Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000528770
Gene ID: ENSG00000177106
Gene Name: EPS8L2
Sequence (UNICHARACTER ENCODING) AGAAGAUUCGGCAGCGGCAGUCCAPCCUGCCUCCUCCCCAGGGCCCGGCGCCCAUCCCCUUCCAGCACCGCGGCGGGGAUUCCCCGGAGGCCAAGAAUCGCGUGGGCCCGCAGGUGCCACUCAGCGAGCCAGGUUUCCGCCGUCGGGAGUCGCAGGAGGAGCCGCGGGCCGUGCUGGCUCAGAAGAUAGAGAAGGAGACGCAAAUCCUCAACUGCGCCCUGGACGACAUCGAGUGGUUUGUGGCCCGGCUGCAGAAGGCAGCCGAGGCUUUCAAGCAGCUGAACCAGCGGAAAAAGGGGAAGAAGAAGGGCAAGAAGGCGCCAGCAGGCAAAGCUGCAGAAGCACAPCCAGAACCCCAGCGCCGCGGAGCUCGUGCACUUCCUCUUCGGGCCUCUGGACCUGAUCGUCAACACCUGCAGUGGCCCAGACAUCGCACGCUCCGUCUCCUGCCCACUGCUCUCCCGAGAUGCCGUGGACUUCCUGCGCGGCCACCUGGUCCCUAAGGAGAUGUCGCUGUGGGAGUCACUGGGAGAGAGCUGGAUGCGGCCCCGUUCCGAGUGGCCGCGGGAGCCACAGGUGCCCCUCUACGUGCCCAAGUUCCACAGCGGCUGGGAGCCUCCUGUGGAUGUGCUGCAGGAGGCCCCCUGGGAGGUGGAGGGGCUGGCGUCUGCCCCCAUCGAGGAGGUGAGUCCAGUGAGCCGACAGUCCAUAAGAAACUCCCAGAAGCACAGCCCCACUUCAGAGCCCACCCCCCCGGGGGAUGCCCUACCACCAGUCAGCUCCCCACAUACUCACAGGGGCUACCAGCCAACACCAGCCAUGGCCAAGUACGUCAAGAUCCUGUAUGACUUCACAGCCCGAAAUGCCAACGAGCUAUCGGUGCUCAAGGAUGAGGUCCUAGAGGUGCUGGAGGACGGCCGGCAGUGGUGGAAGCUGCGCAGCCGCAGCGGCCAGGCGGGGUACGUGCCCUGCAACAPCCUAGGCGAGGCGCGACCGGAGGACGCCGGCGCCCCGUUCGAGCAGGCCGGUCAGAAGUACUGGGGCCCCGCCAGCCCGACCCACAAGCUACCCCCAAGCUUCCCGGGGAACAAAGACGAGCUCAUGCAGCACAUGGACGAGGUCAACGACGAGCUCAUCCGGAAAAUCAGCAACAUCAGGGCGCAGCCACAGAGGCACUUCCGCGUGGAGCGCAGCCAGCCCGUGAGCCAGCCGCUCACCUACGAGUCGGGUCCGGACGAGGUCCGCGCCUGGCUGGAAGCCAAGGCCUUCAGCCCGCGGAUCGUGGAGAACCUGGGCAPCCUGACCGGGCCGCAGCUCUUCUCCCUCAACAAGGAGGAGCUGAAGAAAGUGUGCGGCGAGGAGGGCGUCCGCGUGUACAGCCAGCUCACCAUGCAGAAGGCCUUCCUGGAGAAGCAGCAAAGUGGGUCGGAGCUGGAAGAACUCAUGAACAAGUUUCAUUCCAUGAAUCAGAGGAGGGGGGAGGACAGCUAGGCCCAGCUGCCUUGGGCUGGGGCCUGCGGAGGGGAAGCCCACCCACAAUGCAUGGAGUAUUAUUUUUAUAUGUGUAUGUAUUUUGUAUCAAGGACACGGAGGGGGUGUGGUGCUGGCUAGAGGUCCCUGCCCCUGUCUGGAGGCACAACGCCCAPCCUUAGGCCAAACAGUACCCAAGGCCUCAGCCCACACCAAGACUAAUCUCAGCCAAACCUGCUGCUUGGUGGUGCCAGCCCCUUGUCCACCUUCUCUUGAGGCCACAGAACUCCCUGGGGCUGGGGCCUCUUUCUCUGGCCUCCCCUGUGCACCUGGGGGGUCCUGGCCCCUGUGAUGCUCCCCCAPCCCCACCCACUUCUACAPCCAUCCACACCCCAGGGUGAGCUGGAGCUCCAGGCUGGCCAGGCUGAACCUCGCACACACGCAGAGUUCUGCUCCCUGAGGGGGGCCCGGGAGGGGCUCCAGCAGGAGGCCGUGGGUGCCAUUCGGGGGAAAGUGGGGGAACGACACACACUUCACCUGCAAGGGCCGACAACGCAGGGGACACCGUGCCGGCUUCAGACACUCCCAGCGCCCACUCUUACAGGCCCAGGЖCUGGAGCUUUCUCUGGCCAAGUUUCAGGCCAAUGAUCCCCGCAUGGUGUUGGGGGUGCUGGUGUGUCUUGGUGCCUGGЖCUUGAGUCUCACCCUACAGAUGAGAGGUGGCUGAGGCACCAGGGCUAAGCAAUUAAACCAGUUAAGUCUCCC
Sequence (SHORT NAMES ENCODING) AGAAGAUUCGGCAGCGGCAGUCCAYCCUGCCUCCUCCCCAGGGCCCGGCGCCCAUCCCCUUCCAGCACCGCGGCGGGGAUUCCCCGGAGGCCAAGAAUCGCGUGGGCCCGCAGGUGCCACUCAGCGAGCCAGGUUUCCGCCGUCGGGAGUCGCAGGAGGAGCCGCGGGCCGUGCUGGCUCAGAAGAUAGAGAAGGAGACGCAAAUCCUCAACUGCGCCCUGGACGACAUCGAGUGGUUUGUGGCCCGGCUGCAGAAGGCAGCCGAGGCUUUCAAGCAGCUGAACCAGCGGAAAAAGGGGAAGAAGAAGGGCAAGAAGGCGCCAGCAGGCAAAGCUGCAGAAGCACAYCCAGAACCCCAGCGCCGCGGAGCUCGUGCACUUCCUCUUCGGGCCUCUGGACCUGAUCGUCAACACCUGCAGUGGCCCAGACAUCGCACGCUCCGUCUCCUGCCCACUGCUCUCCCGAGAUGCCGUGGACUUCCUGCGCGGCCACCUGGUCCCUAAGGAGAUGUCGCUGUGGGAGUCACUGGGAGAGAGCUGGAUGCGGCCCCGUUCCGAGUGGCCGCGGGAGCCACAGGUGCCCCUCUACGUGCCCAAGUUCCACAGCGGCUGGGAGCCUCCUGUGGAUGUGCUGCAGGAGGCCCCCUGGGAGGUGGAGGGGCUGGCGUCUGCCCCCAUCGAGGAGGUGAGUCCAGUGAGCCGACAGUCCAUAAGAAACUCCCAGAAGCACAGCCCCACUUCAGAGCCCACCCCCCCGGGGGAUGCCCUACCACCAGUCAGCUCCCCACAUACUCACAGGGGCUACCAGCCAACACCAGCCAUGGCCAAGUACGUCAAGAUCCUGUAUGACUUCACAGCCCGAAAUGCCAACGAGCUAUCGGUGCUCAAGGAUGAGGUCCUAGAGGUGCUGGAGGACGGCCGGCAGUGGUGGAAGCUGCGCAGCCGCAGCGGCCAGGCGGGGUACGUGCCCUGCAACAYCCUAGGCGAGGCGCGACCGGAGGACGCCGGCGCCCCGUUCGAGCAGGCCGGUCAGAAGUACUGGGGCCCCGCCAGCCCGACCCACAAGCUACCCCCAAGCUUCCCGGGGAACAAAGACGAGCUCAUGCAGCACAUGGACGAGGUCAACGACGAGCUCAUCCGGAAAAUCAGCAACAUCAGGGCGCAGCCACAGAGGCACUUCCGCGUGGAGCGCAGCCAGCCCGUGAGCCAGCCGCUCACCUACGAGUCGGGUCCGGACGAGGUCCGCGCCUGGCUGGAAGCCAAGGCCUUCAGCCCGCGGAUCGUGGAGAACCUGGGCAYCCUGACCGGGCCGCAGCUCUUCUCCCUCAACAAGGAGGAGCUGAAGAAAGUGUGCGGCGAGGAGGGCGUCCGCGUGUACAGCCAGCUCACCAUGCAGAAGGCCUUCCUGGAGAAGCAGCAAAGUGGGUCGGAGCUGGAAGAACUCAUGAACAAGUUUCAUUCCAUGAAUCAGAGGAGGGGGGAGGACAGCUAGGCCCAGCUGCCUUGGGCUGGGGCCUGCGGAGGGGAAGCCCACCCACAAUGCAUGGAGUAUUAUUUUUAUAUGUGUAUGUAUUUUGUAUCAAGGACACGGAGGGGGUGUGGUGCUGGCUAGAGGUCCCUGCCCCUGUCUGGAGGCACAACGCCCAYCCUUAGGCCAAACAGUACCCAAGGCCUCAGCCCACACCAAGACUAAUCUCAGCCAAACCUGCUGCUUGGUGGUGCCAGCCCCUUGUCCACCUUCUCUUGAGGCCACAGAACUCCCUGGGGCUGGGGCCUCUUUCUCUGGCCUCCCCUGUGCACCUGGGGGGUCCUGGCCCCUGUGAUGCUCCCCCAYCCCCACCCACUUCUACAYCCAUCCACACCCCAGGGUGAGCUGGAGCUCCAGGCUGGCCAGGCUGAACCUCGCACACACGCAGAGUUCUGCUCCCUGAGGGGGGCCCGGGAGGGGCUCCAGCAGGAGGCCGUGGGUGCCAUUCGGGGGAAAGUGGGGGAACGACACACACUUCACCUGCAAGGGCCGACAACGCAGGGGACACCGUGCCGGCUUCAGACACUCCCAGCGCCCACUCUUACAGGCCCAGGm6ACUGGAGCUUUCUCUGGCCAAGUUUCAGGCCAAUGAUCCCCGCAUGGUGUUGGGGGUGCUGGUGUGUCUUGGUGCCUGGm6ACUUGAGUCUCACCCUACAGAUGAGAGGUGGCUGAGGCACCAGGGCUAAGCAAUUAAACCAGUUAAGUCUCCC
Sequence (MODOMICS CODE ENCODING) AGAAGAUUCGGCAGCGGCAGUCCA2000000009UCCUGCCUCCUCCCCAGGGCCCGGCGCCCAUCCCCUUCCAGCACCGCGGCGGGGAUUCCCCGGAGGCCAAGAAUCGCGUGGGCCCGCAGGUGCCACUCAGCGAGCCAGGUUUCCGCCGUCGGGAGUCGCAGGAGGAGCCGCGGGCCGUGCUGGCUCAGAAGAUAGAGAAGGAGACGCAAAUCCUCAACUGCGCCCUGGACGACAUCGAGUGGUUUGUGGCCCGGCUGCAGAAGGCAGCCGAGGCUUUCAAGCAGCUGAACCAGCGGAAAAAGGGGAAGAAGAAGGGCAAGAAGGCGCCAGCAGGCAAAGCUGCAGAAGCACA2000000009UCCAGAACCCCAGCGCCGCGGAGCUCGUGCACUUCCUCUUCGGGCCUCUGGACCUGAUCGUCAACACCUGCAGUGGCCCAGACAUCGCACGCUCCGUCUCCUGCCCACUGCUCUCCCGAGAUGCCGUGGACUUCCUGCGCGGCCACCUGGUCCCUAAGGAGAUGUCGCUGUGGGAGUCACUGGGAGAGAGCUGGAUGCGGCCCCGUUCCGAGUGGCCGCGGGAGCCACAGGUGCCCCUCUACGUGCCCAAGUUCCACAGCGGCUGGGAGCCUCCUGUGGAUGUGCUGCAGGAGGCCCCCUGGGAGGUGGAGGGGCUGGCGUCUGCCCCCAUCGAGGAGGUGAGUCCAGUGAGCCGACAGUCCAUAAGAAACUCCCAGAAGCACAGCCCCACUUCAGAGCCCACCCCCCCGGGGGAUGCCCUACCACCAGUCAGCUCCCCACAUACUCACAGGGGCUACCAGCCAACACCAGCCAUGGCCAAGUACGUCAAGAUCCUGUAUGACUUCACAGCCCGAAAUGCCAACGAGCUAUCGGUGCUCAAGGAUGAGGUCCUAGAGGUGCUGGAGGACGGCCGGCAGUGGUGGAAGCUGCGCAGCCGCAGCGGCCAGGCGGGGUACGUGCCCUGCAACA2000000009UCCUAGGCGAGGCGCGACCGGAGGACGCCGGCGCCCCGUUCGAGCAGGCCGGUCAGAAGUACUGGGGCCCCGCCAGCCCGACCCACAAGCUACCCCCAAGCUUCCCGGGGAACAAAGACGAGCUCAUGCAGCACAUGGACGAGGUCAACGACGAGCUCAUCCGGAAAAUCAGCAACAUCAGGGCGCAGCCACAGAGGCACUUCCGCGUGGAGCGCAGCCAGCCCGUGAGCCAGCCGCUCACCUACGAGUCGGGUCCGGACGAGGUCCGCGCCUGGCUGGAAGCCAAGGCCUUCAGCCCGCGGAUCGUGGAGAACCUGGGCA2000000009UCCUGACCGGGCCGCAGCUCUUCUCCCUCAACAAGGAGGAGCUGAAGAAAGUGUGCGGCGAGGAGGGCGUCCGCGUGUACAGCCAGCUCACCAUGCAGAAGGCCUUCCUGGAGAAGCAGCAAAGUGGGUCGGAGCUGGAAGAACUCAUGAACAAGUUUCAUUCCAUGAAUCAGAGGAGGGGGGAGGACAGCUAGGCCCAGCUGCCUUGGGCUGGGGCCUGCGGAGGGGAAGCCCACCCACAAUGCAUGGAGUAUUAUUUUUAUAUGUGUAUGUAUUUUGUAUCAAGGACACGGAGGGGGUGUGGUGCUGGCUAGAGGUCCCUGCCCCUGUCUGGAGGCACAACGCCCA2000000009UCCUUAGGCCAAACAGUACCCAAGGCCUCAGCCCACACCAAGACUAAUCUCAGCCAAACCUGCUGCUUGGUGGUGCCAGCCCCUUGUCCACCUUCUCUUGAGGCCACAGAACUCCCUGGGGCUGGGGCCUCUUUCUCUGGCCUCCCCUGUGCACCUGGGGGGUCCUGGCCCCUGUGAUGCUCCCCCA2000000009UCCCCACCCACUUCUACA2000000009UCCAUCCACACCCCAGGGUGAGCUGGAGCUCCAGGCUGGCCAGGCUGAACCUCGCACACACGCAGAGUUCUGCUCCCUGAGGGGGGCCCGGGAGGGGCUCCAGCAGGAGGCCGUGGGUGCCAUUCGGGGGAAAGUGGGGGAACGACACACACUUCACCUGCAAGGGCCGACAACGCAGGGGACACCGUGCCGGCUUCAGACACUCCCAGCGCCCACUCUUACAGGCCCAGG2000000006ACUGGAGCUUUCUCUGGCCAAGUUUCAGGCCAAUGAUCCCCGCAUGGUGUUGGGGGUGCUGGUGUGUCUUGGUGCCUGG2000000006ACUUGAGUCUCACCCUACAGAUGAGAGGUGGCUGAGGCACCAGGGCUAAGCAAUUAAACCAGUUAAGUCUCCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 25 347 977 1298 1646 1833 1851 2082 2161
Modification Positions Y Y Y Y Y Y Y m6A m6A
Genomic Coordinates 11:721099:+ 11:722110:+ 11:725801:+ 11:726639:+ 11:727136:+ 11:727323:+ 11:727341:+ 11:727572:+ 11:727651:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KENzb7mwdBd9
Lny8GcCeVGc9
PF5iqBNSbHaa
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
PF5iqBNSbHaa
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr