General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000586417
Gene ID:	ENSG00000130734
Gene Name:	ATG4D
Sequence (UNICHARACTER ENCODING)	UCЖUCCGGGGUCCUGGCCCGCUAAGAUGGCGAUGGCUGCGGUAGCAGCGGCGGCGGCUGUUGCCUGGCCCGGUACCCUGGGGACGGGGGCCGAGUAGCGCCUUCCCCGGGCCCCGUGAACCGGCUGCGGGUCGCCCUUGGGGGGCAGCGGCCGCAGCCCCCCACCUGGGCCCUCGGUCCGCCCUCCCGGCGCGUCCAUGAACUCAGUGUCGCCGGCCGCCGCGCAGUACCGGAGCAGCAGCCCGGAGGACGCGCGCCGCCGGCCCGAGGCCCGCAGGCCGCGGGGUCCCAGAGGCCCAGACCCCAACGGCCUGGGGCCUUCCGGAGCCAGCGGCCCCGCUCUUGGCUCUCCCGGGGCUGGCCCGAGUGAGCCGGACGAAGUGGACAAGUUCAAGGCCAAGUUCCUGACAGCCUGGAACAACGUCAAGUACGAUGGGGGAAUGGAAGCGCUGUUGCUGUCAUGCAAGUGCUUCAUCUCGCUGGGCGCUGCCCCUACGUCUCCCCAGGUUGGGUGGUUAAAAGCCGGACCAGCUPUAGCAAGAUCUCCAGCAUCCACCUCUGUGGCCGCCGCUACCGUUUCGAGGGCGAGGGUGACAUACAGCGUUUCCAGCGGGACUUUGUGUCCCGCCUGUGGCUCACAUACCGCCGGGACUUCCCGCCCCUUCCUGGGGGCUGCCUGACCUCGGACUGUGGCUGGGGGUGCAUGUUACGCAGCGGCCAGAUGAUGCUGGCACAGGGCCUUCUGCUGCAUUUCCUGCCCAGAGACUGGACAUGGGCCGAGGGCAUGGGCCUGGGCCCCCCUGAGCUGUCAGGGUCAGCCUCUCCCAGCCGGUACCAUGGGCCUGCCCGCUGGAUGCCCCCACGCUGGGCCCAGGGUGCCCCUGAGCUGGAGCAGGAACGCCGGCACCGGCAGAUUGUGUCCUGGUUCGCCGACCACCCCCGGGCCCCCUUUGGCCUACACCGGCUGGUGGAGCUUGGGCAGAGCUCAGGCAAGAAGGCAGGUGACUGGUAUGGGCCAUCGCUAGUGGCACACAPCCUCAGGAAAGCCGUGGAGAGCUGCUCCGACGUCACCCGCCUGGUGGUGUACGUUUCUCAGGACUGCACAGUGUACAAGGCGGAUGUGGCACGCCUGGUGGCCAGGCCAGACCCCACAGCCGAGUGGAAGUCUGUGGUCAUCCUGGUGCCCGUGCGACUGGGUGGCGAGACUCUCAACCCCGUGUAUGUGCCCUGCGUGAAGGAACUCCUGCGUUGCGAGCUGUGCCUGGGCAUCAUGGGUGGGAAACCGCGACACUCACUGUACUUCAUUGGCUACCAAGAUGACUUCCUGCUGUACCUGGACCCUCACUACUGCCAGCCCACUGUGGAUGUCAGCCAGGCCGACUUCCCCCUGGAGUCCUUCCACUGCACCUCGCCCCGCAAGAUGGCCUUUGCCAAGAUGGACCCAAGCUGUACCGUGGGCUUCUAUGCUGGAGACAGGAAGGAGUUUGAGACACUCUGCUCAGAGCUGACCAGGGUCCUCAGCUCCUCCUCAGCCACAGAGCGGUACCCCAUGUUCACCCUGGCCGAGGGCCAUGCUCAGGACCACAGCCUGGACGACCUCUGCUCCCAGCUCGCCCAGCCCACACUCCGGCUCCCUCGCACAGGGCGGCUCCUCAGGGCCAAACGCCCCAGCUCUGAGGЖCUUUGUGUUUUUAUAAAGGGAGGGGAUGAGGGGAAAGAUACAACACUAUUUAUUUUUUUAUUUAUGUCAUGUC
Sequence (SHORT NAMES ENCODING)	UCm6AUCCGGGGUCCUGGCCCGCUAAGAUGGCGAUGGCUGCGGUAGCAGCGGCGGCGGCUGUUGCCUGGCCCGGUACCCUGGGGACGGGGGCCGAGUAGCGCCUUCCCCGGGCCCCGUGAACCGGCUGCGGGUCGCCCUUGGGGGGCAGCGGCCGCAGCCCCCCACCUGGGCCCUCGGUCCGCCCUCCCGGCGCGUCCAUGAACUCAGUGUCGCCGGCCGCCGCGCAGUACCGGAGCAGCAGCCCGGAGGACGCGCGCCGCCGGCCCGAGGCCCGCAGGCCGCGGGGUCCCAGAGGCCCAGACCCCAACGGCCUGGGGCCUUCCGGAGCCAGCGGCCCCGCUCUUGGCUCUCCCGGGGCUGGCCCGAGUGAGCCGGACGAAGUGGACAAGUUCAAGGCCAAGUUCCUGACAGCCUGGAACAACGUCAAGUACGAUGGGGGAAUGGAAGCGCUGUUGCUGUCAUGCAAGUGCUUCAUCUCGCUGGGCGCUGCCCCUACGUCUCCCCAGGUUGGGUGGUUAAAAGCCGGACCAGCUYUAGCAAGAUCUCCAGCAUCCACCUCUGUGGCCGCCGCUACCGUUUCGAGGGCGAGGGUGACAUACAGCGUUUCCAGCGGGACUUUGUGUCCCGCCUGUGGCUCACAUACCGCCGGGACUUCCCGCCCCUUCCUGGGGGCUGCCUGACCUCGGACUGUGGCUGGGGGUGCAUGUUACGCAGCGGCCAGAUGAUGCUGGCACAGGGCCUUCUGCUGCAUUUCCUGCCCAGAGACUGGACAUGGGCCGAGGGCAUGGGCCUGGGCCCCCCUGAGCUGUCAGGGUCAGCCUCUCCCAGCCGGUACCAUGGGCCUGCCCGCUGGAUGCCCCCACGCUGGGCCCAGGGUGCCCCUGAGCUGGAGCAGGAACGCCGGCACCGGCAGAUUGUGUCCUGGUUCGCCGACCACCCCCGGGCCCCCUUUGGCCUACACCGGCUGGUGGAGCUUGGGCAGAGCUCAGGCAAGAAGGCAGGUGACUGGUAUGGGCCAUCGCUAGUGGCACACAYCCUCAGGAAAGCCGUGGAGAGCUGCUCCGACGUCACCCGCCUGGUGGUGUACGUUUCUCAGGACUGCACAGUGUACAAGGCGGAUGUGGCACGCCUGGUGGCCAGGCCAGACCCCACAGCCGAGUGGAAGUCUGUGGUCAUCCUGGUGCCCGUGCGACUGGGUGGCGAGACUCUCAACCCCGUGUAUGUGCCCUGCGUGAAGGAACUCCUGCGUUGCGAGCUGUGCCUGGGCAUCAUGGGUGGGAAACCGCGACACUCACUGUACUUCAUUGGCUACCAAGAUGACUUCCUGCUGUACCUGGACCCUCACUACUGCCAGCCCACUGUGGAUGUCAGCCAGGCCGACUUCCCCCUGGAGUCCUUCCACUGCACCUCGCCCCGCAAGAUGGCCUUUGCCAAGAUGGACCCAAGCUGUACCGUGGGCUUCUAUGCUGGAGACAGGAAGGAGUUUGAGACACUCUGCUCAGAGCUGACCAGGGUCCUCAGCUCCUCCUCAGCCACAGAGCGGUACCCCAUGUUCACCCUGGCCGAGGGCCAUGCUCAGGACCACAGCCUGGACGACCUCUGCUCCCAGCUCGCCCAGCCCACACUCCGGCUCCCUCGCACAGGGCGGCUCCUCAGGGCCAAACGCCCCAGCUCUGAGGm6ACUUUGUGUUUUUAUAAAGGGAGGGGAUGAGGGGAAAGAUACAACACUAUUUAUUUUUUUAUUUAUGUCAUGUC
