Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000652231
Gene ID: ENSG00000118046
Gene Name: STK11
Sequence (UNICHARACTER ENCODING) GGGGGGCGCCCAGUGCGGGCCCUCGCGGGCGCCGGGCAGCGACCAGCCCUGAGCGGAGCUGUUGGCCGCGGCGGGAGGCCUCCCGGACGCCCCCAGCCCCCCGAACGCUCGCCCGGGCCGGCGGGAGUCGGCGCCCCCCGGGAGGUCCGCUCGGUCGUCCGCGGCGGAGCGUUUGCUCCUGGGЖCAGGCGGPGGGACCGGGGCGUCGCCGGAGACGCCCCCAGCGAAGUUGGGCUCUCCAGGUGUGGGGGUCCCGGGGGGUAGCGACGUCGCGGACCCGGCCUGUGGGAUGGGCGGCCCGGAGAAGЖCUGCGCUCGGCCGUGUUCAUACUUGUCCGUGGGCCUGAGGUCCCCGGAGGAUGACCUAGCACUGAAAAGCCCCGGCCGGCCUCCCCAGGGUCCCCGAGGACGAAGUUGACCCUGACCGGGCCGUCUCCCAGUUCUGAGGCCCGGGUCCCACUGGAЖCUCGCGUCUGAGCCGCCGUCCCGGACCCCCGGUGCCCGCCGGUCCGCAGЖCCCUGCACCGGGCUUGGЖCUCGCAGCCGGGЖCUGACGUGUAGAЖCAAUCGUUUCUGUUGGAAGAAGGGUUUUUCCCUUCCUUUUGGGGUUUUUGUUGCCUUUUUUUUUUCUUUUUUCUUUGUAAAAUUUUGGAGAAGGGAAGUCGGAACACAAGGAAGGACCGCUCACCCGCGGЖCUCAGGGCUGGCGGCGGGЖCUCCAGGACCCUGGGUCCAGCAUGGAGGUGGUGGACCCGCAGCAGCUGGGCAUGUUCACGGAGGGCGAGCUGAUGUCGGUGGGUAUGGЖCACGUUCAPCCACCGCAUCGACUCCACCGAGGUCAUCUACCAGCCGCGCCGCAAGCGGGCCAAGCUCAUCGGCAAGUACCUGAUGGGGGACCUGCUGGGGGAAGGCUCUUACGGCAAGGUGAAGGAGGUGCUGGЖCUCGGAGACGCUGUGCAGGAGGGCCGUCAAGAUCCUCAAGAAGAAGAAGUUGCGAAGGAUCCCCAACGGGGAGGCCAACGUGAAGAAGGAAAUUCAACUACUGAGGAGGUUACGGCACAAAAAUGUCAPCCAGCUGGUGGAUGUGUUAUACAACGAAGAGAAGCAGAAAAUGUAUAUGGUGAUGGAGUACUGCGUGUGUGGCAUGCAGGAAAUGCUGGACAGCGUGCCGGAGAAGCGUUUCCCAGUGUGCCAGGCCCACGGGUACUUCUGUCAGCUGAUUGACGGCCUGGAGUACCUGCAUAGCCAGGGCAUUGUGCACAAGGACAUCAAGCCGGGGAACCUGCUGCUCACCACCGGUGGCACCCUCAAAAUCUCCGACCUGGGCGUGGCCGAGGCACUGCACCCGUUCGCGGCGGACGACACCUGCCGGACCAGCCAGGGCUCCCCGGCUUUCCAGCCGCCCGAGAUUGCCAACGGCCUGGACACCUUCUCCGGCUUCAAGGUGGACAUCUGGUCGGCUGGGGUCACCCUCUACAACAUCACCACGGGUCUGUACCCCUUCGAAGGGGACAACAUCUACЖAGUUGUUUGAGAACAUCGGGAAGGGGAGCUACGCCAUCCCGGGCGACUGUGGCCCCCCGCUCUCUGACCUGCUGAAAGGGAUGCUUGAGUACGAACCGGCCAAGAGGUUCUCCAPCCGGCAGAUCCGGCAGCACAGCUGGUUCCGGAAGAAACAPCCPCCGGCUGAAGCACCAGUGCCCAUCCCACCGAGCCCAGACACCAAGGACCGGUGGCGCAGCAUGACUGUGGUGCCGUACUUGGAGGACCUGCACGGCGCGGACGAGGACGAGGACCUCUUCGACAUCGAGGAUGACAUCAUCUACACUCAGGACUUCACGGUGCCCGGUGGCGAGGAGGCGUCUGAGGCAGGGCUUAGAGCGGAGCGCGGCUUGCAGAAGAGCGAGGGCUCAGACCUUUCAGGAGAGGAAGCCUCUCGGCCGGCGCCGCAGUAGUGCCUGAGGAGGAGCUCAGGGCCUUAGCGUAGGGGCGGCCCACAUUGGCAGCCAGCCCCUCCCCGCCAUGCUCCCGGCUUGGCUGUGUUCGGCCCAGGGCUGGGCCGUGUCAUAAAGAGUUUUGCAGUG
Sequence (SHORT NAMES ENCODING) GGGGGGCGCCCAGUGCGGGCCCUCGCGGGCGCCGGGCAGCGACCAGCCCUGAGCGGAGCUGUUGGCCGCGGCGGGAGGCCUCCCGGACGCCCCCAGCCCCCCGAACGCUCGCCCGGGCCGGCGGGAGUCGGCGCCCCCCGGGAGGUCCGCUCGGUCGUCCGCGGCGGAGCGUUUGCUCCUGGGm6ACAGGCGGYGGGACCGGGGCGUCGCCGGAGACGCCCCCAGCGAAGUUGGGCUCUCCAGGUGUGGGGGUCCCGGGGGGUAGCGACGUCGCGGACCCGGCCUGUGGGAUGGGCGGCCCGGAGAAGm6ACUGCGCUCGGCCGUGUUCAUACUUGUCCGUGGGCCUGAGGUCCCCGGAGGAUGACCUAGCACUGAAAAGCCCCGGCCGGCCUCCCCAGGGUCCCCGAGGACGAAGUUGACCCUGACCGGGCCGUCUCCCAGUUCUGAGGCCCGGGUCCCACUGGAm6ACUCGCGUCUGAGCCGCCGUCCCGGACCCCCGGUGCCCGCCGGUCCGCAGm6ACCCUGCACCGGGCUUGGm6ACUCGCAGCCGGGm6ACUGACGUGUAGAm6ACAAUCGUUUCUGUUGGAAGAAGGGUUUUUCCCUUCCUUUUGGGGUUUUUGUUGCCUUUUUUUUUUCUUUUUUCUUUGUAAAAUUUUGGAGAAGGGAAGUCGGAACACAAGGAAGGACCGCUCACCCGCGGm6ACUCAGGGCUGGCGGCGGGm6ACUCCAGGACCCUGGGUCCAGCAUGGAGGUGGUGGACCCGCAGCAGCUGGGCAUGUUCACGGAGGGCGAGCUGAUGUCGGUGGGUAUGGm6ACACGUUCAYCCACCGCAUCGACUCCACCGAGGUCAUCUACCAGCCGCGCCGCAAGCGGGCCAAGCUCAUCGGCAAGUACCUGAUGGGGGACCUGCUGGGGGAAGGCUCUUACGGCAAGGUGAAGGAGGUGCUGGm6ACUCGGAGACGCUGUGCAGGAGGGCCGUCAAGAUCCUCAAGAAGAAGAAGUUGCGAAGGAUCCCCAACGGGGAGGCCAACGUGAAGAAGGAAAUUCAACUACUGAGGAGGUUACGGCACAAAAAUGUCAYCCAGCUGGUGGAUGUGUUAUACAACGAAGAGAAGCAGAAAAUGUAUAUGGUGAUGGAGUACUGCGUGUGUGGCAUGCAGGAAAUGCUGGACAGCGUGCCGGAGAAGCGUUUCCCAGUGUGCCAGGCCCACGGGUACUUCUGUCAGCUGAUUGACGGCCUGGAGUACCUGCAUAGCCAGGGCAUUGUGCACAAGGACAUCAAGCCGGGGAACCUGCUGCUCACCACCGGUGGCACCCUCAAAAUCUCCGACCUGGGCGUGGCCGAGGCACUGCACCCGUUCGCGGCGGACGACACCUGCCGGACCAGCCAGGGCUCCCCGGCUUUCCAGCCGCCCGAGAUUGCCAACGGCCUGGACACCUUCUCCGGCUUCAAGGUGGACAUCUGGUCGGCUGGGGUCACCCUCUACAACAUCACCACGGGUCUGUACCCCUUCGAAGGGGACAACAUCUACm6AAGUUGUUUGAGAACAUCGGGAAGGGGAGCUACGCCAUCCCGGGCGACUGUGGCCCCCCGCUCUCUGACCUGCUGAAAGGGAUGCUUGAGUACGAACCGGCCAAGAGGUUCUCCAYCCGGCAGAUCCGGCAGCACAGCUGGUUCCGGAAGAAACAYCCYCCGGCUGAAGCACCAGUGCCCAUCCCACCGAGCCCAGACACCAAGGACCGGUGGCGCAGCAUGACUGUGGUGCCGUACUUGGAGGACCUGCACGGCGCGGACGAGGACGAGGACCUCUUCGACAUCGAGGAUGACAUCAUCUACACUCAGGACUUCACGGUGCCCGGUGGCGAGGAGGCGUCUGAGGCAGGGCUUAGAGCGGAGCGCGGCUUGCAGAAGAGCGAGGGCUCAGACCUUUCAGGAGAGGAAGCCUCUCGGCCGGCGCCGCAGUAGUGCCUGAGGAGGAGCUCAGGGCCUUAGCGUAGGGGCGGCCCACAUUGGCAGCCAGCCCCUCCCCGCCAUGCUCCCGGCUUGGCUGUGUUCGGCCCAGGGCUGGGCCGUGUCAUAAAGAGUUUUGCAGUG
Sequence (MODOMICS CODE ENCODING) GGGGGGCGCCCAGUGCGGGCCCUCGCGGGCGCCGGGCAGCGACCAGCCCUGAGCGGAGCUGUUGGCCGCGGCGGGAGGCCUCCCGGACGCCCCCAGCCCCCCGAACGCUCGCCCGGGCCGGCGGGAGUCGGCGCCCCCCGGGAGGUCCGCUCGGUCGUCCGCGGCGGAGCGUUUGCUCCUGGG2000000006ACAGGCGG2000000009UGGGACCGGGGCGUCGCCGGAGACGCCCCCAGCGAAGUUGGGCUCUCCAGGUGUGGGGGUCCCGGGGGGUAGCGACGUCGCGGACCCGGCCUGUGGGAUGGGCGGCCCGGAGAAG2000000006ACUGCGCUCGGCCGUGUUCAUACUUGUCCGUGGGCCUGAGGUCCCCGGAGGAUGACCUAGCACUGAAAAGCCCCGGCCGGCCUCCCCAGGGUCCCCGAGGACGAAGUUGACCCUGACCGGGCCGUCUCCCAGUUCUGAGGCCCGGGUCCCACUGGA2000000006ACUCGCGUCUGAGCCGCCGUCCCGGACCCCCGGUGCCCGCCGGUCCGCAG2000000006ACCCUGCACCGGGCUUGG2000000006ACUCGCAGCCGGG2000000006ACUGACGUGUAGA2000000006ACAAUCGUUUCUGUUGGAAGAAGGGUUUUUCCCUUCCUUUUGGGGUUUUUGUUGCCUUUUUUUUUUCUUUUUUCUUUGUAAAAUUUUGGAGAAGGGAAGUCGGAACACAAGGAAGGACCGCUCACCCGCGG2000000006ACUCAGGGCUGGCGGCGGG2000000006ACUCCAGGACCCUGGGUCCAGCAUGGAGGUGGUGGACCCGCAGCAGCUGGGCAUGUUCACGGAGGGCGAGCUGAUGUCGGUGGGUAUGG2000000006ACACGUUCA2000000009UCCACCGCAUCGACUCCACCGAGGUCAUCUACCAGCCGCGCCGCAAGCGGGCCAAGCUCAUCGGCAAGUACCUGAUGGGGGACCUGCUGGGGGAAGGCUCUUACGGCAAGGUGAAGGAGGUGCUGG2000000006ACUCGGAGACGCUGUGCAGGAGGGCCGUCAAGAUCCUCAAGAAGAAGAAGUUGCGAAGGAUCCCCAACGGGGAGGCCAACGUGAAGAAGGAAAUUCAACUACUGAGGAGGUUACGGCACAAAAAUGUCA2000000009UCCAGCUGGUGGAUGUGUUAUACAACGAAGAGAAGCAGAAAAUGUAUAUGGUGAUGGAGUACUGCGUGUGUGGCAUGCAGGAAAUGCUGGACAGCGUGCCGGAGAAGCGUUUCCCAGUGUGCCAGGCCCACGGGUACUUCUGUCAGCUGAUUGACGGCCUGGAGUACCUGCAUAGCCAGGGCAUUGUGCACAAGGACAUCAAGCCGGGGAACCUGCUGCUCACCACCGGUGGCACCCUCAAAAUCUCCGACCUGGGCGUGGCCGAGGCACUGCACCCGUUCGCGGCGGACGACACCUGCCGGACCAGCCAGGGCUCCCCGGCUUUCCAGCCGCCCGAGAUUGCCAACGGCCUGGACACCUUCUCCGGCUUCAAGGUGGACAUCUGGUCGGCUGGGGUCACCCUCUACAACAUCACCACGGGUCUGUACCCCUUCGAAGGGGACAACAUCUAC2000000006AAGUUGUUUGAGAACAUCGGGAAGGGGAGCUACGCCAUCCCGGGCGACUGUGGCCCCCCGCUCUCUGACCUGCUGAAAGGGAUGCUUGAGUACGAACCGGCCAAGAGGUUCUCCA2000000009UCCGGCAGAUCCGGCAGCACAGCUGGUUCCGGAAGAAACA2000000009UCC2000000009UCCGGCUGAAGCACCAGUGCCCAUCCCACCGAGCCCAGACACCAAGGACCGGUGGCGCAGCAUGACUGUGGUGCCGUACUUGGAGGACCUGCACGGCGCGGACGAGGACGAGGACCUCUUCGACAUCGAGGAUGACAUCAUCUACACUCAGGACUUCACGGUGCCCGGUGGCGAGGAGGCGUCUGAGGCAGGGCUUAGAGCGGAGCGCGGCUUGCAGAAGAGCGAGGGCUCAGACCUUUCAGGAGAGGAAGCCUCUCGGCCGGCGCCGCAGUAGUGCCUGAGGAGGAGCUCAGGGCCUUAGCGUAGGGGCGGCCCACAUUGGCAGCCAGCCCCUCCCCGCCAUGCUCCCGGCUUGGCUGUGUUCGGCCCAGGGCUGGGCCGUGUCAUAAAGAGUUUUGCAGUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 184 192 307 463 513 531 544 557 688 707 796 805 931 1060 1512 1627 1667 1670
Modification Positions m6A Y m6A m6A m6A m6A m6A m6A m6A m6A m6A Y m6A Y m6A Y Y Y
Genomic Coordinates 19:1206369:+ 19:1206377:+ 19:1206492:+ 19:1206648:+ 19:1206698:+ 19:1206716:+ 19:1206729:+ 19:1206742:+ 19:1206873:+ 19:1206892:+ 19:1206981:+ 19:1206990:+ 19:1207116:+ 19:1218458:+ 19:1221262:+ 19:1221985:+ 19:1223003:+ 19:1223006:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
BkoLW2CBToyL
nfCHyrYzE6fB
834aFpha8RvT
dA7YoLwHrzgR
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
BkoLW2CBToyL
nfCHyrYzE6fB
WiQcrNTGZHPT
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
ArijeGVTwYBw
nfCHyrYzE6fB
WiQcrNTGZHPT
BtsJQJ3DteUq
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
ArijeGVTwYBw
KTLz8piFYdwC
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
WiQcrNTGZHPT
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8