General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000294172
Gene ID:	ENSG00000162231
Gene Name:	NXF1
Sequence (UNICHARACTER ENCODING)	ACUUCGGUCCUGAGCGCUUGGGAGUUAGGUUGUUUGCCGGCGUAGCGGCCAGCGCCUGAGCCCGCCCUUGAUCUUCGCUGUGGCAUGGCGGACGAGGGGAAGUCGUACAGCGAACACGAUGAUGAACGCGUUAAUUUCCCUCAAAGAAAGAAGAAAGGCCGGGGUCCCUUCCGGUGGAAAUAUGGUGAAGGAAACCGUAGGUCUGGAAGAGGCGGUUCUGGUAUUCGGUCUUCCCGCCUUGAGGAAGAUGAUGGAGAUGUGGCAAUGAGUGAUGCCCAGGAUGGUCCCCGAGUACGAUACAACCCCUAUACCACCCGACCUAACCGUCGGGGUGAUACUUGGCAUGAUCGAGAUCGCAUUCAUGUUACUGUGCGGAGAGACAGAGCUCCUCCAGAGAGAGGAGGGGCUGGCACCAGCCAGGAUGGGACCUCAAAGAACUGGUUCAAGAUUACAAUUCCUUAUGGCAGAAAGUAUGACAAGGCAUGGCUCCUGAGCAUGAUUCAGAGCAAGUGCAGUGUGCCCUUCACCCCUAUUGAGUUUCACUAUGAGAAUACACGGGCCCAGUUCUUCGUUGAAGACGCCAGUACUGCCUCUGCAUUGAAGGCUGUCAACUAUAAGAUUUUGGAUCGGGAGAACCGAAGGAUAUCUAUCAUCAUCAACUCUUCUGCUCCACCCCACACUAUACUGAAUGAACUGAAGCCAGAACAAGUAGAACAGCUAAAGCUGAUCAUGAGCAAACGAUACGAUGGCUCCCAACAAGCCCUUGACCUCAAAGGCCUCCGUUCAGЖCCCAGAUUUGGUGGCCCAGAACAUUGACGUUGUCCUGAAUCGCAGAAGCUGUAUGGCAGCUACCCUGAGGAUCAUUGAAGAGAACAUCCCUGAGCUAUUGUCCUUGAACUUGAGCAACAACAGGCUGUACAGGCUGGAUGACAUGUCUAGCAUUGUUCAGAAGGCACCCAACCUGAAGAUCCUAAACCUUUCUGGAAAUGAAUUGAAGUCUGAGCGGGAAUUGGACAAGAUAAAGGGGCUGAAGCUAGAAGAGCUCUGGCUCGAUGGAAACUCCCUGUGUGACACCUUCCGAGACCAGUCCACCUACAUCAGCGCCAUUCGCGAACGAUUUCCCAAGUUACUACGCCUGGAUGGCCAUGAGCUACCCCCACCAAUUGCCUUUGAUGUUGAAGCCCCCACGACGUUACCGCCCUGCAAGGGAAGCUAUUUUGGAACAGAAAACUUGAAGAGUCUGGUCUUGCACUUCCUGCAACAGUACUAUGCAAUUUACGACUCUGGAGЖCCGACAAGGGCUCCUGGAUGCCUACCAUGAUGGGGCCUGCUGUUCCCUGAGCAUUCCUUUCAUUCCUCAGAACCCUGCCCGAAGCAGCUUAGCCGAGUAUUUCAAGGAUAGCAGAAAUGUGAAGAAGCUUAAAGЖCCCUACCUUGCGGUUCCGGCUGCUGAAGCACACGCGUCUCAACGUUGUUGCCUUCCUCAAUGAGUUGCCCAAAACCCAGCACGACGUCAAUUCCUUCGUGGUAGACAUAAGCGCCCAGACAAGCACAUUGCUGUGUUUUUCUGUCAAUGGAGUCUUCAAGGAAGUGGACGGAAAGUCCCGGGAUUCUUUGCGAGCCUUCACCCGGACAUUCAUUGCUGUUCCUGCUAGCAAUUCAGGGCUAUGUAUUGUAAAUGAUGAGCUAUUUGUGCGGAAUGCCAGUUCUGAAGAGAUCCAAAGAGCCUUCGCUAUGCCUGCACCCACGCCUUCCPCCAGCCCGGUGCCCACCCUCUCUCCAGAGCAGCAGGAAAUGUUGCAAGCAUUCUCUACCCAGUCUGGCAUGAACCUCGAGUGGUCCCAGAAGUGCCUUCAGGACAACAACUGGGACUACACCAGAUCUGCCCAGGCCUUCACUCAUCUCAAGGCCAAGGGCGAGAUCCCAGAAGUGGCAUUCAUGAAGUGAUCGUAGUCAUGCCUCAGAAGCAGUCCCCCCUGUAAAUAGUCCUUGGAUAUUACCGUCUGGUUGUCGUCUGUCAUCUCCPCCUGUCUGGCCCGAGGCCGCCCCGUGACUGUGЖCCGAGGGAGGGAGGGCUGCCUGAUCCCUCUCCUCGCCUGCCUUCUGGAAGACUUCAGAAGAUUGAGCCUCACUGGUGCCAGGAAGCCAAAGCUUACUUUGUAGAЖCUGACACUAAACUACCCGAAGGЖCUUAGGUGCUUUGUGUACUUAACCCCAGGACCUCCUUACUUUUUAAUAUAAAGAGUGAUGUUGUAUUUCGUGUUCUGCACUUUUUAAUAUAAAGAGUGAUGUUGUA
Sequence (SHORT NAMES ENCODING)	ACUUCGGUCCUGAGCGCUUGGGAGUUAGGUUGUUUGCCGGCGUAGCGGCCAGCGCCUGAGCCCGCCCUUGAUCUUCGCUGUGGCAUGGCGGACGAGGGGAAGUCGUACAGCGAACACGAUGAUGAACGCGUUAAUUUCCCUCAAAGAAAGAAGAAAGGCCGGGGUCCCUUCCGGUGGAAAUAUGGUGAAGGAAACCGUAGGUCUGGAAGAGGCGGUUCUGGUAUUCGGUCUUCCCGCCUUGAGGAAGAUGAUGGAGAUGUGGCAAUGAGUGAUGCCCAGGAUGGUCCCCGAGUACGAUACAACCCCUAUACCACCCGACCUAACCGUCGGGGUGAUACUUGGCAUGAUCGAGAUCGCAUUCAUGUUACUGUGCGGAGAGACAGAGCUCCUCCAGAGAGAGGAGGGGCUGGCACCAGCCAGGAUGGGACCUCAAAGAACUGGUUCAAGAUUACAAUUCCUUAUGGCAGAAAGUAUGACAAGGCAUGGCUCCUGAGCAUGAUUCAGAGCAAGUGCAGUGUGCCCUUCACCCCUAUUGAGUUUCACUAUGAGAAUACACGGGCCCAGUUCUUCGUUGAAGACGCCAGUACUGCCUCUGCAUUGAAGGCUGUCAACUAUAAGAUUUUGGAUCGGGAGAACCGAAGGAUAUCUAUCAUCAUCAACUCUUCUGCUCCACCCCACACUAUACUGAAUGAACUGAAGCCAGAACAAGUAGAACAGCUAAAGCUGAUCAUGAGCAAACGAUACGAUGGCUCCCAACAAGCCCUUGACCUCAAAGGCCUCCGUUCAGm6ACCCAGAUUUGGUGGCCCAGAACAUUGACGUUGUCCUGAAUCGCAGAAGCUGUAUGGCAGCUACCCUGAGGAUCAUUGAAGAGAACAUCCCUGAGCUAUUGUCCUUGAACUUGAGCAACAACAGGCUGUACAGGCUGGAUGACAUGUCUAGCAUUGUUCAGAAGGCACCCAACCUGAAGAUCCUAAACCUUUCUGGAAAUGAAUUGAAGUCUGAGCGGGAAUUGGACAAGAUAAAGGGGCUGAAGCUAGAAGAGCUCUGGCUCGAUGGAAACUCCCUGUGUGACACCUUCCGAGACCAGUCCACCUACAUCAGCGCCAUUCGCGAACGAUUUCCCAAGUUACUACGCCUGGAUGGCCAUGAGCUACCCCCACCAAUUGCCUUUGAUGUUGAAGCCCCCACGACGUUACCGCCCUGCAAGGGAAGCUAUUUUGGAACAGAAAACUUGAAGAGUCUGGUCUUGCACUUCCUGCAACAGUACUAUGCAAUUUACGACUCUGGAGm6ACCGACAAGGGCUCCUGGAUGCCUACCAUGAUGGGGCCUGCUGUUCCCUGAGCAUUCCUUUCAUUCCUCAGAACCCUGCCCGAAGCAGCUUAGCCGAGUAUUUCAAGGAUAGCAGAAAUGUGAAGAAGCUUAAAGm6ACCCUACCUUGCGGUUCCGGCUGCUGAAGCACACGCGUCUCAACGUUGUUGCCUUCCUCAAUGAGUUGCCCAAAACCCAGCACGACGUCAAUUCCUUCGUGGUAGACAUAAGCGCCCAGACAAGCACAUUGCUGUGUUUUUCUGUCAAUGGAGUCUUCAAGGAAGUGGACGGAAAGUCCCGGGAUUCUUUGCGAGCCUUCACCCGGACAUUCAUUGCUGUUCCUGCUAGCAAUUCAGGGCUAUGUAUUGUAAAUGAUGAGCUAUUUGUGCGGAAUGCCAGUUCUGAAGAGAUCCAAAGAGCCUUCGCUAUGCCUGCACCCACGCCUUCCYCCAGCCCGGUGCCCACCCUCUCUCCAGAGCAGCAGGAAAUGUUGCAAGCAUUCUCUACCCAGUCUGGCAUGAACCUCGAGUGGUCCCAGAAGUGCCUUCAGGACAACAACUGGGACUACACCAGAUCUGCCCAGGCCUUCACUCAUCUCAAGGCCAAGGGCGAGAUCCCAGAAGUGGCAUUCAUGAAGUGAUCGUAGUCAUGCCUCAGAAGCAGUCCCCCCUGUAAAUAGUCCUUGGAUAUUACCGUCUGGUUGUCGUCUGUCAUCUCCYCCUGUCUGGCCCGAGGCCGCCCCGUGACUGUGm6ACCGAGGGAGGGAGGGCUGCCUGAUCCCUCUCCUCGCCUGCCUUCUGGAAGACUUCAGAAGAUUGAGCCUCACUGGUGCCAGGAAGCCAAAGCUUACUUUGUAGAm6ACUGACACUAAACUACCCGAAGGm6ACUUAGGUGCUUUGUGUACUUAACCCCAGGACCUCCUUACUUUUUAAUAUAAAGAGUGAUGUUGUAUUUCGUGUUCUGCACUUUUUAAUAUAAAGAGUGAUGUUGUA
Sequence (MODOMICS CODE ENCODING)	ACUUCGGUCCUGAGCGCUUGGGAGUUAGGUUGUUUGCCGGCGUAGCGGCCAGCGCCUGAGCCCGCCCUUGAUCUUCGCUGUGGCAUGGCGGACGAGGGGAAGUCGUACAGCGAACACGAUGAUGAACGCGUUAAUUUCCCUCAAAGAAAGAAGAAAGGCCGGGGUCCCUUCCGGUGGAAAUAUGGUGAAGGAAACCGUAGGUCUGGAAGAGGCGGUUCUGGUAUUCGGUCUUCCCGCCUUGAGGAAGAUGAUGGAGAUGUGGCAAUGAGUGAUGCCCAGGAUGGUCCCCGAGUACGAUACAACCCCUAUACCACCCGACCUAACCGUCGGGGUGAUACUUGGCAUGAUCGAGAUCGCAUUCAUGUUACUGUGCGGAGAGACAGAGCUCCUCCAGAGAGAGGAGGGGCUGGCACCAGCCAGGAUGGGACCUCAAAGAACUGGUUCAAGAUUACAAUUCCUUAUGGCAGAAAGUAUGACAAGGCAUGGCUCCUGAGCAUGAUUCAGAGCAAGUGCAGUGUGCCCUUCACCCCUAUUGAGUUUCACUAUGAGAAUACACGGGCCCAGUUCUUCGUUGAAGACGCCAGUACUGCCUCUGCAUUGAAGGCUGUCAACUAUAAGAUUUUGGAUCGGGAGAACCGAAGGAUAUCUAUCAUCAUCAACUCUUCUGCUCCACCCCACACUAUACUGAAUGAACUGAAGCCAGAACAAGUAGAACAGCUAAAGCUGAUCAUGAGCAAACGAUACGAUGGCUCCCAACAAGCCCUUGACCUCAAAGGCCUCCGUUCAG2000000006ACCCAGAUUUGGUGGCCCAGAACAUUGACGUUGUCCUGAAUCGCAGAAGCUGUAUGGCAGCUACCCUGAGGAUCAUUGAAGAGAACAUCCCUGAGCUAUUGUCCUUGAACUUGAGCAACAACAGGCUGUACAGGCUGGAUGACAUGUCUAGCAUUGUUCAGAAGGCACCCAACCUGAAGAUCCUAAACCUUUCUGGAAAUGAAUUGAAGUCUGAGCGGGAAUUGGACAAGAUAAAGGGGCUGAAGCUAGAAGAGCUCUGGCUCGAUGGAAACUCCCUGUGUGACACCUUCCGAGACCAGUCCACCUACAUCAGCGCCAUUCGCGAACGAUUUCCCAAGUUACUACGCCUGGAUGGCCAUGAGCUACCCCCACCAAUUGCCUUUGAUGUUGAAGCCCCCACGACGUUACCGCCCUGCAAGGGAAGCUAUUUUGGAACAGAAAACUUGAAGAGUCUGGUCUUGCACUUCCUGCAACAGUACUAUGCAAUUUACGACUCUGGAG2000000006ACCGACAAGGGCUCCUGGAUGCCUACCAUGAUGGGGCCUGCUGUUCCCUGAGCAUUCCUUUCAUUCCUCAGAACCCUGCCCGAAGCAGCUUAGCCGAGUAUUUCAAGGAUAGCAGAAAUGUGAAGAAGCUUAAAG2000000006ACCCUACCUUGCGGUUCCGGCUGCUGAAGCACACGCGUCUCAACGUUGUUGCCUUCCUCAAUGAGUUGCCCAAAACCCAGCACGACGUCAAUUCCUUCGUGGUAGACAUAAGCGCCCAGACAAGCACAUUGCUGUGUUUUUCUGUCAAUGGAGUCUUCAAGGAAGUGGACGGAAAGUCCCGGGAUUCUUUGCGAGCCUUCACCCGGACAUUCAUUGCUGUUCCUGCUAGCAAUUCAGGGCUAUGUAUUGUAAAUGAUGAGCUAUUUGUGCGGAAUGCCAGUUCUGAAGAGAUCCAAAGAGCCUUCGCUAUGCCUGCACCCACGCCUUCC2000000009UCCAGCCCGGUGCCCACCCUCUCUCCAGAGCAGCAGGAAAUGUUGCAAGCAUUCUCUACCCAGUCUGGCAUGAACCUCGAGUGGUCCCAGAAGUGCCUUCAGGACAACAACUGGGACUACACCAGAUCUGCCCAGGCCUUCACUCAUCUCAAGGCCAAGGGCGAGAUCCCAGAAGUGGCAUUCAUGAAGUGAUCGUAGUCAUGCCUCAGAAGCAGUCCCCCCUGUAAAUAGUCCUUGGAUAUUACCGUCUGGUUGUCGUCUGUCAUCUCC2000000009UCCUGUCUGGCCCGAGGCCGCCCCGUGACUGUG2000000006ACCGAGGGAGGGAGGGCUGCCUGAUCCCUCUCCUCGCCUGCCUUCUGGAAGACUUCAGAAGAUUGAGCCUCACUGGUGCCAGGAAGCCAAAGCUUACUUUGUAGA2000000006ACUGACACUAAACUACCCGAAGG2000000006ACUUAGGUGCUUUGUGUACUUAACCCCAGGACCUCCUUACUUUUUAAUAUAAAGAGUGAUGUUGUAUUUCGUGUUCUGCACUUUUUAAUAUAAAGAGUGAUGUUGUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	788	1289	1424	1753	2023	2056	2161	2184
Modification Positions	m6A	m6A	m6A	Y	Y	m6A	m6A	m6A
Genomic Coordinates	11:62801567:-	11:62796541:-	11:62796292:-	11:62794349:-	11:62792397:-	11:62792364:-	11:62792259:-	11:62792236:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	KTLz8piFYdwC WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 8cMbzB4aD5Se BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8