General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000344824
Gene ID:	ENSG00000167460
Gene Name:	TPM4
Sequence (UNICHARACTER ENCODING)	UUUCACAAUUCUCUGCAUUUGGUGUUUCAGAGGACACUGCAAUACGAAACACCUGUGGGAGUGCCCUCUUUCUGCUUCUAGGAAUCUGAGGCUGAGAAACCUUCCUGACUCUAUUUGUGUAGUUUUUCGGCCACGUUAGCCUCAUUCUAUUUUUUUUUCCCCCAGUAUGAACUCAGGGCAGGAGAGGGAGUGGUUUCCUAAUAAUUUUUUUUUUUUGAGACGGAAUCUUGCUCUGUUACCCAGGCUGGAGUGCAGUGGCGCGAUCUCGGCUCAUUGCAACCUUCACCUCCCGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCGCCUGCCCCCACACCCAACUGAUUUUUUUGUAUUUUUAGUAGAGAUGCGGUUUCACCAUGUUGGCCAGGCUGGUCUCGAACUCCUGACCUCAUGUGAUCCACCCACCUCCGCCUCCCAAAGUGUUAGGAUUACGGAUGUGAGCCACCGCGCCCGGCCUUCCUAAUAAUUUUGAUAGCCUUCCCCAGUUCAGGGAUUCUUCAUUUGUUCUGAUAGGAAAAAGCUAGCGUGGCUUCCCUUUUCCUCUCGGUUGAGGCCCGUUUGACCCGUUCUCAAUAUUCCUUCCAAAGAGCAGGCAUCGCUGGAAAACUCGCCUUGCCUCGUAGCCCUGGCAGGACCUAGGGGACAGGUUCUGACAAGGAAGAGCCCUGGGUGGGUCUUAAGAGGCCAUUCAUUUCUUACCAAUUCUGAGUCACUGAAUAAAACCACUUCCCCCAGUGGGGCCCCUCGGUUUCUUCACCUGUAAAAUGGGUGCGAUGUGUGAGGAUGAAAUUGCAGUAAAAUAAAACCGUGGCAGUAAGAGAUGCCUUUCUCUGGCACAUCCCACCUGCUGGGCAUAAGCGGCGCCACCCUCUGGAGUUACAGCCUCAAGGCAGUCCGGCUGAAGGUGAUGUGGCCGCCCUCAACCGACGCAPCCAGCUCGUUGAGGAGGAGUUGGACAGGGCUCAGGAACGACUGGCCACGGCCCUGCAGAAGCUGGAGGAGGCAGAAAAAGCUGCAGAUGAGAGUGAGAGAGGAAUGAAGGUGAUAGAAAACCGGGCCAUGAAGGAUGAGGAGAAGAUGGAGAUUCAGGAGAUGCAGCUCAAAGAGGCCAAGCACAUUGCGGAAGAGGCUGACCGCAAAUACGAGGAGGUAGCUCGUAЖGCUGGUCAPCCUGGAGGGUGAGCUGGAGAGGGCAGAGGAGCGUGCGGAGGUGUCUGAACUAAAAUGUGGUGACCUGGAAGAAGAACUCAAGAAUGUUACUAACAAUCUGAAAUCUCUGGAGGCUGCAUCUGAAAAGUAUUCUGAAAAGGAGGACAAAUAUGAAGAAGAAAUUAAACUUCUGUCUGACAAACUGAAAGAGGCUGAGACCCGUGCUGAAUUUGCAGAGAGAACGGUUGCAAAACUGGAAAAGЖCAAUUGAUGACCUGGAAGAGAAACUUGCCCAGGCCAAAGAAGAGAACGUGGGCUUACAUCAGACACUGGAUCAGACACUAAACGAЖCUUAACUGUAUAUAAGCAAAACAGAAGAGUCUUGUUCCAACAGAAACUCUGGAGCUCCGUGGGUCUUUCUCUUCUCUUGUAAGAAGUUCCUUUUGUUAUUGCCAUCUUCGCUUUGCUGGAAAUGUCAAGCAAAUUAUGAAUACЖUGACCAAAUAUUUUGUAUCGGAGAAGCUUUGAGCACCAGUUAAAUCUCAUUCCUUCCCUUUUUUUUUCAAAUGGCACCAGCUUUUUCAGCUCUCUUAUUUUUUCCUUAAGUAGCAUUUAUUCCUAAGGUAGGCAGGGUAUUUCCUAGUAAGCAUACUUUCUUAAGACGGAGGCCAUUUGGUUCCUGGGAGAAUAGGCAGCCCCACACUUUGAAGAAUACAGACCCCAGUAUCUAGUCGUGGAUAUAAUUAAAACGCUGAAGACCAPAACCUUUUGGGUCAACUGUUGGUCAAACUAUAGGAGAGЖCCAGGGACCAUCACAUGGGUAGGGAUUUUCCAUCCAGAGCCAAUAAAAGGЖCUGGUGGGGGCCGGGGGUGGCUAUUGUGGGAAGUCAPAACCCACAGAUAGAUCAACCUAAGAAUCCUGGCCCUUCUCCACUCUCCACCAUGCAGGЖCAAACAUCUUCUCAAGCAGUCAACGUAGAAUGCUUGGGAAAUAGUCAUAAUUACCCACAUAUAGUAAUUAAUAGAUGGUAAUUAAUUGAUCCUUGAUGUGAUGUUCUUUUGCAUAUUUCCUUCAUUCUAAAGUUGUUCCCUGGCCGGGAGCGUUGGCUUUCGCCUGUAAUCCCAACACUUUGGGAGGCCAGGACAGAUCACUUGAGGUCAGGAGUUCGAGAC
Sequence (SHORT NAMES ENCODING)	UUUCACAAUUCUCUGCAUUUGGUGUUUCAGAGGACACUGCAAUACGAAACACCUGUGGGAGUGCCCUCUUUCUGCUUCUAGGAAUCUGAGGCUGAGAAACCUUCCUGACUCUAUUUGUGUAGUUUUUCGGCCACGUUAGCCUCAUUCUAUUUUUUUUUCCCCCAGUAUGAACUCAGGGCAGGAGAGGGAGUGGUUUCCUAAUAAUUUUUUUUUUUUGAGACGGAAUCUUGCUCUGUUACCCAGGCUGGAGUGCAGUGGCGCGAUCUCGGCUCAUUGCAACCUUCACCUCCCGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCGCCUGCCCCCACACCCAACUGAUUUUUUUGUAUUUUUAGUAGAGAUGCGGUUUCACCAUGUUGGCCAGGCUGGUCUCGAACUCCUGACCUCAUGUGAUCCACCCACCUCCGCCUCCCAAAGUGUUAGGAUUACGGAUGUGAGCCACCGCGCCCGGCCUUCCUAAUAAUUUUGAUAGCCUUCCCCAGUUCAGGGAUUCUUCAUUUGUUCUGAUAGGAAAAAGCUAGCGUGGCUUCCCUUUUCCUCUCGGUUGAGGCCCGUUUGACCCGUUCUCAAUAUUCCUUCCAAAGAGCAGGCAUCGCUGGAAAACUCGCCUUGCCUCGUAGCCCUGGCAGGACCUAGGGGACAGGUUCUGACAAGGAAGAGCCCUGGGUGGGUCUUAAGAGGCCAUUCAUUUCUUACCAAUUCUGAGUCACUGAAUAAAACCACUUCCCCCAGUGGGGCCCCUCGGUUUCUUCACCUGUAAAAUGGGUGCGAUGUGUGAGGAUGAAAUUGCAGUAAAAUAAAACCGUGGCAGUAAGAGAUGCCUUUCUCUGGCACAUCCCACCUGCUGGGCAUAAGCGGCGCCACCCUCUGGAGUUACAGCCUCAAGGCAGUCCGGCUGAAGGUGAUGUGGCCGCCCUCAACCGACGCAYCCAGCUCGUUGAGGAGGAGUUGGACAGGGCUCAGGAACGACUGGCCACGGCCCUGCAGAAGCUGGAGGAGGCAGAAAAAGCUGCAGAUGAGAGUGAGAGAGGAAUGAAGGUGAUAGAAAACCGGGCCAUGAAGGAUGAGGAGAAGAUGGAGAUUCAGGAGAUGCAGCUCAAAGAGGCCAAGCACAUUGCGGAAGAGGCUGACCGCAAAUACGAGGAGGUAGCUCGUAm6AGCUGGUCAYCCUGGAGGGUGAGCUGGAGAGGGCAGAGGAGCGUGCGGAGGUGUCUGAACUAAAAUGUGGUGACCUGGAAGAAGAACUCAAGAAUGUUACUAACAAUCUGAAAUCUCUGGAGGCUGCAUCUGAAAAGUAUUCUGAAAAGGAGGACAAAUAUGAAGAAGAAAUUAAACUUCUGUCUGACAAACUGAAAGAGGCUGAGACCCGUGCUGAAUUUGCAGAGAGAACGGUUGCAAAACUGGAAAAGm6ACAAUUGAUGACCUGGAAGAGAAACUUGCCCAGGCCAAAGAAGAGAACGUGGGCUUACAUCAGACACUGGAUCAGACACUAAACGAm6ACUUAACUGUAUAUAAGCAAAACAGAAGAGUCUUGUUCCAACAGAAACUCUGGAGCUCCGUGGGUCUUUCUCUUCUCUUGUAAGAAGUUCCUUUUGUUAUUGCCAUCUUCGCUUUGCUGGAAAUGUCAAGCAAAUUAUGAAUACm6AUGACCAAAUAUUUUGUAUCGGAGAAGCUUUGAGCACCAGUUAAAUCUCAUUCCUUCCCUUUUUUUUUCAAAUGGCACCAGCUUUUUCAGCUCUCUUAUUUUUUCCUUAAGUAGCAUUUAUUCCUAAGGUAGGCAGGGUAUUUCCUAGUAAGCAUACUUUCUUAAGACGGAGGCCAUUUGGUUCCUGGGAGAAUAGGCAGCCCCACACUUUGAAGAAUACAGACCCCAGUAUCUAGUCGUGGAUAUAAUUAAAACGCUGAAGACCAYAACCUUUUGGGUCAACUGUUGGUCAAACUAUAGGAGAGm6ACCAGGGACCAUCACAUGGGUAGGGAUUUUCCAUCCAGAGCCAAUAAAAGGm6ACUGGUGGGGGCCGGGGGUGGCUAUUGUGGGAAGUCAYAACCCACAGAUAGAUCAACCUAAGAAUCCUGGCCCUUCUCCACUCUCCACCAUGCAGGm6ACAAACAUCUUCUCAAGCAGUCAACGUAGAAUGCUUGGGAAAUAGUCAUAAUUACCCACAUAUAGUAAUUAAUAGAUGGUAAUUAAUUGAUCCUUGAUGUGAUGUUCUUUUGCAUAUUUCCUUCAUUCUAAAGUUGUUCCCUGGCCGGGAGCGUUGGCUUUCGCCUGUAAUCCCAACACUUUGGGAGGCCAGGACAGAUCACUUGAGGUCAGGAGUUCGAGAC
Sequence (MODOMICS CODE ENCODING)	UUUCACAAUUCUCUGCAUUUGGUGUUUCAGAGGACACUGCAAUACGAAACACCUGUGGGAGUGCCCUCUUUCUGCUUCUAGGAAUCUGAGGCUGAGAAACCUUCCUGACUCUAUUUGUGUAGUUUUUCGGCCACGUUAGCCUCAUUCUAUUUUUUUUUCCCCCAGUAUGAACUCAGGGCAGGAGAGGGAGUGGUUUCCUAAUAAUUUUUUUUUUUUGAGACGGAAUCUUGCUCUGUUACCCAGGCUGGAGUGCAGUGGCGCGAUCUCGGCUCAUUGCAACCUUCACCUCCCGGGUUCAAGCGAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGAUUACAGGCGCCUGCCCCCACACCCAACUGAUUUUUUUGUAUUUUUAGUAGAGAUGCGGUUUCACCAUGUUGGCCAGGCUGGUCUCGAACUCCUGACCUCAUGUGAUCCACCCACCUCCGCCUCCCAAAGUGUUAGGAUUACGGAUGUGAGCCACCGCGCCCGGCCUUCCUAAUAAUUUUGAUAGCCUUCCCCAGUUCAGGGAUUCUUCAUUUGUUCUGAUAGGAAAAAGCUAGCGUGGCUUCCCUUUUCCUCUCGGUUGAGGCCCGUUUGACCCGUUCUCAAUAUUCCUUCCAAAGAGCAGGCAUCGCUGGAAAACUCGCCUUGCCUCGUAGCCCUGGCAGGACCUAGGGGACAGGUUCUGACAAGGAAGAGCCCUGGGUGGGUCUUAAGAGGCCAUUCAUUUCUUACCAAUUCUGAGUCACUGAAUAAAACCACUUCCCCCAGUGGGGCCCCUCGGUUUCUUCACCUGUAAAAUGGGUGCGAUGUGUGAGGAUGAAAUUGCAGUAAAAUAAAACCGUGGCAGUAAGAGAUGCCUUUCUCUGGCACAUCCCACCUGCUGGGCAUAAGCGGCGCCACCCUCUGGAGUUACAGCCUCAAGGCAGUCCGGCUGAAGGUGAUGUGGCCGCCCUCAACCGACGCA2000000009UCCAGCUCGUUGAGGAGGAGUUGGACAGGGCUCAGGAACGACUGGCCACGGCCCUGCAGAAGCUGGAGGAGGCAGAAAAAGCUGCAGAUGAGAGUGAGAGAGGAAUGAAGGUGAUAGAAAACCGGGCCAUGAAGGAUGAGGAGAAGAUGGAGAUUCAGGAGAUGCAGCUCAAAGAGGCCAAGCACAUUGCGGAAGAGGCUGACCGCAAAUACGAGGAGGUAGCUCGUA2000000006AGCUGGUCA2000000009UCCUGGAGGGUGAGCUGGAGAGGGCAGAGGAGCGUGCGGAGGUGUCUGAACUAAAAUGUGGUGACCUGGAAGAAGAACUCAAGAAUGUUACUAACAAUCUGAAAUCUCUGGAGGCUGCAUCUGAAAAGUAUUCUGAAAAGGAGGACAAAUAUGAAGAAGAAAUUAAACUUCUGUCUGACAAACUGAAAGAGGCUGAGACCCGUGCUGAAUUUGCAGAGAGAACGGUUGCAAAACUGGAAAAG2000000006ACAAUUGAUGACCUGGAAGAGAAACUUGCCCAGGCCAAAGAAGAGAACGUGGGCUUACAUCAGACACUGGAUCAGACACUAAACGA2000000006ACUUAACUGUAUAUAAGCAAAACAGAAGAGUCUUGUUCCAACAGAAACUCUGGAGCUCCGUGGGUCUUUCUCUUCUCUUGUAAGAAGUUCCUUUUGUUAUUGCCAUCUUCGCUUUGCUGGAAAUGUCAAGCAAAUUAUGAAUAC2000000006AUGACCAAAUAUUUUGUAUCGGAGAAGCUUUGAGCACCAGUUAAAUCUCAUUCCUUCCCUUUUUUUUUCAAAUGGCACCAGCUUUUUCAGCUCUCUUAUUUUUUCCUUAAGUAGCAUUUAUUCCUAAGGUAGGCAGGGUAUUUCCUAGUAAGCAUACUUUCUUAAGACGGAGGCCAUUUGGUUCCUGGGAGAAUAGGCAGCCCCACACUUUGAAGAAUACAGACCCCAGUAUCUAGUCGUGGAUAUAAUUAAAACGCUGAAGACCA2000000009UAACCUUUUGGGUCAACUGUUGGUCAAACUAUAGGAGAG2000000006ACCAGGGACCAUCACAUGGGUAGGGAUUUUCCAUCCAGAGCCAAUAAAAGG2000000006ACUGGUGGGGGCCGGGGGUGGCUAUUGUGGGAAGUCA2000000009UAACCCACAGAUAGAUCAACCUAAGAAUCCUGGCCCUUCUCCACUCUCCACCAUGCAGG2000000006ACAAACAUCUUCUCAAGCAGUCAACGUAGAAUGCUUGGGAAAUAGUCAUAAUUACCCACAUAUAGUAAUUAAUAGAUGGUAAUUAAUUGAUCCUUGAUGUGAUGUUCUUUUGCAUAUUUCCUUCAUUCUAAAGUUGUUCCCUGGCCGGGAGCGUUGGCUUUCGCCUGUAAUCCCAACACUUUGGGAGGCCAGGACAGAUCACUUGAGGUCAGGAGUUCGAGAC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	976	1204	1213	1455	1541	1685	1951	1990	2041	2078	2137
Modification Positions	Y	m6A	Y	m6A	m6A	m6A	Y	m6A	m6A	Y	m6A
Genomic Coordinates	19:16081947:+	19:16088037:+	19:16088046:+	19:16093735:+	19:16101331:+	19:16101475:+	19:16101741:+	19:16101780:+	19:16101831:+	19:16101868:+	19:16101927:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se WiQcrNTGZHPT BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	ArijeGVTwYBw WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8