General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000241051
Gene ID:	ENSG00000121690
Gene Name:	DEPDC7
Sequence (UNICHARACTER ENCODING)	ACAGUUAACAGACGGGCGCUCAGGGAGCUAGGGAGCUGUGAAGCUGCUGGAGGAGUUGGCGUCCGGGGAGCAAGGGCCAUGGCCACCGUGCAGGAGAAGGCUGCUGCGCUGAACCUCUCGGCUCUCCACAGCCCCGCGCACAGGCCUCCGGGUUUCAGUGUAGCUCAGAAGCCAUUUGGAGCCACGUAUGUAUGGAGCAGCAUCAUAAACACUCUUCAAACACAAGUGGAAGUGAAAAAACGAAGGCACCGUUUAAAACGACAUAAUGЖCUGCUUUGUUGGUUCAGAAGCUGUGGAUGUCAUUUUUUCUCACCUAAUUCAGAAUAAGUAUUUUGGUGAUGUAGAUAUUCCUCGAGCCAAAGUGGUGAGAGUGUGUCAAGCGCUUAUGGЖCUACAAAGUAUUUGAAGCAGUUCCAACCAAAGUCUUUGGAAAAGACAAAAAACCUACAUUUGAAGAUAGUAGUUGCAGCCUUUAUAGAUUCACCACAAUACCUAACCAAGACAGUCAGUUAGGCAAAGAGAACAAACUAUAUUCACCUGCCAGGUAUGCAGAUGCAUUAUUUAAGUCAUCCGAUAUCAGAUCAGCCAGUUUAGAGGACCUGUGGGAAAAUCUGAGUUUAAAGCCUGCCAACUCCCCUCAUGUAAAUAUCUCUGCAACCUUGUCUCCACAAGUUAUUAAUGAAGUGUGGCAAGAAGAAACAAUUGGGCGUCUACUACAACUUGUAGЖCCUUCCACUUCUUGACUCCUUACUGAAЖCAGCAAGAGGCUGUACCUAAAAUUCCUCAACCUAAGAGGCAGUCCACCAUGGUCAACAGCAGUAACUAUCUGGAUCGAGGGAUUCUCAAGGCUUAUAGUGACUCUCAGGAAGAUGAGUGGCUCUCGGCAGCAAUUGACUGUUUAGAAUACCUUCCAGACCAAAUGGUGGUGGAAAUAAGCAGAAGCUUUCCUGAGCAACCAGACCGAACAGACUUAGUGAAAGAACUUCUGUUUGAUGCCAUUGGCAGAUAUUACAGUAGUAGGGAACCUCUGUUAAAUCACUUAUCUGACGUUCAUAAUGGAAUUGCAGAACUCUUAGUGAAUGGGAAGACGGAAAUAGCUPUAGAAGCUACCCAGCUCCUUCUAAAGCUUUUAGAUUUCCAAAAUAGAGAAGAAUUUAGAAGACUACUGUAUUUCAUGGCUGUUGCAGCAAAUCCUUCUGAGUUUAAAUUACAGAAAGAAAGUGACAACCGAAUGGUUGUGAAAAGGAUAUUCUCAAAAGCUAUUGUUGACAAUAAAAAUUUAUCCAAAGGCAAAACAGAUCUUCUGGUACUCUUUUUAAUGGAUCAUCAGAAAGAUGUUUUUAAGAUUCCUGGAACUCUACAUAAAAUUGUAAGUGUUAAGCUUAUGGCCAUACAGAACGGAAGAGAUCCAAAUAGAGAUGCAGGAUAUAUUUAUUGCCAGAGAAUUGAUCAACGUGACUAUUCCAACAAUACAGAGAAGACAACCAAAGAUGAGCUGUUGAAUUUACUAAAAACUCUUGAUGAGGAUUCAAAACUUUCUGCCAAAGAGAAGAAAAAAUUGCUAGGUCAAUUCUAUAAGUGUCACCCAGACAUCUPUAUUGAGCAUUUUGGAGACUGAGUUUUUAAUAUCUGUAUAUAAGUUGUGUAUUUUAAGAAUAAAUUAUGUAUCCUAAAUAUCCAAUCACAUUUGUAAGCGUGGAAGCUCUAAAUUUGAAACUGUACUUAAUAAAAAUUUUUUUGUAUAA
