGGUCAUUCAGCUGAGACCUGCGCUUCCCAGGCCUACCCGUGЖCAUGUGCUCAGUUACCUGAGCUGCUGGUGGUCACUCAUGUGGCUAUAGCCUGCUGCCUGGAGGCCAGGCCUCCCGCUUCCCCUGCCUCCCCCUCUCCUCACCACAGCCUGUUGGGAUGGAACAGGACAGGGGUGAGACCGUGGUGCUUUCACACUCAGCCUCCAUGGЖCAUCCUGUCAUUCCCACCCGGGGAGGUCUGGUCCCCACCCUGGGUGUCCCAGCCUAGCUCCGCUACGAGUGUGAGGGCCCAGGGCAACCGCCUAGCCCUCAUCUGCCCCCUGCACUGCAUCCUCCCCACUCAUUCAUUCCACAGGCAUUUAUUGAGCAUCUACUGUGUGCCAGAUGCAAAGAAGЖCAGUGGGAUAACUGGGCAAGGAGCAUUCCAGGCAGAGGGAACAGCCAGUGCAAACAUGGGAGAUGCGGGUGCAGUGAGAAGGAGCAGAGGAGACCAGGAGUUGAGGCGACUGCAGAGCGAUUGCAGAGCUCAUAGACGUGAUGAAGACCAGCUGGGCACUGCAGCGGCUCUGGCUUCUGCUGUGAGGGACGGGGAGCUGUGGAGACUCCCUCUGUUUGGUCCCAUUUCCAUAUUGCUGAGCACCUGCUGCAUGCUCUCUGUCCUGCUCAGAGCCAGUACCUGGAUGGAGGCUGUGUGUUCUGGGUGGЖCUGGGGGAGAAUGCAUUCUUUGCAGAAGAGACAACCAGGUGCUGAGGCCUGAAGUCAUAACCAGACCUGGGGCACUCAGACAAGGЖCUGGUGGCCAGGCCAGAGGAGCAGAGCUCAGGGUGUGCACAGAACUCAGAAGUCAGACCACUGAACAGUGACAGAЖCCUUUCAGCCCAUUGGCAAUGAGGCUGCCCAGGCAGCCAGAGGCCUGGUCAAAUCUGAGGUCUGCAGAGAUGGAGCUGUCAUUCUGUGUUUCCUUUGGCAGUCCCAACACCAGCCUCGUUGCACCCUCCUCUUAGCUUCCCUGGGUUCUCCAGCCCUAAGGGUGGUAGCAGCUUCCUGCAAGUAUCCAGCUCUGAGAUUCUGCAACAUCCACUUUUGCUCUCUGAGCCUUGCAAAACCUGCACAAUCAGUCCCUAACUUAUAUCCCCUCUGUUUGAAAUACCUAGUGUGGUUUCUAUUUCCUGACUUGЖCUCUGACUGGUGUGGUACUUGGUAUAAAGAAGGUUCCCUGGCCAGGUGCGGUGGCUCACGCCUAUAAUCCCAACGCUUUGGGAGGCUGAGGCAGGAGGAUCACUUGAGCCCAGGAGUUUUGAGACCCGCCUAGGCAACAUGGUGAGACACUGUCCUUACAAAAAAUUUUAAAAUUAGCCAGGUGUAGUGACGCAAGUCUGUCAUCCCAGCUGCUUGGGAGGCUGAGGUGGGAGGAUCACCUGAGCCUAAGAAGUCGCGGCUGCAAUA
Sequence (SHORT NAMES ENCODING)	GGCCGCGCCCGCGCCUGCGCCUCAGCCCCGGCUUCAUCUUCCCUGUCUUGUUCCUGGGCGCAGAGGGCUCCUCCGGCGCCGCCGAGCUGCGCCCGCUGCCUUCACACCCCGGACAUCCGCGCCACACUGAUGGAUCCUAGAACCUGUUCUAGAAGGAGACGCUGAGUUCUCCCCACUCUACCUGGAGCUGCUGAGGUCAAGUGGAGAGUGCCGGGGCUGAAGCCCAGCGAGCCCCUCCCUGUCACACCACACUGCACAUGUGACACCAAAGGUGGGGUUCACCUCUUUUCAGm6ACUUUCUGCGGUUGCCCUCACAUGGGCUGUCUGGAGGUGCACCCUCACUCUUCCUGAGGm6ACUGUGGUUCCUUCUCCAUCACUGGUUCAUUCUGCAUGGUGUGACCCACCACGGCUCUGGAGUCGGAUUUCCACCCAGGUCAUUCAGCUGAGACCUGCGCUUCCCAGGCCUACCCGUGm6ACAUGUGCUCAGUUACCUGAGCUGCUGGUGGUCACUCAUGUGGCUAUAGCCUGCUGCCUGGAGGCCAGGCCUCCCGCUUCCCCUGCCUCCCCCUCUCCUCACCACAGCCUGUUGGGAUGGAACAGGACAGGGGUGAGACCGUGGUGCUUUCACACUCAGCCUCCAUGGm6ACAUCCUGUCAUUCCCACCCGGGGAGGUCUGGUCCCCACCCUGGGUGUCCCAGCCUAGCUCCGCUACGAGUGUGAGGGCCCAGGGCAACCGCCUAGCCCUCAUCUGCCCCCUGCACUGCAUCCUCCCCACUCAUUCAUUCCACAGGCAUUUAUUGAGCAUCUACUGUGUGCCAGAUGCAAAGAAGm6ACAGUGGGAUAACUGGGCAAGGAGCAUUCCAGGCAGAGGGAACAGCCAGUGCAAACAUGGGAGAUGCGGGUGCAGUGAGAAGGAGCAGAGGAGACCAGGAGUUGAGGCGACUGCAGAGCGAUUGCAGAGCUCAUAGACGUGAUGAAGACCAGCUGGGCACUGCAGCGGCUCUGGCUUCUGCUGUGAGGGACGGGGAGCUGUGGAGACUCCCUCUGUUUGGUCCCAUUUCCAUAUUGCUGAGCACCUGCUGCAUGCUCUCUGUCCUGCUCAGAGCCAGUACCUGGAUGGAGGCUGUGUGUUCUGGGUGGm6ACUGGGGGAGAAUGCAUUCUUUGCAGAAGAGACAACCAGGUGCUGAGGCCUGAAGUCAUAACCAGACCUGGGGCACUCAGACAAGGm6ACUGGUGGCCAGGCCAGAGGAGCAGAGCUCAGGGUGUGCACAGAACUCAGAAGUCAGACCACUGAACAGUGACAGAm6ACCUUUCAGCCCAUUGGCAAUGAGGCUGCCCAGGCAGCCAGAGGCCUGGUCAAAUCUGAGGUCUGCAGAGAUGGAGCUGUCAUUCUGUGUUUCCUUUGGCAGUCCCAACACCAGCCUCGUUGCACCCUCCUCUUAGCUUCCCUGGGUUCUCCAGCCCUAAGGGUGGUAGCAGCUUCCUGCAAGUAUCCAGCUCUGAGAUUCUGCAACAUCCACUUUUGCUCUCUGAGCCUUGCAAAACCUGCACAAUCAGUCCCUAACUUAUAUCCCCUCUGUUUGAAAUACCUAGUGUGGUUUCUAUUUCCUGACUUGm6ACUCUGACUGGUGUGGUACUUGGUAUAAAGAAGGUUCCCUGGCCAGGUGCGGUGGCUCACGCCUAUAAUCCCAACGCUUUGGGAGGCUGAGGCAGGAGGAUCACUUGAGCCCAGGAGUUUUGAGACCCGCCUAGGCAACAUGGUGAGACACUGUCCUUACAAAAAAUUUUAAAAUUAGCCAGGUGUAGUGACGCAAGUCUGUCAUCCCAGCUGCUUGGGAGGCUGAGGUGGGAGGAUCACCUGAGCCUAAGAAGUCGCGGCUGCAAUA
Sequence (MODOMICS CODE ENCODING)	GGCCGCGCCCGCGCCUGCGCCUCAGCCCCGGCUUCAUCUUCCCUGUCUUGUUCCUGGGCGCAGAGGGCUCCUCCGGCGCCGCCGAGCUGCGCCCGCUGCCUUCACACCCCGGACAUCCGCGCCACACUGAUGGAUCCUAGAACCUGUUCUAGAAGGAGACGCUGAGUUCUCCCCACUCUACCUGGAGCUGCUGAGGUCAAGUGGAGAGUGCCGGGGCUGAAGCCCAGCGAGCCCCUCCCUGUCACACCACACUGCACAUGUGACACCAAAGGUGGGGUUCACCUCUUUUCAG2000000006ACUUUCUGCGGUUGCCCUCACAUGGGCUGUCUGGAGGUGCACCCUCACUCUUCCUGAGG2000000006ACUGUGGUUCCUUCUCCAUCACUGGUUCAUUCUGCAUGGUGUGACCCACCACGGCUCUGGAGUCGGAUUUCCACCCAGGUCAUUCAGCUGAGACCUGCGCUUCCCAGGCCUACCCGUG2000000006ACAUGUGCUCAGUUACCUGAGCUGCUGGUGGUCACUCAUGUGGCUAUAGCCUGCUGCCUGGAGGCCAGGCCUCCCGCUUCCCCUGCCUCCCCCUCUCCUCACCACAGCCUGUUGGGAUGGAACAGGACAGGGGUGAGACCGUGGUGCUUUCACACUCAGCCUCCAUGG2000000006ACAUCCUGUCAUUCCCACCCGGGGAGGUCUGGUCCCCACCCUGGGUGUCCCAGCCUAGCUCCGCUACGAGUGUGAGGGCCCAGGGCAACCGCCUAGCCCUCAUCUGCCCCCUGCACUGCAUCCUCCCCACUCAUUCAUUCCACAGGCAUUUAUUGAGCAUCUACUGUGUGCCAGAUGCAAAGAAG2000000006ACAGUGGGAUAACUGGGCAAGGAGCAUUCCAGGCAGAGGGAACAGCCAGUGCAAACAUGGGAGAUGCGGGUGCAGUGAGAAGGAGCAGAGGAGACCAGGAGUUGAGGCGACUGCAGAGCGAUUGCAGAGCUCAUAGACGUGAUGAAGACCAGCUGGGCACUGCAGCGGCUCUGGCUUCUGCUGUGAGGGACGGGGAGCUGUGGAGACUCCCUCUGUUUGGUCCCAUUUCCAUAUUGCUGAGCACCUGCUGCAUGCUCUCUGUCCUGCUCAGAGCCAGUACCUGGAUGGAGGCUGUGUGUUCUGGGUGG2000000006ACUGGGGGAGAAUGCAUUCUUUGCAGAAGAGACAACCAGGUGCUGAGGCCUGAAGUCAUAACCAGACCUGGGGCACUCAGACAAGG2000000006ACUGGUGGCCAGGCCAGAGGAGCAGAGCUCAGGGUGUGCACAGAACUCAGAAGUCAGACCACUGAACAGUGACAGA2000000006ACCUUUCAGCCCAUUGGCAAUGAGGCUGCCCAGGCAGCCAGAGGCCUGGUCAAAUCUGAGGUCUGCAGAGAUGGAGCUGUCAUUCUGUGUUUCCUUUGGCAGUCCCAACACCAGCCUCGUUGCACCCUCCUCUUAGCUUCCCUGGGUUCUCCAGCCCUAAGGGUGGUAGCAGCUUCCUGCAAGUAUCCAGCUCUGAGAUUCUGCAACAUCCACUUUUGCUCUCUGAGCCUUGCAAAACCUGCACAAUCAGUCCCUAACUUAUAUCCCCUCUGUUUGAAAUACCUAGUGUGGUUUCUAUUUCCUGACUUG2000000006ACUCUGACUGGUGUGGUACUUGGUAUAAAGAAGGUUCCCUGGCCAGGUGCGGUGGCUCACGCCUAUAAUCCCAACGCUUUGGGAGGCUGAGGCAGGAGGAUCACUUGAGCCCAGGAGUUUUGAGACCCGCCUAGGCAACAUGGUGAGACACUGUCCUUACAAAAAAUUUUAAAAUUAGCCAGGUGUAGUGACGCAAGUCUGUCAUCCCAGCUGCUUGGGAGGCUGAGGUGGGAGGAUCACCUGAGCCUAAGAAGUCGCGGCUGCAAUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and
evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered
as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors
should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected.
Class 4 is considered as questionable. Class 5 evidence means that
verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences.
Edit locations not originally present in the RNA sequences are marked by their source.
Their scores are in third row.}

Position in the Sequence	293	352	470	638	823	1131	1217	1293	1602
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	19:58353879:+	19:58353938:+	19:58354056:+	19:58354224:+	19:58354409:+	19:58354717:+	19:58354803:+	19:58354879:+	19:58355188:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL