General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000526942
Gene ID:	ENSG00000165526
Gene Name:	RPUSD4
Sequence (UNICHARACTER ENCODING)	CCCAGGUGGAGCGCGUCGGGCCCCUGGAUCCGGGGAAACGGCCAAGGUUGCGGGAGUCUCUUCACUCUCGUCUCAAAGCCAUUUUGUGCCGCUGCCGCUGCCUCUACGGCCAUAAAUGCCCAGAGAUUAGCGGAGAAGCUCCGAGCCCAGAAACGGGAACAAGACACAAAGAAGGAGCCGGUGUCCACAAACGCUGUUCAGCGGAGAGUGCAAGAAAUAGUGCGGUUCACACGGCAGCUGCAGCGAGUCCACCCCAACGUGCUUGCUAAGGCACUGACCCGAGGAAUUCUCCACCAGGACAAGAACCUUGUGGUCAUCAAUAAGCCCUACGGUCUCCCUGUGCAUGGUGGCCCUGGGGUCCAGCUCUGCAUCACUGAUGUACUACCUAUCCUGGCAAAGAUGCUUCAUGGCCACAAGGCAGAGCCCUUGCAUCUGUGCCACCGGCUGGACAAGGAAACCACAGGUGUAAUGGUGUUGGCUUGGGACAAGGACAUGGCACAUCAAGUCCAAGAGUUGUUUAGAACCCGUCAGGUGGUGAAGAAGUACUGGUAUGAGGCCUGCUGAUGGCAGUAGAGGUGGGCCAUCACUGUGCAUGUCCCCAUGCCCUCAGCAGGAGUCGUGGACAUCCCCAUUGUGGAGAAGGAGGCGCAAGGCCAGCAGCAACACCACAAGAUGACAUUGUCCCCGAGCUACCGCAUGGACGAUGGGAAAAUGGUGAAAGUGCGGCGCAGCCGGAAUGCGCAAGUUGCUGUAACUCAGUACCAGGUGCUCAGCAGCACUCUCUCCPCCGCCCUCGUGGAGCUCCAGCCCAUCACUGGAAUAAAACAUCAGCUUCGAGUUCACUUGUCUUUUGGAUUGGAUUGUCCAAUCCUUGGUGAUCACЖAGUACUCAGACUGGAAUAGGUUGGCCCCCCAGAAGCUGUCUGUGGGCACCCUGAAGAAGCUGGGGCUAGAЖCAGUCGAAGGCCCGCUACAPCCCCCUUCACCUGCACGCCCGGCAGCUGAUCCUGCCUGCCCUGGGGUCCGGGAAGGAGGAACUCAACUUGGUCUGCAAACUUCCUCGCUUCUUUGUGCAUUCCCUGCACCGCCUGCGUUUAGAGAUGCCAAAUGAGGAUCAAAAUGAGAЖCAAUGAAGCCAAGUGUCUGGGAGCACAGUGAAGACCAUGGGAGCACCCUGGCACCUGGGAGCACAGUGAAGACCCUGAGAGCAUCCUGGCACCUGGGAGCGCAGGUUGGCCCCUGAЖCUGUUCUUUGUUUACAGGЖCUCUGCUAACUUCUCACUUGGAЖCAGЖCUGCGUAAGAGCCAGGUGGGAUAAGGUAAAGCAACUCAGCUGCUACAGGGCUUUUAAUGGAGAACAAAGUCUAUUUACUGAUAGUUUGGCUGCACUGUGGAAAAGCCUGCUGGAAGUCUCCCUGCCGUGGGCUCUCAUUGCCAAUAUGGAЖCAGAGCCCAGGGCCAGGCAGACUGGGGCAGUGACUGGAAAAGGAAAACUAAAGGUCAGAAUCCGGGAUCAGGAЖCUGUUUUUAUCCAGCAGUGAAGCUCUUGAGCUCUUAGGAAGGUUCCCGUGGUUGGAAAGAACAUAAUGGUUAACAAAUAUCACAGCAUCCAGGGAUUGCCCAGCUAUAGUGUGGGUGCCCUACUGAЖCUCUGAUUAGGGAACCUGUAUAAGGGUAUUGAGUGUGAGGUUGAGGUGGGACAUUUGCUGAGCAAGGAGAACCGAUGUGAAUGGCAGGCAGAUAЖCAUGCACACAUGAAGCUGGCUGGGUGUAAGGCAGUAGCGGGGAGCGGCAUGCUGUCU