Sequence (SHORT NAMES ENCODING)	ACAGUUAACAGACGGGCGCUCAGGGAGCUAGGGAGCUGUGAAGCUGCUGGAGGAGUUGGCGUCCGGGGAGCAAGGGCCAUGGCCACCGUGCAGGAGAAGGCUGCUGCGCUGAACCUCUCGGCUCUCCACAGCCCCGCGCACAGGCCUCCGGGUUUCAGUGUAGCUCAGAAGCCAUUUGGAGCCACGUAUGUAUGGAGCAGCAUCAUAAACACUCUUCAAACACAAGUGGAAGUGAAAAAACGAAGGCACCGUUUAAAACGACAUAAUGm6ACUGCUUUGUUGGUUCAGAAGCUGUGGAUGUCAUUUUUUCUCACCUAAUUCAGAAUAAGUAUUUUGGUGAUGUAGAUAUUCCUCGAGCCAAAGUGGUGAGAGUGUGUCAAGCGCUUAUGGm6ACUACAAAGUAUUUGAAGCAGUUCCAACCAAAGUCUUUGGAAAAGACAAAAAACCUACAUUUGAAGAUAGUAGUUGCAGCCUUUAUAGAUUCACCACAAUACCUAACCAAGACAGUCAGUUAGGCAAAGAGAACAAACUAUAUUCACCUGCCAGGUAUGCAGAUGCAUUAUUUAAGUCAUCCGAUAUCAGAUCAGCCAGUUUAGAGGACCUGUGGGAAAAUCUGAGUUUAAAGCCUGCCAACUCCCCUCAUGUAAAUAUCUCUGCAACCUUGUCUCCACAAGUUAUUAAUGAAGUGUGGCAAGAAGAAACAAUUGGGCGUCUACUACAACUUGUAGm6ACCUUCCACUUCUUGACUCCUUACUGAAm6ACAGCAAGAGGCUGUACCUAAAAUUCCUCAACCUAAGAGGCAGUCCACCAUGGUCAACAGCAGUAACUAUCUGGAUCGAGGGAUUCUCAAGGCUUAUAGUGACUCUCAGGAAGAUGAGUGGCUCUCGGCAGCAAUUGACUGUUUAGAAUACCUUCCAGACCAAAUGGUGGUGGAAAUAAGCAGAAGCUUUCCUGAGCAACCAGACCGAACAGACUUAGUGAAAGAACUUCUGUUUGAUGCCAUUGGCAGAUAUUACAGUAGUAGGGAACCUCUGUUAAAUCACUUAUCUGACGUUCAUAAUGGAAUUGCAGAACUCUUAGUGAAUGGGAAGACGGAAAUAGCUYUAGAAGCUACCCAGCUCCUUCUAAAGCUUUUAGAUUUCCAAAAUAGAGAAGAAUUUAGAAGACUACUGUAUUUCAUGGCUGUUGCAGCAAAUCCUUCUGAGUUUAAAUUACAGAAAGAAAGUGACAACCGAAUGGUUGUGAAAAGGAUAUUCUCAAAAGCUAUUGUUGACAAUAAAAAUUUAUCCAAAGGCAAAACAGAUCUUCUGGUACUCUUUUUAAUGGAUCAUCAGAAAGAUGUUUUUAAGAUUCCUGGAACUCUACAUAAAAUUGUAAGUGUUAAGCUUAUGGCCAUACAGAACGGAAGAGAUCCAAAUAGAGAUGCAGGAUAUAUUUAUUGCCAGAGAAUUGAUCAACGUGACUAUUCCAACAAUACAGAGAAGACAACCAAAGAUGAGCUGUUGAAUUUACUAAAAACUCUUGAUGAGGAUUCAAAACUUUCUGCCAAAGAGAAGAAAAAAUUGCUAGGUCAAUUCUAUAAGUGUCACCCAGACAUCUYUAUUGAGCAUUUUGGAGACUGAGUUUUUAAUAUCUGUAUAUAAGUUGUGUAUUUUAAGAAUAAAUUAUGUAUCCUAAAUAUCCAAUCACAUUUGUAAGCGUGGAAGCUCUAAAUUUGAAACUGUACUUAAUAAAAAUUUUUUUGUAUAA