Sequence (MODOMICS CODE ENCODING)	UC2000000006AUCCGGGGUCCUGGCCCGCUAAGAUGGCGAUGGCUGCGGUAGCAGCGGCGGCGGCUGUUGCCUGGCCCGGUACCCUGGGGACGGGGGCCGAGUAGCGCCUUCCCCGGGCCCCGUGAACCGGCUGCGGGUCGCCCUUGGGGGGCAGCGGCCGCAGCCCCCCACCUGGGCCCUCGGUCCGCCCUCCCGGCGCGUCCAUGAACUCAGUGUCGCCGGCCGCCGCGCAGUACCGGAGCAGCAGCCCGGAGGACGCGCGCCGCCGGCCCGAGGCCCGCAGGCCGCGGGGUCCCAGAGGCCCAGACCCCAACGGCCUGGGGCCUUCCGGAGCCAGCGGCCCCGCUCUUGGCUCUCCCGGGGCUGGCCCGAGUGAGCCGGACGAAGUGGACAAGUUCAAGGCCAAGUUCCUGACAGCCUGGAACAACGUCAAGUACGAUGGGGGAAUGGAAGCGCUGUUGCUGUCAUGCAAGUGCUUCAUCUCGCUGGGCGCUGCCCCUACGUCUCCCCAGGUUGGGUGGUUAAAAGCCGGACCAGCU2000000009UUAGCAAGAUCUCCAGCAUCCACCUCUGUGGCCGCCGCUACCGUUUCGAGGGCGAGGGUGACAUACAGCGUUUCCAGCGGGACUUUGUGUCCCGCCUGUGGCUCACAUACCGCCGGGACUUCCCGCCCCUUCCUGGGGGCUGCCUGACCUCGGACUGUGGCUGGGGGUGCAUGUUACGCAGCGGCCAGAUGAUGCUGGCACAGGGCCUUCUGCUGCAUUUCCUGCCCAGAGACUGGACAUGGGCCGAGGGCAUGGGCCUGGGCCCCCCUGAGCUGUCAGGGUCAGCCUCUCCCAGCCGGUACCAUGGGCCUGCCCGCUGGAUGCCCCCACGCUGGGCCCAGGGUGCCCCUGAGCUGGAGCAGGAACGCCGGCACCGGCAGAUUGUGUCCUGGUUCGCCGACCACCCCCGGGCCCCCUUUGGCCUACACCGGCUGGUGGAGCUUGGGCAGAGCUCAGGCAAGAAGGCAGGUGACUGGUAUGGGCCAUCGCUAGUGGCACACA2000000009UCCUCAGGAAAGCCGUGGAGAGCUGCUCCGACGUCACCCGCCUGGUGGUGUACGUUUCUCAGGACUGCACAGUGUACAAGGCGGAUGUGGCACGCCUGGUGGCCAGGCCAGACCCCACAGCCGAGUGGAAGUCUGUGGUCAUCCUGGUGCCCGUGCGACUGGGUGGCGAGACUCUCAACCCCGUGUAUGUGCCCUGCGUGAAGGAACUCCUGCGUUGCGAGCUGUGCCUGGGCAUCAUGGGUGGGAAACCGCGACACUCACUGUACUUCAUUGGCUACCAAGAUGACUUCCUGCUGUACCUGGACCCUCACUACUGCCAGCCCACUGUGGAUGUCAGCCAGGCCGACUUCCCCCUGGAGUCCUUCCACUGCACCUCGCCCCGCAAGAUGGCCUUUGCCAAGAUGGACCCAAGCUGUACCGUGGGCUUCUAUGCUGGAGACAGGAAGGAGUUUGAGACACUCUGCUCAGAGCUGACCAGGGUCCUCAGCUCCUCCUCAGCCACAGAGCGGUACCCCAUGUUCACCCUGGCCGAGGGCCAUGCUCAGGACCACAGCCUGGACGACCUCUGCUCCCAGCUCGCCCAGCCCACACUCCGGCUCCCUCGCACAGGGCGGCUCCUCAGGGCCAAACGCCCCAGCUCUGAGG2000000006ACUUUGUGUUUUUAUAAAGGGAGGGGAUGAGGGGAAAGAUACAACACUAUUUAUUUUUUUAUUUAUGUCAUGUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	3	533	1034	1679
Modification Positions	m6A	Y	Y	m6A
Genomic Coordinates	19:10543897:+	19:10544810:+	19:10547109:+	19:10553051:+
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek KRfQJWH4K5KH msuJfBpJvM5H QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dA7YoLwHrzgR ksEP666umrV9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8