General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000710934
Gene ID:	ENSG00000251562
Gene Name:	MALAT1
Sequence (UNICHARACTER ENCODING)	ЖGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUACUUAAAAAAUAUAGUCAAUAGGUUACUAAGAUAUUGCUUAGCGUUAAGUUUUUAACGUAAUUUUAAUAGCUUAAGAUUUUAAGAGAAAAUAUGAAGACUUAGAAGAGUAGCAUGAGGAAGGAAAAGAUAAAAGGUUUCUAAAACAUGACGGAGGUUGAGAUGAAGCUUCUUCAUGGAGUAAAAAAUGUAUUUAAAAGAAAAUUGAGAGAAAGGACUACAGAGCCCCGAAUUAAUACCAAUAGAAGGGCAAUGCUUUUAGAUUAAAAUGAAGGUGACUUAAЖCAGCUUAAAGUUUAGUUUAAAAGUUGUAGGUGAUUAAAAUAAUUUGAAGGCGAUCUUUUAAAAAGAGAUUAAЖCCGAAGGUGAUUAAAAGACCUUGAAAUCCAUGACGCAGGGAGAAUUGCGUCAUUUAAAGCCUAGUUAACGCAUUUACUAAACGCAGACGAAAAUGGAAAGAUUAAUUGGGAGUGGUAGGAUGAAACAAUUUGGAGAAGAUAGAAGUUUGAAGUGGAAAACUGGAAGЖCAGAAGUACGGGAAGGCGAAGAAAAGAAUAGAGAAGAUAGGGAAAUUAGAAGAUAAAAACAUACUUUUAGAAGAAAAAAGAUAAAUUUAAACCUGAAAAGUAGGAAGCAGAAGAAAAAAGЖCAAGCUAGGAAACAAAAAGCUAAGGGCAAAAUGUACAAACUUAGAAGAAAAUUGGAAGAUAGAAACAAGAUAGAAAAUGAAAAUAUUGUCAAGAGUUUCAGAUAGAAAAUGAAAAACAAGCUAAGACAAGUAUUGGAGAAGUAUAGAAGAUAGAAAAAUAUAAAGCCAAAAAUUGGAUAAAAUAGCACUGAAAAAAUGAGGAAAUUAUUGGUAACCAAUUUAUUUUAAAAGCCCAUCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGUAAAGCUUGAGAAGAUGAGGGUGUUUACGUAGACCAGAACCAAUUUAGAAGAAUACUUGAAGCUAGAAGGGGAAGUUGGUUAAAAAUCACAUCAAAAAGCUACUAAAAGGЖCUGGUGUAAUUUAAAAAAAACUAAGGCAGAAGGCUUUUGGAAGAGUUAGAAGAAUUUGGAAGGCCUUAAAUAUAGUAGCUUAGUUUGAAAAAUGUGAAGGЖCUUUCGUAACGGAAGUAAUUCAAGAUCAAGAGUAAUUACCAACUUAAUGUUUUUGCAUUGGЖCUUUGAGUUAAGAUUAUUUUUUAAAUCCUGAGGЖCUAGCAUUAAUUGACAGCUGACCCAGGUGCUACACAGAAGUGGAUUCAGUGAAUCUAGGAAGЖCAGCAGCAGACAGGAUUCCAGGAACCAGUGUUUGAUGAAGCUAGGЖCUGAGGAGCAAGCGAGCAAGCAGCAGUUCGUGGUGAAGAUAGGAAAAGAGUCCAGGAGCCAGUGCGAUUUGGUGAAGGAAGCUAGGAAGAAGGAAGGAGCGCUAACGAUUUGGUGGUGAAGCUAGGAAAAAGGAUUCCAGGAAGGAGCGAGUGCAAUUUGGUGAUGAAGGUAGCAGGCGGCUUGGCUUGGCAACCACACGGAGGAGGCGAGCAGGCGUUGUGCGUAGAGGAUCCUAGACCAGCAUGCCAGUGUGCCAAGGCCACAGGGAAAGCGAGUGGUUGGUAAAAAUCCGUGAGGUCGGCAAUAUGUUGUUUUUCUGGAЖCUUACUUAUGUGUAGGAGAAAUACUUUUCCAUUGUUUAACUGCAAAACAAGAUGUUAAGGUAUGCUUCAAAAAUUUUGUAAAUUGUUUAUUUUAAACUUAUCUGUUUGUAAAUUGUAACUGAUUAAGAAUUGUGAUAGUUCAGCUUGAAUGUCUCUUAGAGGGUGGGCUUUUGUUGAUGAGGGAGGGGAAACUUUUUUUUUUUCUAUAGACUUUUUUCAGAUAACAUCUUCUGAGUCAUAACCAGCCUGGCAGUAUGAUGGCCUAGAUGCAGAGAAAACAGCUCCUUGGUGAAUUGAUAAGUAAAGGCAGAAAAGAUUAUAUGUCAUACCUCCAUUGGGGAAUAAGCAUAACCCUGAGAUUCUUACUACUGAUGAGAACAUUAUCUGCAUAUGCCAAAAAAUUUUAAGCAAAUGAAAGCUACCAAUUUAAAGUUACGGAAUCUACCAUUUUAAAGUUAAUUGCUUGUCAAGCUAUAACCACAAAAAUAAUGAAUUGAUGAGAAAUACAAUGAAGAGGCAAUGUCCAUCUCAAAAUACUGCUUUUACAAAAGCAGAAUAAAAGCGAAAA
Sequence (SHORT NAMES ENCODING)	m6AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUACUUAAAAAAUAUAGUCAAUAGGUUACUAAGAUAUUGCUUAGCGUUAAGUUUUUAACGUAAUUUUAAUAGCUUAAGAUUUUAAGAGAAAAUAUGAAGACUUAGAAGAGUAGCAUGAGGAAGGAAAAGAUAAAAGGUUUCUAAAACAUGACGGAGGUUGAGAUGAAGCUUCUUCAUGGAGUAAAAAAUGUAUUUAAAAGAAAAUUGAGAGAAAGGACUACAGAGCCCCGAAUUAAUACCAAUAGAAGGGCAAUGCUUUUAGAUUAAAAUGAAGGUGACUUAAm6ACAGCUUAAAGUUUAGUUUAAAAGUUGUAGGUGAUUAAAAUAAUUUGAAGGCGAUCUUUUAAAAAGAGAUUAAm6ACCGAAGGUGAUUAAAAGACCUUGAAAUCCAUGACGCAGGGAGAAUUGCGUCAUUUAAAGCCUAGUUAACGCAUUUACUAAACGCAGACGAAAAUGGAAAGAUUAAUUGGGAGUGGUAGGAUGAAACAAUUUGGAGAAGAUAGAAGUUUGAAGUGGAAAACUGGAAGm6ACAGAAGUACGGGAAGGCGAAGAAAAGAAUAGAGAAGAUAGGGAAAUUAGAAGAUAAAAACAUACUUUUAGAAGAAAAAAGAUAAAUUUAAACCUGAAAAGUAGGAAGCAGAAGAAAAAAGm6ACAAGCUAGGAAACAAAAAGCUAAGGGCAAAAUGUACAAACUUAGAAGAAAAUUGGAAGAUAGAAACAAGAUAGAAAAUGAAAAUAUUGUCAAGAGUUUCAGAUAGAAAAUGAAAAACAAGCUAAGACAAGUAUUGGAGAAGUAUAGAAGAUAGAAAAAUAUAAAGCCAAAAAUUGGAUAAAAUAGCACUGAAAAAAUGAGGAAAUUAUUGGUAACCAAUUUAUUUUAAAAGCCCAUCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGUAAAGCUUGAGAAGAUGAGGGUGUUUACGUAGACCAGAACCAAUUUAGAAGAAUACUUGAAGCUAGAAGGGGAAGUUGGUUAAAAAUCACAUCAAAAAGCUACUAAAAGGm6ACUGGUGUAAUUUAAAAAAAACUAAGGCAGAAGGCUUUUGGAAGAGUUAGAAGAAUUUGGAAGGCCUUAAAUAUAGUAGCUUAGUUUGAAAAAUGUGAAGGm6ACUUUCGUAACGGAAGUAAUUCAAGAUCAAGAGUAAUUACCAACUUAAUGUUUUUGCAUUGGm6ACUUUGAGUUAAGAUUAUUUUUUAAAUCCUGAGGm6ACUAGCAUUAAUUGACAGCUGACCCAGGUGCUACACAGAAGUGGAUUCAGUGAAUCUAGGAAGm6ACAGCAGCAGACAGGAUUCCAGGAACCAGUGUUUGAUGAAGCUAGGm6ACUGAGGAGCAAGCGAGCAAGCAGCAGUUCGUGGUGAAGAUAGGAAAAGAGUCCAGGAGCCAGUGCGAUUUGGUGAAGGAAGCUAGGAAGAAGGAAGGAGCGCUAACGAUUUGGUGGUGAAGCUAGGAAAAAGGAUUCCAGGAAGGAGCGAGUGCAAUUUGGUGAUGAAGGUAGCAGGCGGCUUGGCUUGGCAACCACACGGAGGAGGCGAGCAGGCGUUGUGCGUAGAGGAUCCUAGACCAGCAUGCCAGUGUGCCAAGGCCACAGGGAAAGCGAGUGGUUGGUAAAAAUCCGUGAGGUCGGCAAUAUGUUGUUUUUCUGGAm6ACUUACUUAUGUGUAGGAGAAAUACUUUUCCAUUGUUUAACUGCAAAACAAGAUGUUAAGGUAUGCUUCAAAAAUUUUGUAAAUUGUUUAUUUUAAACUUAUCUGUUUGUAAAUUGUAACUGAUUAAGAAUUGUGAUAGUUCAGCUUGAAUGUCUCUUAGAGGGUGGGCUUUUGUUGAUGAGGGAGGGGAAACUUUUUUUUUUUCUAUAGACUUUUUUCAGAUAACAUCUUCUGAGUCAUAACCAGCCUGGCAGUAUGAUGGCCUAGAUGCAGAGAAAACAGCUCCUUGGUGAAUUGAUAAGUAAAGGCAGAAAAGAUUAUAUGUCAUACCUCCAUUGGGGAAUAAGCAUAACCCUGAGAUUCUUACUACUGAUGAGAACAUUAUCUGCAUAUGCCAAAAAAUUUUAAGCAAAUGAAAGCUACCAAUUUAAAGUUACGGAAUCUACCAUUUUAAAGUUAAUUGCUUGUCAAGCUAUAACCACAAAAAUAAUGAAUUGAUGAGAAAUACAAUGAAGAGGCAAUGUCCAUCUCAAAAUACUGCUUUUACAAAAGCAGAAUAAAAGCGAAAA
Sequence (MODOMICS CODE ENCODING)	2000000006AGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUACUUAAAAAAUAUAGUCAAUAGGUUACUAAGAUAUUGCUUAGCGUUAAGUUUUUAACGUAAUUUUAAUAGCUUAAGAUUUUAAGAGAAAAUAUGAAGACUUAGAAGAGUAGCAUGAGGAAGGAAAAGAUAAAAGGUUUCUAAAACAUGACGGAGGUUGAGAUGAAGCUUCUUCAUGGAGUAAAAAAUGUAUUUAAAAGAAAAUUGAGAGAAAGGACUACAGAGCCCCGAAUUAAUACCAAUAGAAGGGCAAUGCUUUUAGAUUAAAAUGAAGGUGACUUAA2000000006ACAGCUUAAAGUUUAGUUUAAAAGUUGUAGGUGAUUAAAAUAAUUUGAAGGCGAUCUUUUAAAAAGAGAUUAA2000000006ACCGAAGGUGAUUAAAAGACCUUGAAAUCCAUGACGCAGGGAGAAUUGCGUCAUUUAAAGCCUAGUUAACGCAUUUACUAAACGCAGACGAAAAUGGAAAGAUUAAUUGGGAGUGGUAGGAUGAAACAAUUUGGAGAAGAUAGAAGUUUGAAGUGGAAAACUGGAAG2000000006ACAGAAGUACGGGAAGGCGAAGAAAAGAAUAGAGAAGAUAGGGAAAUUAGAAGAUAAAAACAUACUUUUAGAAGAAAAAAGAUAAAUUUAAACCUGAAAAGUAGGAAGCAGAAGAAAAAAG2000000006ACAAGCUAGGAAACAAAAAGCUAAGGGCAAAAUGUACAAACUUAGAAGAAAAUUGGAAGAUAGAAACAAGAUAGAAAAUGAAAAUAUUGUCAAGAGUUUCAGAUAGAAAAUGAAAAACAAGCUAAGACAAGUAUUGGAGAAGUAUAGAAGAUAGAAAAAUAUAAAGCCAAAAAUUGGAUAAAAUAGCACUGAAAAAAUGAGGAAAUUAUUGGUAACCAAUUUAUUUUAAAAGCCCAUCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGUAAAGCUUGAGAAGAUGAGGGUGUUUACGUAGACCAGAACCAAUUUAGAAGAAUACUUGAAGCUAGAAGGGGAAGUUGGUUAAAAAUCACAUCAAAAAGCUACUAAAAGG2000000006ACUGGUGUAAUUUAAAAAAAACUAAGGCAGAAGGCUUUUGGAAGAGUUAGAAGAAUUUGGAAGGCCUUAAAUAUAGUAGCUUAGUUUGAAAAAUGUGAAGG2000000006ACUUUCGUAACGGAAGUAAUUCAAGAUCAAGAGUAAUUACCAACUUAAUGUUUUUGCAUUGG2000000006ACUUUGAGUUAAGAUUAUUUUUUAAAUCCUGAGG2000000006ACUAGCAUUAAUUGACAGCUGACCCAGGUGCUACACAGAAGUGGAUUCAGUGAAUCUAGGAAG2000000006ACAGCAGCAGACAGGAUUCCAGGAACCAGUGUUUGAUGAAGCUAGG2000000006ACUGAGGAGCAAGCGAGCAAGCAGCAGUUCGUGGUGAAGAUAGGAAAAGAGUCCAGGAGCCAGUGCGAUUUGGUGAAGGAAGCUAGGAAGAAGGAAGGAGCGCUAACGAUUUGGUGGUGAAGCUAGGAAAAAGGAUUCCAGGAAGGAGCGAGUGCAAUUUGGUGAUGAAGGUAGCAGGCGGCUUGGCUUGGCAACCACACGGAGGAGGCGAGCAGGCGUUGUGCGUAGAGGAUCCUAGACCAGCAUGCCAGUGUGCCAAGGCCACAGGGAAAGCGAGUGGUUGGUAAAAAUCCGUGAGGUCGGCAAUAUGUUGUUUUUCUGGA2000000006ACUUACUUAUGUGUAGGAGAAAUACUUUUCCAUUGUUUAACUGCAAAACAAGAUGUUAAGGUAUGCUUCAAAAAUUUUGUAAAUUGUUUAUUUUAAACUUAUCUGUUUGUAAAUUGUAACUGAUUAAGAAUUGUGAUAGUUCAGCUUGAAUGUCUCUUAGAGGGUGGGCUUUUGUUGAUGAGGGAGGGGAAACUUUUUUUUUUUCUAUAGACUUUUUUCAGAUAACAUCUUCUGAGUCAUAACCAGCCUGGCAGUAUGAUGGCCUAGAUGCAGAGAAAACAGCUCCUUGGUGAAUUGAUAAGUAAAGGCAGAAAAGAUUAUAUGUCAUACCUCCAUUGGGGAAUAAGCAUAACCCUGAGAUUCUUACUACUGAUGAGAACAUUAUCUGCAUAUGCCAAAAAAUUUUAAGCAAAUGAAAGCUACCAAUUUAAAGUUACGGAAUCUACCAUUUUAAAGUUAAUUGCUUGUCAAGCUAUAACCACAAAAAUAAUGAAUUGAUGAGAAAUACAAUGAAGAGGCAAUGUCCAUCUCAAAAUACUGCUUUUACAAAAGCAGAAUAAAAGCGAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1	389	462	629	750	1131	1232	1294	1328	1391	1437	1760
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	11:65499045:+	11:65499433:+	11:65499506:+	11:65499673:+	11:65499794:+	11:65500175:+	11:65500276:+	11:65500338:+	11:65500372:+	11:65500435:+	11:65500481:+	11:65500804:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	ArijeGVTwYBw WiQcrNTGZHPT oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	4HMi5ykupT9V 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL aJksAshEgQ8U 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT Lny8GcCeVGc9	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	ArijeGVTwYBw WiQcrNTGZHPT	3TeAZFYFxgvp 4HMi5ykupT9V 6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G