Modomics - A Database of RNA Modifications

General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000535217
Gene ID:	ENSG00000110104
Gene Name:	CCDC86
Sequence (UNICHARACTER ENCODING)	CAGCCGACGGCUGGGAGGCCUAAGGCCCGAAUCCCCCGAGAGCCUCACCUCAGUUUCGCGGACGAGACGGGCCCUUGUGGAGUUCGAGUCGAACCCAGAAGAAACGAGGGAGCCCGGGUCUCCUCCGAGUGUGCAGCGGGCUGGCCUGGGGUCCCCCGAAAGGCCGCCGAAGACAAGCCCAGGAUCACCCCGUCUGCAGCAGGGUGCAGGCUUGGAGUCACCCCAAGGGCAGCCAGAGCCAGGCGCAGCGUCCCCCCAGCCAUGAGCCGAGCAAGCCACCPCCAGCUGGGGAGACGGUGACAGGCGGCUUCGGGGCAAAGAAGCGAAAAGGUUCUUCAPCCCAGGCCCCAGCGUCCAAGAAGUUGAAUAAAGAGGAGCUUCCUGUAAUCCCGAAGGGGAAGCCCAAAUCGGGGCGAGUGUGGAAGGACCGCUCCAAGAAAAGAUUCUCCCAGAUGCUUCAGGACAAGCCCCUGCGCACAUCGUGGCAGCGGAAGAUGAAGGAACGACAGGAGAGGAAGCUGGCCAAGGACUUUGCCCGUCACCUGGAGGAGGAGAAGGAGAGGCGCCGCCAGGAGAAGAAЖCAGCGCCGGGCUGAGAACCUGAAACGCCGCCUGGAGAAUGAGCGGAAGGCAGAGGUCGUCCAAGUGAUCCGAAACCCCGCCAAGCUCAAGCGGGCAAAGAAGAAGCAGCUGCGCUCCAUUGAGAAGCGGGACACCCUGGCCCUGCUGCAGAAGCAGCCGCCCCAGCAGCCGGCAGCCAAGAUCUGAGCUCAGGACGGCCCGAGGCCUUCCAUGGCCAACAACCAUGUCAGACACAGCACCUCAGGCCGCUGCUCAGAUGCCUCUGCUGGAGCUGGCACUCCAAACCCAUGGCUCCAGAЖCAGGGACCCCCACCCCGACCGGGGCUCCUCGGCCUUUGAAGGCUUCCAGGCAGGUCUGUGUGGGЖCAGAAGCCCAGAGGGGGCCUGGGACCUGGCAGAGЖUGGGGGCGGGAAGAGAUUCAGCUCCCЖ PCCCPCCUUCCUCUCCUUCUCCAAGUGCCUUCAAACCAAGAЖCUGUACЖUUCUUCUGGUUCCUCAGUGAGCUGGUGACUGGCAGGUGACUCCCUCAGCAGUGUAUGCCCUUUCUCAGCAPCCUAGGUCCAUCCCAGGCCUGGAGGCUGACAGUUGGGAAUCCAGCUUCCCCCACACCUUCCCAAAGGCUGCUCUGAGCACCPCCACACCCCACUGCCUCUGUCCCCAGCʍ #ЖCUGAAUCCGGUUCCUCUCCACUUUUCAAUACUGAAAGAUUAAAAUGGGGAGGUUGCAGGGAGCAGAGCUUUUCCCUAGCACCCACUUUCCCAAЖCCAGUCUCUGCAGAAGCCCCAGAGAAUCUAЖCUCAUGCCUGUCCAGUCUACAGCAAAAAUAUUUAUUGAGUGCCUGUUGCAUACAGGCACAAUCCUAGGCACCGGCAAAUACAGACAAUAGЖCCAAAGUCCCUGCCCUCGAGGAGCUUUCAUUCU
Sequence (SHORT NAMES ENCODING)	CAGCCGACGGCUGGGAGGCCUAAGGCCCGAAUCCCCCGAGAGCCUCACCUCAGUUUCGCGGACGAGACGGGCCCUUGUGGAGUUCGAGUCGAACCCAGAAGAAACGAGGGAGCCCGGGUCUCCUCCGAGUGUGCAGCGGGCUGGCCUGGGGUCCCCCGAAAGGCCGCCGAAGACAAGCCCAGGAUCACCCCGUCUGCAGCAGGGUGCAGGCUUGGAGUCACCCCAAGGGCAGCCAGAGCCAGGCGCAGCGUCCCCCCAGCCAUGAGCCGAGCAAGCCACCYCCAGCUGGGGAGACGGUGACAGGCGGCUUCGGGGCAAAGAAGCGAAAAGGUUCUUCAYCCCAGGCCCCAGCGUCCAAGAAGUUGAAUAAAGAGGAGCUUCCUGUAAUCCCGAAGGGGAAGCCCAAAUCGGGGCGAGUGUGGAAGGACCGCUCCAAGAAAAGAUUCUCCCAGAUGCUUCAGGACAAGCCCCUGCGCACAUCGUGGCAGCGGAAGAUGAAGGAACGACAGGAGAGGAAGCUGGCCAAGGACUUUGCCCGUCACCUGGAGGAGGAGAAGGAGAGGCGCCGCCAGGAGAAGAAm6ACAGCGCCGGGCUGAGAACCUGAAACGCCGCCUGGAGAAUGAGCGGAAGGCAGAGGUCGUCCAAGUGAUCCGAAACCCCGCCAAGCUCAAGCGGGCAAAGAAGAAGCAGCUGCGCUCCAUUGAGAAGCGGGACACCCUGGCCCUGCUGCAGAAGCAGCCGCCCCAGCAGCCGGCAGCCAAGAUCUGAGCUCAGGACGGCCCGAGGCCUUCCAUGGCCAACAACCAUGUCAGACACAGCACCUCAGGCCGCUGCUCAGAUGCCUCUGCUGGAGCUGGCACUCCAAACCCAUGGCUCCAGAm6ACAGGGACCCCCACCCCGACCGGGGCUCCUCGGCCUUUGAAGGCUUCCAGGCAGGUCUGUGUGGGm6ACAGAAGCCCAGAGGGGGCCUGGGACCUGGCAGAGm6AUGGGGGCGGGAAGAGAUUCAGCUCCCm6A YCCCYCCUUCCUCUCCUUCUCCAAGUGCCUUCAAACCAAGAm6ACUGUACm6AUUCUUCUGGUUCCUCAGUGAGCUGGUGACUGGCAGGUGACUCCCUCAGCAGUGUAUGCCCUUUCUCAGCAYCCUAGGUCCAUCCCAGGCCUGGAGGCUGACAGUUGGGAAUCCAGCUUCCCCCACACCUUCCCAAAGGCUGCUCUGAGCACCYCCACACCCCACUGCCUCUGUCCCCAGCAm Gm m6ACUGAAUCCGGUUCCUCUCCACUUUUCAAUACUGAAAGAUUAAAAUGGGGAGGUUGCAGGGAGCAGAGCUUUUCCCUAGCACCCACUUUCCCAAm6ACCAGUCUCUGCAGAAGCCCCAGAGAAUCUAm6ACUCAUGCCUGUCCAGUCUACAGCAAAAAUAUUUAUUGAGUGCCUGUUGCAUACAGGCACAAUCCUAGGCACCGGCAAAUACAGACAAUAGm6ACCAAAGUCCCUGCCCUCGAGGAGCUUUCAUUCU
Sequence (MODOMICS CODE ENCODING)	CAGCCGACGGCUGGGAGGCCUAAGGCCCGAAUCCCCCGAGAGCCUCACCUCAGUUUCGCGGACGAGACGGGCCCUUGUGGAGUUCGAGUCGAACCCAGAAGAAACGAGGGAGCCCGGGUCUCCUCCGAGUGUGCAGCGGGCUGGCCUGGGGUCCCCCGAAAGGCCGCCGAAGACAAGCCCAGGAUCACCCCGUCUGCAGCAGGGUGCAGGCUUGGAGUCACCCCAAGGGCAGCCAGAGCCAGGCGCAGCGUCCCCCCAGCCAUGAGCCGAGCAAGCCACC2000000009UCCAGCUGGGGAGACGGUGACAGGCGGCUUCGGGGCAAAGAAGCGAAAAGGUUCUUCA2000000009UCCCAGGCCCCAGCGUCCAAGAAGUUGAAUAAAGAGGAGCUUCCUGUAAUCCCGAAGGGGAAGCCCAAAUCGGGGCGAGUGUGGAAGGACCGCUCCAAGAAAAGAUUCUCCCAGAUGCUUCAGGACAAGCCCCUGCGCACAUCGUGGCAGCGGAAGAUGAAGGAACGACAGGAGAGGAAGCUGGCCAAGGACUUUGCCCGUCACCUGGAGGAGGAGAAGGAGAGGCGCCGCCAGGAGAAGAA2000000006ACAGCGCCGGGCUGAGAACCUGAAACGCCGCCUGGAGAAUGAGCGGAAGGCAGAGGUCGUCCAAGUGAUCCGAAACCCCGCCAAGCUCAAGCGGGCAAAGAAGAAGCAGCUGCGCUCCAUUGAGAAGCGGGACACCCUGGCCCUGCUGCAGAAGCAGCCGCCCCAGCAGCCGGCAGCCAAGAUCUGAGCUCAGGACGGCCCGAGGCCUUCCAUGGCCAACAACCAUGUCAGACACAGCACCUCAGGCCGCUGCUCAGAUGCCUCUGCUGGAGCUGGCACUCCAAACCCAUGGCUCCAGA2000000006ACAGGGACCCCCACCCCGACCGGGGCUCCUCGGCCUUUGAAGGCUUCCAGGCAGGUCUGUGUGGG2000000006ACAGAAGCCCAGAGGGGGCCUGGGACCUGGCAGAG2000000006AUGGGGGCGGGAAGAGAUUCAGCUCCC2000000006A 2000000009UCCC2000000009UCCUUCCUCUCCUUCUCCAAGUGCCUUCAAACCAAGA2000000006ACUGUAC2000000006AUUCUUCUGGUUCCUCAGUGAGCUGGUGACUGGCAGGUGACUCCCUCAGCAGUGUAUGCCCUUUCUCAGCA2000000009UCCUAGGUCCAUCCCAGGCCUGGAGGCUGACAGUUGGGAAUCCAGCUUCCCCCACACCUUCCCAAAGGCUGCUCUGAGCACC2000000009UCCACACCCCACUGCCUCUGUCCCCAGC2000000090A 2000000090G 2000000006ACUGAAUCCGGUUCCUCUCCACUUUUCAAUACUGAAAGAUUAAAAUGGGGAGGUUGCAGGGAGCAGAGCUUUUCCCUAGCACCCACUUUCCCAA2000000006ACCAGUCUCUGCAGAAGCCCCAGAGAAUCUA2000000006ACUCAUGCCUGUCCAGUCUACAGCAAAAAUAUUUAUUGAGUGCCUGUUGCAUACAGGCACAAUCCUAGGCACCGGCAAAUACAGACAAUAG2000000006ACCAAAGUCCCUGCCCUCGAGGAGCUUUCAUUCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and
evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered
as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors
should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected.
Class 4 is considered as questionable. Class 5 evidence means that
verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences.
Edit locations not originally present in the RNA sequences are marked by their source.
Their scores are in third row.}

Position in the Sequence	281	339	581	880	945	980	1007	1008	1012	1049	1056	1127	1209	1237	1238	1239	1333	1364	1455
Modification Positions	Y	Y	m6A	m6A	m6A	m6A	m6A	Y	Y	m6A	m6A	Y	Y	Am	Gm	m6A	m6A	m6A	m6A
Genomic Coordinates	11:60842721:+	11:60842779:+	11:60849948:+	11:60850438:+	11:60850503:+	11:60850538:+	11:60850565:+	11:60850566:+	11:60850570:+	11:60850607:+	11:60850614:+	11:60850685:+	11:60850767:+	11:60850795:+	11:60850796:+	11:60850797:+	11:60850891:+	11:60850922:+	11:60851013:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BsCW7emuRX7M Lny8GcCeVGc9 XUkp6ghERQML	BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	jaSvBXBkn3xs YkSG92k4EHDM	NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8