General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000416728
Gene ID:	ENSG00000006712
Gene Name:	PAF1
Sequence (UNICHARACTER ENCODING)	GUUGGGUCCUCAGCGUCUUGGCGGCAGUUGGUGGAACCGGAGCUUCGAGUCCGUCCCCGGUGCUGCCUGCGCGUUCACCUGAGUCUCGCUGGAGCUCUUCUCGCCCGCCCACCUCAUCUCAACCCACUUUCCGCGGGGAGCGGCGCCAAGCUGGGCCUUCCUCGGAUCAGGCGUCCCCUGAAGUCGGCACGCCCCUCUGCGUCCCCCUUCGGUCCCGCUAGGACCCCGUCCGGGCUGCCGUCGCCUCGUCGCUAUGGCGCCCACCAUCCAGACCCAGGCCCAGCGGGAGGAUGGCCACAGGCCCAAUUCCCACCGGACUCUGCCUGAGAGGUCUGGAGUGGUCUGCCGAGUCAAGUACUGCAAUAGCCUCCCUGAUAUCCCCUUCGACCCCAAGUUCAUCACCUACCCCUUCGACCAGAACAGUUCUUCUAGAUCCAGCUGAUGAGAAACUUUUGGAAGAGGAGAUUCAGGCCCCCACCAGCUCCAAGAGAUCCCAGCAGCACGCGAAGGUGGUGCCAUGGAUGCGAAAGACAGAGUACAUCUCCACUGAGUUCAACCGUUAUGGCAUCUCCAAUGAGAAGCCUGAGGUCAAGAUUGGGGUUUCUGUGAAGCAGCAGUUUACCGAGGAAGAAAUAUACAAAGACAGGGAUAGCCAGAUCACAGCCAUUGAGAAGACUUUUGAGGAUGCCCAGAAAUCAAUCUCACAGCAUUACAGCAAACCCCGAGUCACACCGGUGGAGGUCAUGCCUGUCUUCCCAGACUPUAAGAUGUGGAUCAAUCCAUGUGCUCAGGUGAUCUUUGACUCAGЖCCCAGCCCCCAAGGACACGAGUGGUGCAGCUGCGUUGGAGAUGAUGUCUCAGGCCAUGAUUAGGGGCAUGAUGGAUGAGGAAGGGAACCAGUUUGUGGCCUAUUUCCUGCCUGUAGAAGAGACGUUGAAGAAACGAAAGCGGGACCAGGAGGAGGAGAUGGACUAUGCACCAGAUGAUGUGUAUGACUACAAAAUUGCUCGGGAGUACAACUGGAACGUGAAGAACAAAGCUAGCAAGGGCUAUGAGGAAAACUACUUCUUCAUCUUCCGAGAGGGUGACGGGGUUUACUACAAUGAGUUGGAAACCAGUAUUCAGUACAGUCACAUGCUGUACAACCUUGUAGCCUAGGAGCAAUAGGCUACACCAUUACAGCCUAGGGUCCGCCUUAGUAAGCGCCGGGCCAAGGCUGGGGUUCAGUCAGGCACCAACGCCCUGCUUGUGGUCAAЖCAUCGGGACAUGAAUGAGAAGGAACUGGAAGCUCAGGAGGCACGGAAGGCCCAGCUAGAAAACCACGAЖCCGGAGGAGGAAGAGGAAGAGGAGAUGGAGACAGAAGAGAAAGAAGCUGGGGGCUCAG
Sequence (SHORT NAMES ENCODING)	GUUGGGUCCUCAGCGUCUUGGCGGCAGUUGGUGGAACCGGAGCUUCGAGUCCGUCCCCGGUGCUGCCUGCGCGUUCACCUGAGUCUCGCUGGAGCUCUUCUCGCCCGCCCACCUCAUCUCAACCCACUUUCCGCGGGGAGCGGCGCCAAGCUGGGCCUUCCUCGGAUCAGGCGUCCCCUGAAGUCGGCACGCCCCUCUGCGUCCCCCUUCGGUCCCGCUAGGACCCCGUCCGGGCUGCCGUCGCCUCGUCGCUAUGGCGCCCACCAUCCAGACCCAGGCCCAGCGGGAGGAUGGCCACAGGCCCAAUUCCCACCGGACUCUGCCUGAGAGGUCUGGAGUGGUCUGCCGAGUCAAGUACUGCAAUAGCCUCCCUGAUAUCCCCUUCGACCCCAAGUUCAUCACCUACCCCUUCGACCAGAACAGUUCUUCUAGAUCCAGCUGAUGAGAAACUUUUGGAAGAGGAGAUUCAGGCCCCCACCAGCUCCAAGAGAUCCCAGCAGCACGCGAAGGUGGUGCCAUGGAUGCGAAAGACAGAGUACAUCUCCACUGAGUUCAACCGUUAUGGCAUCUCCAAUGAGAAGCCUGAGGUCAAGAUUGGGGUUUCUGUGAAGCAGCAGUUUACCGAGGAAGAAAUAUACAAAGACAGGGAUAGCCAGAUCACAGCCAUUGAGAAGACUUUUGAGGAUGCCCAGAAAUCAAUCUCACAGCAUUACAGCAAACCCCGAGUCACACCGGUGGAGGUCAUGCCUGUCUUCCCAGACUYUAAGAUGUGGAUCAAUCCAUGUGCUCAGGUGAUCUUUGACUCAGm6ACCCAGCCCCCAAGGACACGAGUGGUGCAGCUGCGUUGGAGAUGAUGUCUCAGGCCAUGAUUAGGGGCAUGAUGGAUGAGGAAGGGAACCAGUUUGUGGCCUAUUUCCUGCCUGUAGAAGAGACGUUGAAGAAACGAAAGCGGGACCAGGAGGAGGAGAUGGACUAUGCACCAGAUGAUGUGUAUGACUACAAAAUUGCUCGGGAGUACAACUGGAACGUGAAGAACAAAGCUAGCAAGGGCUAUGAGGAAAACUACUUCUUCAUCUUCCGAGAGGGUGACGGGGUUUACUACAAUGAGUUGGAAACCAGUAUUCAGUACAGUCACAUGCUGUACAACCUUGUAGCCUAGGAGCAAUAGGCUACACCAUUACAGCCUAGGGUCCGCCUUAGUAAGCGCCGGGCCAAGGCUGGGGUUCAGUCAGGCACCAACGCCCUGCUUGUGGUCAAm6ACAUCGGGACAUGAAUGAGAAGGAACUGGAAGCUCAGGAGGCACGGAAGGCCCAGCUAGAAAACCACGAm6ACCGGAGGAGGAAGAGGAAGAGGAGAUGGAGACAGAAGAGAAAGAAGCUGGGGGCUCAG
Sequence (MODOMICS CODE ENCODING)	GUUGGGUCCUCAGCGUCUUGGCGGCAGUUGGUGGAACCGGAGCUUCGAGUCCGUCCCCGGUGCUGCCUGCGCGUUCACCUGAGUCUCGCUGGAGCUCUUCUCGCCCGCCCACCUCAUCUCAACCCACUUUCCGCGGGGAGCGGCGCCAAGCUGGGCCUUCCUCGGAUCAGGCGUCCCCUGAAGUCGGCACGCCCCUCUGCGUCCCCCUUCGGUCCCGCUAGGACCCCGUCCGGGCUGCCGUCGCCUCGUCGCUAUGGCGCCCACCAUCCAGACCCAGGCCCAGCGGGAGGAUGGCCACAGGCCCAAUUCCCACCGGACUCUGCCUGAGAGGUCUGGAGUGGUCUGCCGAGUCAAGUACUGCAAUAGCCUCCCUGAUAUCCCCUUCGACCCCAAGUUCAUCACCUACCCCUUCGACCAGAACAGUUCUUCUAGAUCCAGCUGAUGAGAAACUUUUGGAAGAGGAGAUUCAGGCCCCCACCAGCUCCAAGAGAUCCCAGCAGCACGCGAAGGUGGUGCCAUGGAUGCGAAAGACAGAGUACAUCUCCACUGAGUUCAACCGUUAUGGCAUCUCCAAUGAGAAGCCUGAGGUCAAGAUUGGGGUUUCUGUGAAGCAGCAGUUUACCGAGGAAGAAAUAUACAAAGACAGGGAUAGCCAGAUCACAGCCAUUGAGAAGACUUUUGAGGAUGCCCAGAAAUCAAUCUCACAGCAUUACAGCAAACCCCGAGUCACACCGGUGGAGGUCAUGCCUGUCUUCCCAGACU2000000009UUAAGAUGUGGAUCAAUCCAUGUGCUCAGGUGAUCUUUGACUCAG2000000006ACCCAGCCCCCAAGGACACGAGUGGUGCAGCUGCGUUGGAGAUGAUGUCUCAGGCCAUGAUUAGGGGCAUGAUGGAUGAGGAAGGGAACCAGUUUGUGGCCUAUUUCCUGCCUGUAGAAGAGACGUUGAAGAAACGAAAGCGGGACCAGGAGGAGGAGAUGGACUAUGCACCAGAUGAUGUGUAUGACUACAAAAUUGCUCGGGAGUACAACUGGAACGUGAAGAACAAAGCUAGCAAGGGCUAUGAGGAAAACUACUUCUUCAUCUUCCGAGAGGGUGACGGGGUUUACUACAAUGAGUUGGAAACCAGUAUUCAGUACAGUCACAUGCUGUACAACCUUGUAGCCUAGGAGCAAUAGGCUACACCAUUACAGCCUAGGGUCCGCCUUAGUAAGCGCCGGGCCAAGGCUGGGGUUCAGUCAGGCACCAACGCCCUGCUUGUGGUCAA2000000006ACAUCGGGACAUGAAUGAGAAGGAACUGGAAGCUCAGGAGGCACGGAAGGCCCAGCUAGAAAACCACGA2000000006ACCGGAGGAGGAAGAGGAAGAGGAGAUGGAGACAGAAGAGAAAGAAGCUGGGGGCUCAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	763	808	1256	1325
Modification Positions	Y	m6A	m6A	m6A
Genomic Coordinates	19:39388951:-	19:39388825:-	19:39386730:-	19:39386540:-
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 Yfn77uLS5tv8	8cMbzB4aD5Se bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8