Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000618220
Gene ID: ENSG00000005206
Gene Name: SPPL2B
Sequence (UNICHARACTER ENCODING) GGGCACCGGCCGACAUGGCGGCAGCGGUGGCGGCUGCGCUGGCGCGGCUUUUGGCGGCCUUUCUGCUCCUCGCGGCCCAGGUGGCCUGUGAGUACGGCAUGGUGCACGUGGUCUCCCAGGCCGGGGGCCCCGAAGGCAAAGACUACUGCAUCCUCUACAACCCGCAGUGGGCCCAUCUUCCGCACGACCUCAGCAAGGCAUCUUUCCUGCAGCUGCGCAACUGGACGGCCUCCCUGCUCUGCUCCGCAGCCGACCUCCCCGCCCGUGGCUUCAGCAACCAGAUCCCGCUGGUGGCGCGGGGGAACUGCACCUUCUAUGAGAAAGUGAGGCUGGCCCAGGGCAGCGGAGCACGCGGGCUGCUCAUCGUCAGCAGGGAGAGGCUGGUCCCCCCGGGGGGUAAUAAGACGCAGUAUGAUGAGAUUGGCAUUCCCGUGGCCCUGCUCAGCUACAAAGACAUGCUGGACAUCUUCACGCGUUUCGGCCGCACGGUGAGGGCGGCGCUGUAUGCGCCUAAGGAGCCGGUGCUGGACUACAACAUGGUCAUCAUCUUCAUCAUGGCUGUGGGCACCGUCGCCAUCGGCGGCUACUGGGCCGGGAGUCGGGACGUGAAGAAAAGGUACAUGAAGCACAAGCGCGACGAUGGGCCCGAGAAGCAGGAGGACGAGGCGGUGGACGUGACGCCGGUGAUGACCUGCGUGUUUGUGGUGAUGUGCUGCUCCAUGCUGGUGCUGCUCUACUAUUUCUACGAUCUCCUCGUGUACGUGGUCAUCGGGAUCUUCUGCCUGGCCUCCGCCACCGGCCUCUACAGCUGCCUGGCGCCCUGUGUGCGGCGGCUGCCCUUCGGCAAGUGCAGGAUCCCCAACAACAGCCUGCCCUACUUCCACAAGCGCCCGCAGGCCCGUAUGCUGCUCCUGGCGCUCUUCUGCGUGGCCGUCAGCGUGGUGUGGGGCGUCUUCCGCAACGAGGACCAGUAAGUGCUGCUUCCCCCGGGCCCCGGCGGGCAGCGGAGUCCUCGGGUGCACCAGGGCUCCUGGGGCCCUGACUCCCUGCCCUCCCUGGAGGCCGCCCCAGCCUGGAGCUGCUUCAGCACCGCGUGAUGAAGAGCCCUGGCCCCGGGCUGCUCUGACAGGGCUGCGAGGGCGUUUCACCUGGGGUUUGUCCGGGUGUCAUGGGAACCCUGACUGGAAUCCGGGAGGAGAGGCCGGAGCCCCUGUGGCCAGGAGCCACGUCCUCCAGCCUGGAUGGGЖCUCCUUUGUGGGGCAUCGCUGCCCAGGGCCACAGUCUGUCCCCCGCUGUCCCUUUCCUGGCACCCACGUGCACGCCGCAGGUUCGAGGCCCAGGGUGUGGGCACCAGGGCACCCGGUCCUCUUGGUCAUGЖCUGCUGCGGCUUCUGAGCAGUGGUGGAGGUGGGGCAGGCACUGCUCCCCCCACGCUCACCUCCCACGUGGCCUGGЖCUUGUGGCUGCCUCCCGCUGGCCGGGCCUCCCCCAUGAGGCCGAGUGCCUGGUGCCGUGUUGGGAGGЖCAGAGCUGGCCCGUCCCCGCCCGGUCCCCACCGCUGUCGCUGAUACCAUCUGGCACUUCCUCCCAGCCUUCCUGAGGCAGCCAAGUACGCUUGGCUUUGGUGUGUAUUGGAGCCACGGCACGUUUAACUGGCAGAAGGAAGAUGUGAAAAUAUUUUGAAUCCUUUGUACACAAAGAGAAAAUGAAUCUUUUCAGUUAUUUCCAAGCCAGGAAACUCGCUCCGUCACAUGAAGUUAGAGCAGGCCUCAGUCAGCUGGGCGCAGGGGCUCACGCCUGGGAUCCCAGCAUUUGGUAGGCCAAGGCAGGЖCGAUCACUUUGCCCAGGAGUUCAAGACCAGCCUGGGCAACAAGCGAGACGCCCUAUUUAAGAAAUAAUAUAAAAUCAGAAAAAAUAЖCUGGCCGCAGUUCUCUGGGUGCUUGAAGUACGUGGCGCCUGGAAUUGGCUGUACCAGCGUCUCCCAUGGAGGCCUCUGCUGUUAGCAGCCGCCCCGCCCUGGAGAUGUUUUUAUCCCAUUUUCAAAUGAAGCCUUUGAUGUUUGAGACGCUGAGGAЖCGCUGGGGAACUCGUCCAGCAAGUGACAGGCAGAGCCUGCAUUGGGGGCAGGGGCCAGCGGGGAGGGGЖCUCUGGGGCUUCGUGGGGCCAGGAGAGAGCCGAAGUUGCGGCUGGCUGCAGGGGCCGUGGCCUUGUGCAGGAGGCAGUUCUGUGCUUUGCCCCAGGGCACCAACCGCAUGGCAGCCCCACCCACUGUGGЖCCCAGAGGUUCUUUGAGGAAACCUGGUGUGGCACAAGUUUUAAUUUAAUAAЖCAGUUUGGGCACGGGGGCUCAUGCCUGUAAUCCCAGCЖCUUUGGGAGGUGAGGCGGGCAGAUCACUUGAGGUCAGGAGUUUGAGACCAGCCUGGCCAACAUGACAAAACCCCAUCUCUACUAAAAAUACAAAAAAA
Sequence (SHORT NAMES ENCODING) GGGCACCGGCCGACAUGGCGGCAGCGGUGGCGGCUGCGCUGGCGCGGCUUUUGGCGGCCUUUCUGCUCCUCGCGGCCCAGGUGGCCUGUGAGUACGGCAUGGUGCACGUGGUCUCCCAGGCCGGGGGCCCCGAAGGCAAAGACUACUGCAUCCUCUACAACCCGCAGUGGGCCCAUCUUCCGCACGACCUCAGCAAGGCAUCUUUCCUGCAGCUGCGCAACUGGACGGCCUCCCUGCUCUGCUCCGCAGCCGACCUCCCCGCCCGUGGCUUCAGCAACCAGAUCCCGCUGGUGGCGCGGGGGAACUGCACCUUCUAUGAGAAAGUGAGGCUGGCCCAGGGCAGCGGAGCACGCGGGCUGCUCAUCGUCAGCAGGGAGAGGCUGGUCCCCCCGGGGGGUAAUAAGACGCAGUAUGAUGAGAUUGGCAUUCCCGUGGCCCUGCUCAGCUACAAAGACAUGCUGGACAUCUUCACGCGUUUCGGCCGCACGGUGAGGGCGGCGCUGUAUGCGCCUAAGGAGCCGGUGCUGGACUACAACAUGGUCAUCAUCUUCAUCAUGGCUGUGGGCACCGUCGCCAUCGGCGGCUACUGGGCCGGGAGUCGGGACGUGAAGAAAAGGUACAUGAAGCACAAGCGCGACGAUGGGCCCGAGAAGCAGGAGGACGAGGCGGUGGACGUGACGCCGGUGAUGACCUGCGUGUUUGUGGUGAUGUGCUGCUCCAUGCUGGUGCUGCUCUACUAUUUCUACGAUCUCCUCGUGUACGUGGUCAUCGGGAUCUUCUGCCUGGCCUCCGCCACCGGCCUCUACAGCUGCCUGGCGCCCUGUGUGCGGCGGCUGCCCUUCGGCAAGUGCAGGAUCCCCAACAACAGCCUGCCCUACUUCCACAAGCGCCCGCAGGCCCGUAUGCUGCUCCUGGCGCUCUUCUGCGUGGCCGUCAGCGUGGUGUGGGGCGUCUUCCGCAACGAGGACCAGUAAGUGCUGCUUCCCCCGGGCCCCGGCGGGCAGCGGAGUCCUCGGGUGCACCAGGGCUCCUGGGGCCCUGACUCCCUGCCCUCCCUGGAGGCCGCCCCAGCCUGGAGCUGCUUCAGCACCGCGUGAUGAAGAGCCCUGGCCCCGGGCUGCUCUGACAGGGCUGCGAGGGCGUUUCACCUGGGGUUUGUCCGGGUGUCAUGGGAACCCUGACUGGAAUCCGGGAGGAGAGGCCGGAGCCCCUGUGGCCAGGAGCCACGUCCUCCAGCCUGGAUGGGm6ACUCCUUUGUGGGGCAUCGCUGCCCAGGGCCACAGUCUGUCCCCCGCUGUCCCUUUCCUGGCACCCACGUGCACGCCGCAGGUUCGAGGCCCAGGGUGUGGGCACCAGGGCACCCGGUCCUCUUGGUCAUGm6ACUGCUGCGGCUUCUGAGCAGUGGUGGAGGUGGGGCAGGCACUGCUCCCCCCACGCUCACCUCCCACGUGGCCUGGm6ACUUGUGGCUGCCUCCCGCUGGCCGGGCCUCCCCCAUGAGGCCGAGUGCCUGGUGCCGUGUUGGGAGGm6ACAGAGCUGGCCCGUCCCCGCCCGGUCCCCACCGCUGUCGCUGAUACCAUCUGGCACUUCCUCCCAGCCUUCCUGAGGCAGCCAAGUACGCUUGGCUUUGGUGUGUAUUGGAGCCACGGCACGUUUAACUGGCAGAAGGAAGAUGUGAAAAUAUUUUGAAUCCUUUGUACACAAAGAGAAAAUGAAUCUUUUCAGUUAUUUCCAAGCCAGGAAACUCGCUCCGUCACAUGAAGUUAGAGCAGGCCUCAGUCAGCUGGGCGCAGGGGCUCACGCCUGGGAUCCCAGCAUUUGGUAGGCCAAGGCAGGm6ACGAUCACUUUGCCCAGGAGUUCAAGACCAGCCUGGGCAACAAGCGAGACGCCCUAUUUAAGAAAUAAUAUAAAAUCAGAAAAAAUAm6ACUGGCCGCAGUUCUCUGGGUGCUUGAAGUACGUGGCGCCUGGAAUUGGCUGUACCAGCGUCUCCCAUGGAGGCCUCUGCUGUUAGCAGCCGCCCCGCCCUGGAGAUGUUUUUAUCCCAUUUUCAAAUGAAGCCUUUGAUGUUUGAGACGCUGAGGAm6ACGCUGGGGAACUCGUCCAGCAAGUGACAGGCAGAGCCUGCAUUGGGGGCAGGGGCCAGCGGGGAGGGGm6ACUCUGGGGCUUCGUGGGGCCAGGAGAGAGCCGAAGUUGCGGCUGGCUGCAGGGGCCGUGGCCUUGUGCAGGAGGCAGUUCUGUGCUUUGCCCCAGGGCACCAACCGCAUGGCAGCCCCACCCACUGUGGm6ACCCAGAGGUUCUUUGAGGAAACCUGGUGUGGCACAAGUUUUAAUUUAAUAAm6ACAGUUUGGGCACGGGGGCUCAUGCCUGUAAUCCCAGCm6ACUUUGGGAGGUGAGGCGGGCAGAUCACUUGAGGUCAGGAGUUUGAGACCAGCCUGGCCAACAUGACAAAACCCCAUCUCUACUAAAAAUACAAAAAAA
Sequence (MODOMICS CODE ENCODING) GGGCACCGGCCGACAUGGCGGCAGCGGUGGCGGCUGCGCUGGCGCGGCUUUUGGCGGCCUUUCUGCUCCUCGCGGCCCAGGUGGCCUGUGAGUACGGCAUGGUGCACGUGGUCUCCCAGGCCGGGGGCCCCGAAGGCAAAGACUACUGCAUCCUCUACAACCCGCAGUGGGCCCAUCUUCCGCACGACCUCAGCAAGGCAUCUUUCCUGCAGCUGCGCAACUGGACGGCCUCCCUGCUCUGCUCCGCAGCCGACCUCCCCGCCCGUGGCUUCAGCAACCAGAUCCCGCUGGUGGCGCGGGGGAACUGCACCUUCUAUGAGAAAGUGAGGCUGGCCCAGGGCAGCGGAGCACGCGGGCUGCUCAUCGUCAGCAGGGAGAGGCUGGUCCCCCCGGGGGGUAAUAAGACGCAGUAUGAUGAGAUUGGCAUUCCCGUGGCCCUGCUCAGCUACAAAGACAUGCUGGACAUCUUCACGCGUUUCGGCCGCACGGUGAGGGCGGCGCUGUAUGCGCCUAAGGAGCCGGUGCUGGACUACAACAUGGUCAUCAUCUUCAUCAUGGCUGUGGGCACCGUCGCCAUCGGCGGCUACUGGGCCGGGAGUCGGGACGUGAAGAAAAGGUACAUGAAGCACAAGCGCGACGAUGGGCCCGAGAAGCAGGAGGACGAGGCGGUGGACGUGACGCCGGUGAUGACCUGCGUGUUUGUGGUGAUGUGCUGCUCCAUGCUGGUGCUGCUCUACUAUUUCUACGAUCUCCUCGUGUACGUGGUCAUCGGGAUCUUCUGCCUGGCCUCCGCCACCGGCCUCUACAGCUGCCUGGCGCCCUGUGUGCGGCGGCUGCCCUUCGGCAAGUGCAGGAUCCCCAACAACAGCCUGCCCUACUUCCACAAGCGCCCGCAGGCCCGUAUGCUGCUCCUGGCGCUCUUCUGCGUGGCCGUCAGCGUGGUGUGGGGCGUCUUCCGCAACGAGGACCAGUAAGUGCUGCUUCCCCCGGGCCCCGGCGGGCAGCGGAGUCCUCGGGUGCACCAGGGCUCCUGGGGCCCUGACUCCCUGCCCUCCCUGGAGGCCGCCCCAGCCUGGAGCUGCUUCAGCACCGCGUGAUGAAGAGCCCUGGCCCCGGGCUGCUCUGACAGGGCUGCGAGGGCGUUUCACCUGGGGUUUGUCCGGGUGUCAUGGGAACCCUGACUGGAAUCCGGGAGGAGAGGCCGGAGCCCCUGUGGCCAGGAGCCACGUCCUCCAGCCUGGAUGGG2000000006ACUCCUUUGUGGGGCAUCGCUGCCCAGGGCCACAGUCUGUCCCCCGCUGUCCCUUUCCUGGCACCCACGUGCACGCCGCAGGUUCGAGGCCCAGGGUGUGGGCACCAGGGCACCCGGUCCUCUUGGUCAUG2000000006ACUGCUGCGGCUUCUGAGCAGUGGUGGAGGUGGGGCAGGCACUGCUCCCCCCACGCUCACCUCCCACGUGGCCUGG2000000006ACUUGUGGCUGCCUCCCGCUGGCCGGGCCUCCCCCAUGAGGCCGAGUGCCUGGUGCCGUGUUGGGAGG2000000006ACAGAGCUGGCCCGUCCCCGCCCGGUCCCCACCGCUGUCGCUGAUACCAUCUGGCACUUCCUCCCAGCCUUCCUGAGGCAGCCAAGUACGCUUGGCUUUGGUGUGUAUUGGAGCCACGGCACGUUUAACUGGCAGAAGGAAGAUGUGAAAAUAUUUUGAAUCCUUUGUACACAAAGAGAAAAUGAAUCUUUUCAGUUAUUUCCAAGCCAGGAAACUCGCUCCGUCACAUGAAGUUAGAGCAGGCCUCAGUCAGCUGGGCGCAGGGGCUCACGCCUGGGAUCCCAGCAUUUGGUAGGCCAAGGCAGG2000000006ACGAUCACUUUGCCCAGGAGUUCAAGACCAGCCUGGGCAACAAGCGAGACGCCCUAUUUAAGAAAUAAUAUAAAAUCAGAAAAAAUA2000000006ACUGGCCGCAGUUCUCUGGGUGCUUGAAGUACGUGGCGCCUGGAAUUGGCUGUACCAGCGUCUCCCAUGGAGGCCUCUGCUGUUAGCAGCCGCCCCGCCCUGGAGAUGUUUUUAUCCCAUUUUCAAAUGAAGCCUUUGAUGUUUGAGACGCUGAGGA2000000006ACGCUGGGGAACUCGUCCAGCAAGUGACAGGCAGAGCCUGCAUUGGGGGCAGGGGCCAGCGGGGAGGGG2000000006ACUCUGGGGCUUCGUGGGGCCAGGAGAGAGCCGAAGUUGCGGCUGGCUGCAGGGGCCGUGGCCUUGUGCAGGAGGCAGUUCUGUGCUUUGCCCCAGGGCACCAACCGCAUGGCAGCCCCACCCACUGUGG2000000006ACCCAGAGGUUCUUUGAGGAAACCUGGUGUGGCACAAGUUUUAAUUUAAUAA2000000006ACAGUUUGGGCACGGGGGCUCAUGCCUGUAAUCCCAGC2000000006ACUUUGGGAGGUGAGGCGGGCAGAUCACUUGAGGUCAGGAGUUUGAGACCAGCCUGGCCAACAUGACAAAACCCCAUCUCUACUAAAAAUACAAAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1247 1378 1454 1522 1828 1915 2072 2141 2271 2323 2361
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 19:2341291:+ 19:2341422:+ 19:2341498:+ 19:2341566:+ 19:2341872:+ 19:2341959:+ 19:2342116:+ 19:2342185:+ 19:2342315:+ 19:2342367:+ 19:2342405:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
4HMi5ykupT9V
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
3TeAZFYFxgvp
6UuHp6YApVKv
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
3TeAZFYFxgvp
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
4HMi5ykupT9V
5aTkEfEpX8Xm
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9