Sequence (MODOMICS CODE ENCODING)	ACAGUUAACAGACGGGCGCUCAGGGAGCUAGGGAGCUGUGAAGCUGCUGGAGGAGUUGGCGUCCGGGGAGCAAGGGCCAUGGCCACCGUGCAGGAGAAGGCUGCUGCGCUGAACCUCUCGGCUCUCCACAGCCCCGCGCACAGGCCUCCGGGUUUCAGUGUAGCUCAGAAGCCAUUUGGAGCCACGUAUGUAUGGAGCAGCAUCAUAAACACUCUUCAAACACAAGUGGAAGUGAAAAAACGAAGGCACCGUUUAAAACGACAUAAUG2000000006ACUGCUUUGUUGGUUCAGAAGCUGUGGAUGUCAUUUUUUCUCACCUAAUUCAGAAUAAGUAUUUUGGUGAUGUAGAUAUUCCUCGAGCCAAAGUGGUGAGAGUGUGUCAAGCGCUUAUGG2000000006ACUACAAAGUAUUUGAAGCAGUUCCAACCAAAGUCUUUGGAAAAGACAAAAAACCUACAUUUGAAGAUAGUAGUUGCAGCCUUUAUAGAUUCACCACAAUACCUAACCAAGACAGUCAGUUAGGCAAAGAGAACAAACUAUAUUCACCUGCCAGGUAUGCAGAUGCAUUAUUUAAGUCAUCCGAUAUCAGAUCAGCCAGUUUAGAGGACCUGUGGGAAAAUCUGAGUUUAAAGCCUGCCAACUCCCCUCAUGUAAAUAUCUCUGCAACCUUGUCUCCACAAGUUAUUAAUGAAGUGUGGCAAGAAGAAACAAUUGGGCGUCUACUACAACUUGUAG2000000006ACCUUCCACUUCUUGACUCCUUACUGAA2000000006ACAGCAAGAGGCUGUACCUAAAAUUCCUCAACCUAAGAGGCAGUCCACCAUGGUCAACAGCAGUAACUAUCUGGAUCGAGGGAUUCUCAAGGCUUAUAGUGACUCUCAGGAAGAUGAGUGGCUCUCGGCAGCAAUUGACUGUUUAGAAUACCUUCCAGACCAAAUGGUGGUGGAAAUAAGCAGAAGCUUUCCUGAGCAACCAGACCGAACAGACUUAGUGAAAGAACUUCUGUUUGAUGCCAUUGGCAGAUAUUACAGUAGUAGGGAACCUCUGUUAAAUCACUUAUCUGACGUUCAUAAUGGAAUUGCAGAACUCUUAGUGAAUGGGAAGACGGAAAUAGCU2000000009UUAGAAGCUACCCAGCUCCUUCUAAAGCUUUUAGAUUUCCAAAAUAGAGAAGAAUUUAGAAGACUACUGUAUUUCAUGGCUGUUGCAGCAAAUCCUUCUGAGUUUAAAUUACAGAAAGAAAGUGACAACCGAAUGGUUGUGAAAAGGAUAUUCUCAAAAGCUAUUGUUGACAAUAAAAAUUUAUCCAAAGGCAAAACAGAUCUUCUGGUACUCUUUUUAAUGGAUCAUCAGAAAGAUGUUUUUAAGAUUCCUGGAACUCUACAUAAAAUUGUAAGUGUUAAGCUUAUGGCCAUACAGAACGGAAGAGAUCCAAAUAGAGAUGCAGGAUAUAUUUAUUGCCAGAGAAUUGAUCAACGUGACUAUUCCAACAAUACAGAGAAGACAACCAAAGAUGAGCUGUUGAAUUUACUAAAAACUCUUGAUGAGGAUUCAAAACUUUCUGCCAAAGAGAAGAAAAAAUUGCUAGGUCAAUUCUAUAAGUGUCACCCAGACAUCU2000000009UUAUUGAGCAUUUUGGAGACUGAGUUUUUAAUAUCUGUAUAUAAGUUGUGUAUUUUAAGAAUAAAUUAUGUAUCCUAAAUAUCCAAUCACAUUUGUAAGCGUGGAAGCUCUAAAUUUGAAACUGUACUUAAUAAAAAUUUUUUUGUAUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	269	389	725	753	1096	1592
Modification Positions	m6A	m6A	m6A	m6A	Y	Y
Genomic Coordinates	11:33025776:+	11:33025896:+	11:33028657:+	11:33028685:+	11:33032359:+	11:33033433:+
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP