Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000619960
Gene ID: ENSG00000291174
Gene Name: None
Sequence (UNICHARACTER ENCODING) AAGUCGCCUACGUGCGCGCCCGGGAGCUGCACACUCUUGAAGUGACCGGCCUGGAGACGGUUGCCCAGAGCAAGGCCCAUGUAGCAUCCCUGGAGGGCCUCAUCCCUGAAGAUAAGGUUGUGCUUCUGGCAGGUUCUCCCUUACЖGAAUGAAGCCACCCUGGGUCAGUGUGGGGUGGAAGCCCUGACAACCCUGGAAGUGGUUGGCCGCAGGCUAGGAGUUCACAAUGUCUAAAAGUCAGCUGAUUUUGUGUUAAAAUUCAGUGUCUGGCUUUGCUUCAAAAAUUGGGAAGAUCGGCCGGACGCGGUGGCUCACGCCUGUAAUCUCAGCACUUUGGGAGGCCGAGGUGGGUGGAUCACGAGGUCAGGAGAUCGAGACCAPCCUGGCUAЖCAUGGUGAAACCCUGUCUCUACUAAAAAUACAAAAAAAAAAAAAAAAAAAAAAAAAUUAGCCGGGCGUGGUGGCGGGCGCCUAUAGUCCCAGCUACUCCGGAGGCUGAGGCAGGAGAAUGGCGUGAACCCAGGAGGCAGAGCUUGCAAUGAGCCGAGAUCGCACCACUGAЖCUGCAGCCUGGGCAACAGAGAGAGЖCUCCGUCUCAAAAAAAAAAAAAAAAAAAUGGGGGAGAUCAGGUGЖCAUUGGGCCUGUGUUCCCACAUACCAGCAAUCUGCCCUAGCUGAGUGGUGGCUGUCCCUUUGGAAGGCUCUACAGUUUGCCACCAUCUCCACACCPCCCUCUUCCAGGGCCAGCCACCAUUUAUCAUCAGGCUUGCGCUGUUGUUUCUCUUAAAGAAAAGUGAAUUCUCUUUUUGUUCCUAUGUCUCUAUCAAAAGUGGGAAAAUGAAAGAUGG
Sequence (SHORT NAMES ENCODING) AAGUCGCCUACGUGCGCGCCCGGGAGCUGCACACUCUUGAAGUGACCGGCCUGGAGACGGUUGCCCAGAGCAAGGCCCAUGUAGCAUCCCUGGAGGGCCUCAUCCCUGAAGAUAAGGUUGUGCUUCUGGCAGGUUCUCCCUUACm6AGAAUGAAGCCACCCUGGGUCAGUGUGGGGUGGAAGCCCUGACAACCCUGGAAGUGGUUGGCCGCAGGCUAGGAGUUCACAAUGUCUAAAAGUCAGCUGAUUUUGUGUUAAAAUUCAGUGUCUGGCUUUGCUUCAAAAAUUGGGAAGAUCGGCCGGACGCGGUGGCUCACGCCUGUAAUCUCAGCACUUUGGGAGGCCGAGGUGGGUGGAUCACGAGGUCAGGAGAUCGAGACCAYCCUGGCUAm6ACAUGGUGAAACCCUGUCUCUACUAAAAAUACAAAAAAAAAAAAAAAAAAAAAAAAAUUAGCCGGGCGUGGUGGCGGGCGCCUAUAGUCCCAGCUACUCCGGAGGCUGAGGCAGGAGAAUGGCGUGAACCCAGGAGGCAGAGCUUGCAAUGAGCCGAGAUCGCACCACUGAm6ACUGCAGCCUGGGCAACAGAGAGAGm6ACUCCGUCUCAAAAAAAAAAAAAAAAAAAUGGGGGAGAUCAGGUGm6ACAUUGGGCCUGUGUUCCCACAUACCAGCAAUCUGCCCUAGCUGAGUGGUGGCUGUCCCUUUGGAAGGCUCUACAGUUUGCCACCAUCUCCACACCYCCCUCUUCCAGGGCCAGCCACCAUUUAUCAUCAGGCUUGCGCUGUUGUUUCUCUUAAAGAAAAGUGAAUUCUCUUUUUGUUCCUAUGUCUCUAUCAAAAGUGGGAAAAUGAAAGAUGG
Sequence (MODOMICS CODE ENCODING) AAGUCGCCUACGUGCGCGCCCGGGAGCUGCACACUCUUGAAGUGACCGGCCUGGAGACGGUUGCCCAGAGCAAGGCCCAUGUAGCAUCCCUGGAGGGCCUCAUCCCUGAAGAUAAGGUUGUGCUUCUGGCAGGUUCUCCCUUAC2000000006AGAAUGAAGCCACCCUGGGUCAGUGUGGGGUGGAAGCCCUGACAACCCUGGAAGUGGUUGGCCGCAGGCUAGGAGUUCACAAUGUCUAAAAGUCAGCUGAUUUUGUGUUAAAAUUCAGUGUCUGGCUUUGCUUCAAAAAUUGGGAAGAUCGGCCGGACGCGGUGGCUCACGCCUGUAAUCUCAGCACUUUGGGAGGCCGAGGUGGGUGGAUCACGAGGUCAGGAGAUCGAGACCA2000000009UCCUGGCUA2000000006ACAUGGUGAAACCCUGUCUCUACUAAAAAUACAAAAAAAAAAAAAAAAAAAAAAAAAUUAGCCGGGCGUGGUGGCGGGCGCCUAUAGUCCCAGCUACUCCGGAGGCUGAGGCAGGAGAAUGGCGUGAACCCAGGAGGCAGAGCUUGCAAUGAGCCGAGAUCGCACCACUGA2000000006ACUGCAGCCUGGGCAACAGAGAGAG2000000006ACUCCGUCUCAAAAAAAAAAAAAAAAAAAUGGGGGAGAUCAGGUG2000000006ACAUUGGGCCUGUGUUCCCACAUACCAGCAAUCUGCCCUAGCUGAGUGGUGGCUGUCCCUUUGGAAGGCUCUACAGUUUGCCACCAUCUCCACACC2000000009UCCCUCUUCCAGGGCCAGCCACCAUUUAUCAUCAGGCUUGCGCUGUUGUUUCUCUUAAAGAAAAGUGAAUUCUCUUUUUGUUCCUAUGUCUCUAUCAAAAGUGGGAAAAUGAAAGAUGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 145 380 389 560 585 630 726
Modification Positions m6A Y m6A m6A m6A m6A Y
Genomic Coordinates 11:65455507:+ 11:65455854:+ 11:65455863:+ 11:65456034:+ 11:65456059:+ 11:65456104:+ 11:65456200:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3kRDPWwiRCgi
L6w2k2VEv4EY
bXBqJigD9oV3
dknfVe6BK8aP
bXBqJigD9oV3
dknfVe6BK8aP
6UuHp6YApVKv
jNkxUQNx8GRd
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
6UuHp6YApVKv
jNkxUQNx8GRd
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
dknfVe6BK8aP
3TeAZFYFxgvp
6UuHp6YApVKv
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
dknfVe6BK8aP
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