General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000528020
Gene ID:	ENSG00000109861
Gene Name:	CTSC
Sequence (UNICHARACTER ENCODING)	AGCGCUCGGCUUCCUGGACCACAAGAAAAAAAAGUAGUGGUGUACCUUCAGAAGCUGGAUACAGCAUAUGAUGACCUUGGCAAUUCUGGCCAUUUCACCAUCAUUUACAACCAAGGCUUUGAGAUUGUGUUGAAUGACUACAAGUGGUUUGCCUUUUUUAAGGAUGUCACUGAUUUUAUCAGUCAUUUGUUCAUGCAGCUGGGAACUGUGGGGAUAUAUGAUUUGCCACAUCUGAGGAACAAACUGGUUAUUAAAUAGAGCAUCUGUUGAGGGЖCUCUUUUAAAACCACAGCCAUGAЖCAGACGUUGGGGCUAAGAGЖCAGAGCAGCCUGCGACAGUGUGGЖCCUACCUGUAGCAGCUAGCAAAGGCCUCUAGCAGCUACAGUCCCUUCUGGAGUCUPUAUUUGCAUGCAAAAUGCAAAGGAGUCCUGGUGЖCCUACCPCCAAGGCAGCUGCCCUCCUGAACACUCCCUUGGAAAACAGUAAACAUCAUUUUGGAAUGUGAACAACCAGAGЖCUACACAGGAGAAAGGAAAAAAAAAUUCUGAAGAUGCAAAAUCUUGGGUGGCUUCACCGUUCAGUUUUUUAAUAAAAGGAACAAUAUACAACACGUUGUUCUUUUUCUCUUUUGAAAUCCCUUCUAUUACAGUGAUUUUUUUCUAAGAUUGUCAGGA
Sequence (SHORT NAMES ENCODING)	AGCGCUCGGCUUCCUGGACCACAAGAAAAAAAAGUAGUGGUGUACCUUCAGAAGCUGGAUACAGCAUAUGAUGACCUUGGCAAUUCUGGCCAUUUCACCAUCAUUUACAACCAAGGCUUUGAGAUUGUGUUGAAUGACUACAAGUGGUUUGCCUUUUUUAAGGAUGUCACUGAUUUUAUCAGUCAUUUGUUCAUGCAGCUGGGAACUGUGGGGAUAUAUGAUUUGCCACAUCUGAGGAACAAACUGGUUAUUAAAUAGAGCAUCUGUUGAGGGm6ACUCUUUUAAAACCACAGCCAUGAm6ACAGACGUUGGGGCUAAGAGm6ACAGAGCAGCCUGCGACAGUGUGGm6ACCUACCUGUAGCAGCUAGCAAAGGCCUCUAGCAGCUACAGUCCCUUCUGGAGUCUYUAUUUGCAUGCAAAAUGCAAAGGAGUCCUGGUGm6ACCUACCYCCAAGGCAGCUGCCCUCCUGAACACUCCCUUGGAAAACAGUAAACAUCAUUUUGGAAUGUGAACAACCAGAGm6ACUACACAGGAGAAAGGAAAAAAAAAUUCUGAAGAUGCAAAAUCUUGGGUGGCUUCACCGUUCAGUUUUUUAAUAAAAGGAACAAUAUACAACACGUUGUUCUUUUUCUCUUUUGAAAUCCCUUCUAUUACAGUGAUUUUUUUCUAAGAUUGUCAGGA
Sequence (MODOMICS CODE ENCODING)	AGCGCUCGGCUUCCUGGACCACAAGAAAAAAAAGUAGUGGUGUACCUUCAGAAGCUGGAUACAGCAUAUGAUGACCUUGGCAAUUCUGGCCAUUUCACCAUCAUUUACAACCAAGGCUUUGAGAUUGUGUUGAAUGACUACAAGUGGUUUGCCUUUUUUAAGGAUGUCACUGAUUUUAUCAGUCAUUUGUUCAUGCAGCUGGGAACUGUGGGGAUAUAUGAUUUGCCACAUCUGAGGAACAAACUGGUUAUUAAAUAGAGCAUCUGUUGAGGG2000000006ACUCUUUUAAAACCACAGCCAUGA2000000006ACAGACGUUGGGGCUAAGAG2000000006ACAGAGCAGCCUGCGACAGUGUGG2000000006ACCUACCUGUAGCAGCUAGCAAAGGCCUCUAGCAGCUACAGUCCCUUCUGGAGUCU2000000009UUAUUUGCAUGCAAAAUGCAAAGGAGUCCUGGUG2000000006ACCUACC2000000009UCCAAGGCAGCUGCCCUCCUGAACACUCCCUUGGAAAACAGUAAACAUCAUUUUGGAAUGUGAACAACCAGAG2000000006ACUACACAGGAGAAAGGAAAAAAAAAUUCUGAAGAUGCAAAAUCUUGGGUGGCUUCACCGUUCAGUUUUUUAAUAAAAGGAACAAUAUACAACACGUUGUUCUUUUUCUCUUUUGAAAUCCCUUCUAUUACAGUGAUUUUUUUCUAAGAUUGUCAGGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	274	298	318	342	398	432	439	512
Modification Positions	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A
Genomic Coordinates	11:88326417:-	11:88326393:-	11:88326373:-	11:88326349:-	11:88326293:-	11:88326259:-	11:88326252:-	11:88326179:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se ArijeGVTwYBw WiQcrNTGZHPT BsCW7emuRX7M KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	6AyXsheySjfx gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL Lny8GcCeVGc9 LZJKems7W2wi BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se WiQcrNTGZHPT BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	8cMbzB4aD5Se ArijeGVTwYBw BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 93arJtwJmuS9 BkoLW2CBToyL BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8