Sequence (SHORT NAMES ENCODING)	CCCAGGUGGAGCGCGUCGGGCCCCUGGAUCCGGGGAAACGGCCAAGGUUGCGGGAGUCUCUUCACUCUCGUCUCAAAGCCAUUUUGUGCCGCUGCCGCUGCCUCUACGGCCAUAAAUGCCCAGAGAUUAGCGGAGAAGCUCCGAGCCCAGAAACGGGAACAAGACACAAAGAAGGAGCCGGUGUCCACAAACGCUGUUCAGCGGAGAGUGCAAGAAAUAGUGCGGUUCACACGGCAGCUGCAGCGAGUCCACCCCAACGUGCUUGCUAAGGCACUGACCCGAGGAAUUCUCCACCAGGACAAGAACCUUGUGGUCAUCAAUAAGCCCUACGGUCUCCCUGUGCAUGGUGGCCCUGGGGUCCAGCUCUGCAUCACUGAUGUACUACCUAUCCUGGCAAAGAUGCUUCAUGGCCACAAGGCAGAGCCCUUGCAUCUGUGCCACCGGCUGGACAAGGAAACCACAGGUGUAAUGGUGUUGGCUUGGGACAAGGACAUGGCACAUCAAGUCCAAGAGUUGUUUAGAACCCGUCAGGUGGUGAAGAAGUACUGGUAUGAGGCCUGCUGAUGGCAGUAGAGGUGGGCCAUCACUGUGCAUGUCCCCAUGCCCUCAGCAGGAGUCGUGGACAUCCCCAUUGUGGAGAAGGAGGCGCAAGGCCAGCAGCAACACCACAAGAUGACAUUGUCCCCGAGCUACCGCAUGGACGAUGGGAAAAUGGUGAAAGUGCGGCGCAGCCGGAAUGCGCAAGUUGCUGUAACUCAGUACCAGGUGCUCAGCAGCACUCUCUCCYCCGCCCUCGUGGAGCUCCAGCCCAUCACUGGAAUAAAACAUCAGCUUCGAGUUCACUUGUCUUUUGGAUUGGAUUGUCCAAUCCUUGGUGAUCACm6AAGUACUCAGACUGGAAUAGGUUGGCCCCCCAGAAGCUGUCUGUGGGCACCCUGAAGAAGCUGGGGCUAGAm6ACAGUCGAAGGCCCGCUACAYCCCCCUUCACCUGCACGCCCGGCAGCUGAUCCUGCCUGCCCUGGGGUCCGGGAAGGAGGAACUCAACUUGGUCUGCAAACUUCCUCGCUUCUUUGUGCAUUCCCUGCACCGCCUGCGUUUAGAGAUGCCAAAUGAGGAUCAAAAUGAGAm6ACAAUGAAGCCAAGUGUCUGGGAGCACAGUGAAGACCAUGGGAGCACCCUGGCACCUGGGAGCACAGUGAAGACCCUGAGAGCAUCCUGGCACCUGGGAGCGCAGGUUGGCCCCUGAm6ACUGUUCUUUGUUUACAGGm6ACUCUGCUAACUUCUCACUUGGAm6ACAGm6ACUGCGUAAGAGCCAGGUGGGAUAAGGUAAAGCAACUCAGCUGCUACAGGGCUUUUAAUGGAGAACAAAGUCUAUUUACUGAUAGUUUGGCUGCACUGUGGAAAAGCCUGCUGGAAGUCUCCCUGCCGUGGGCUCUCAUUGCCAAUAUGGAm6ACAGAGCCCAGGGCCAGGCAGACUGGGGCAGUGACUGGAAAAGGAAAACUAAAGGUCAGAAUCCGGGAUCAGGAm6ACUGUUUUUAUCCAGCAGUGAAGCUCUUGAGCUCUUAGGAAGGUUCCCGUGGUUGGAAAGAACAUAAUGGUUAACAAAUAUCACAGCAUCCAGGGAUUGCCCAGCUAUAGUGUGGGUGCCCUACUGAm6ACUCUGAUUAGGGAACCUGUAUAAGGGUAUUGAGUGUGAGGUUGAGGUGGGACAUUUGCUGAGCAAGGAGAACCGAUGUGAAUGGCAGGCAGAUAm6ACAUGCACACAUGAAGCUGGCUGGGUGUAAGGCAGUAGCGGGGAGCGGCAUGCUGUCU
Sequence (MODOMICS CODE ENCODING)	CCCAGGUGGAGCGCGUCGGGCCCCUGGAUCCGGGGAAACGGCCAAGGUUGCGGGAGUCUCUUCACUCUCGUCUCAAAGCCAUUUUGUGCCGCUGCCGCUGCCUCUACGGCCAUAAAUGCCCAGAGAUUAGCGGAGAAGCUCCGAGCCCAGAAACGGGAACAAGACACAAAGAAGGAGCCGGUGUCCACAAACGCUGUUCAGCGGAGAGUGCAAGAAAUAGUGCGGUUCACACGGCAGCUGCAGCGAGUCCACCCCAACGUGCUUGCUAAGGCACUGACCCGAGGAAUUCUCCACCAGGACAAGAACCUUGUGGUCAUCAAUAAGCCCUACGGUCUCCCUGUGCAUGGUGGCCCUGGGGUCCAGCUCUGCAUCACUGAUGUACUACCUAUCCUGGCAAAGAUGCUUCAUGGCCACAAGGCAGAGCCCUUGCAUCUGUGCCACCGGCUGGACAAGGAAACCACAGGUGUAAUGGUGUUGGCUUGGGACAAGGACAUGGCACAUCAAGUCCAAGAGUUGUUUAGAACCCGUCAGGUGGUGAAGAAGUACUGGUAUGAGGCCUGCUGAUGGCAGUAGAGGUGGGCCAUCACUGUGCAUGUCCCCAUGCCCUCAGCAGGAGUCGUGGACAUCCCCAUUGUGGAGAAGGAGGCGCAAGGCCAGCAGCAACACCACAAGAUGACAUUGUCCCCGAGCUACCGCAUGGACGAUGGGAAAAUGGUGAAAGUGCGGCGCAGCCGGAAUGCGCAAGUUGCUGUAACUCAGUACCAGGUGCUCAGCAGCACUCUCUCC2000000009UCCGCCCUCGUGGAGCUCCAGCCCAUCACUGGAAUAAAACAUCAGCUUCGAGUUCACUUGUCUUUUGGAUUGGAUUGUCCAAUCCUUGGUGAUCAC2000000006AAGUACUCAGACUGGAAUAGGUUGGCCCCCCAGAAGCUGUCUGUGGGCACCCUGAAGAAGCUGGGGCUAGA2000000006ACAGUCGAAGGCCCGCUACA2000000009UCCCCCUUCACCUGCACGCCCGGCAGCUGAUCCUGCCUGCCCUGGGGUCCGGGAAGGAGGAACUCAACUUGGUCUGCAAACUUCCUCGCUUCUUUGUGCAUUCCCUGCACCGCCUGCGUUUAGAGAUGCCAAAUGAGGAUCAAAAUGAGA2000000006ACAAUGAAGCCAAGUGUCUGGGAGCACAGUGAAGACCAUGGGAGCACCCUGGCACCUGGGAGCACAGUGAAGACCCUGAGAGCAUCCUGGCACCUGGGAGCGCAGGUUGGCCCCUGA2000000006ACUGUUCUUUGUUUACAGG2000000006ACUCUGCUAACUUCUCACUUGGA2000000006ACAG2000000006ACUGCGUAAGAGCCAGGUGGGAUAAGGUAAAGCAACUCAGCUGCUACAGGGCUUUUAAUGGAGAACAAAGUCUAUUUACUGAUAGUUUGGCUGCACUGUGGAAAAGCCUGCUGGAAGUCUCCCUGCCGUGGGCUCUCAUUGCCAAUAUGGA2000000006ACAGAGCCCAGGGCCAGGCAGACUGGGGCAGUGACUGGAAAAGGAAAACUAAAGGUCAGAAUCCGGGAUCAGGA2000000006ACUGUUUUUAUCCAGCAGUGAAGCUCUUGAGCUCUUAGGAAGGUUCCCGUGGUUGGAAAGAACAUAAUGGUUAACAAAUAUCACAGCAUCCAGGGAUUGCCCAGCUAUAGUGUGGGUGCCCUACUGA2000000006ACUCUGAUUAGGGAACCUGUAUAAGGGUAUUGAGUGUGAGGUUGAGGUGGGACAUUUGCUGAGCAAGGAGAACCGAUGUGAAUGGCAGGCAGAUA2000000006ACAUGCACACAUGAAGCUGGCUGGGUGUAAGGCAGUAGCGGGGAGCGGCAUGCUGUCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	787	883	954	974	1124	1241	1260	1283	1287	1438	1512	1639	1734
Modification Positions	Y	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	11:126205498:-	11:126204263:-	11:126203619:-	11:126203599:-	11:126203449:-	11:126203332:-	11:126203313:-	11:126203290:-	11:126203286:-	11:126203135:-	11:126203061:-	11:126202934:-	11:126202839:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G 834aFpha8RvT ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G 834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8