General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000525503
Gene ID:	ENSG00000137500
Gene Name:	CCDC90B
Sequence (UNICHARACTER ENCODING)	CCCCCGACCCAAGCGCGUAAUGGCCGCUGGCUAUCUUGGGGGAGCCAGCUGUUGGЖCUAUGCCCCACUGCCAGGAAACAGGCGCCGGAAGGUUCUCUGACAAGAUCUCGCUUUCCUAGGGCGGUGAAGGCGUUCAAAGGUCGGGAAGGGGCGCUGGGAGAAGCGGGGCAGCGCUGAGCCAUGCUCGCGAЖCUGUGGGUCUGUCUGUGAAGAGACCCAGUUUCGUGGGACCACGGUGGCGCCUGCGCUGGGAGGUGAGCUUGUGACAGAGCGAAAACUACAAUUCCCAGCAUUCCUGUGGUGCCAGAACUACCUUGCCCGAAAGCCUGUGCGAGAUUUACCCCGUCUUCCGCCUCCCUCCCACCGGAAAACUCUGAGGЖCAUGAAUAGUCGCCAGGCUUGGCGGCUCUUUCUCUCCCAAGGCAGAGGAGAUCGUUGGGUUUCAAGGCCCCGCGGGCAUUUCUCGCCGGCCCUGCGGAGAGGUGAGGCAAGGCGUCGUGUCAUAGAUGCCUGAGUGCUCUCUAGGGAGACGAUGCCCGUGGGGUCGCGCCUGCUCGAGCGAACGGGAAGAGAAGGUGCCACGCCCUCCUCCCGGAUUCACGCCUUGUGCUGGGCGACGCCGCUGCCUGCUGCCCCGACUUGCCCAGCUCGCCCCAAGGGGCGAGGЖCUGAGGAAAGCACUGCCUUUCUGUUCUUAAAGCGAЖCCUUUGAAGGCCUGGGCUUCGCGCCCGGCUUCUUUCUCAGCCGUUGUUUCCGUUUUUUGGUGACAAGAGGCUAGUAAUCUCGUCAGGAGCCAACGUAAGAGUUCUUCACUACCACAACCAAGGAGGGAUAUGAUAGGCGGCCAGUGGAUAUAЖCUCCUPUAGAACAAAGGAAAUUAЖCUUUUGAUACCCAUGCAUUGGUUCAGGACUUGGAAACUCAUGGAUUUGACAAAACACAAGCAGAAACAAUUGUAUCAGCGUUAACUGCUPUAUCAAAUGUCAGCCUGGAUACUAUCUAUAAAGAGAUGGUCACUCAAGCUCAACAGGAAAUAACAGUACAACAGCUAAUGGCUCAUUUGGAUGCUAUCAGGAAAGACAUGGUCAPCCUAGAGAAAAGUGAAUUUGCAAAUCUGAGAGCAGAGAAUGAGAAAAUGAAAAUUGAAUUAGACCAAGUUAAGCAACAACUAAUGCAUGAAACCAGUCGAAUCAGAGCAGAUAAUAAACUGGAUAUCAACUUAGAAAGGAGCAGAGUAACAGAUAUGUUUACAGAUCAAGAAAAGCAACUUAUGGAAACAACUACAGAAUUUACAAAAAAGGAUACUCAAACCAAAAGUAUUAUUUCAGAGACCAGUAAUAAAAUUGACGCUGAAAUUGCUUCCUUAAAAACACUGAUGGAAUCUAACAAACUUGAGACAAUUCGUUAUCUUGCAGCUUCGGUGUUUACUUGCCUGGCAAUAGCAUUGGGAUUUUAUAGAUUCUGGAAGUAGUAUUAAUGCUCAPCCUGCUGUGGCUGUUGGCUUCUUAGAACACCAAЖCCGGGAGAGAUUUACUUUGAЖCAUUGUCAGUUGCAGCAAAAAUUUACUACACAAGAUUAUUCGAAGUGUAUACGGЖCUAAAAGAGGAAGUGUUUUAGAAUGAGAAGAGAUACUGUGUCUPUAUUGUGUGUGUGUGAGUGCAGGUGUGUGUCUPUAUUAUAUUGAAAAGCUGUCACUCAGACCUGGUUUGAGAUAGAAGAGCAUUUUGUCCUUUUGAUAGUUAAUAGAAAUUGAACCAGAGUUUUCUUAUGUUUGCUUGAACAGUUGUGUAAAUCAUACAGGAUUUUGUGGGUAUUGGUUGAAUAUUUGUAAACCAUUCCCUAGCCUACAUAUUUAUUACUGAAUUAЖCUUUCCUGAUAACCAUUGCAUAAUUACAUUUUUCUAUAAAAUGAAAGAUUAUUACAACAAA
Sequence (SHORT NAMES ENCODING)	CCCCCGACCCAAGCGCGUAAUGGCCGCUGGCUAUCUUGGGGGAGCCAGCUGUUGGm6ACUAUGCCCCACUGCCAGGAAACAGGCGCCGGAAGGUUCUCUGACAAGAUCUCGCUUUCCUAGGGCGGUGAAGGCGUUCAAAGGUCGGGAAGGGGCGCUGGGAGAAGCGGGGCAGCGCUGAGCCAUGCUCGCGAm6ACUGUGGGUCUGUCUGUGAAGAGACCCAGUUUCGUGGGACCACGGUGGCGCCUGCGCUGGGAGGUGAGCUUGUGACAGAGCGAAAACUACAAUUCCCAGCAUUCCUGUGGUGCCAGAACUACCUUGCCCGAAAGCCUGUGCGAGAUUUACCCCGUCUUCCGCCUCCCUCCCACCGGAAAACUCUGAGGm6ACAUGAAUAGUCGCCAGGCUUGGCGGCUCUUUCUCUCCCAAGGCAGAGGAGAUCGUUGGGUUUCAAGGCCCCGCGGGCAUUUCUCGCCGGCCCUGCGGAGAGGUGAGGCAAGGCGUCGUGUCAUAGAUGCCUGAGUGCUCUCUAGGGAGACGAUGCCCGUGGGGUCGCGCCUGCUCGAGCGAACGGGAAGAGAAGGUGCCACGCCCUCCUCCCGGAUUCACGCCUUGUGCUGGGCGACGCCGCUGCCUGCUGCCCCGACUUGCCCAGCUCGCCCCAAGGGGCGAGGm6ACUGAGGAAAGCACUGCCUUUCUGUUCUUAAAGCGAm6ACCUUUGAAGGCCUGGGCUUCGCGCCCGGCUUCUUUCUCAGCCGUUGUUUCCGUUUUUUGGUGACAAGAGGCUAGUAAUCUCGUCAGGAGCCAACGUAAGAGUUCUUCACUACCACAACCAAGGAGGGAUAUGAUAGGCGGCCAGUGGAUAUAm6ACUCCUYUAGAACAAAGGAAAUUAm6ACUUUUGAUACCCAUGCAUUGGUUCAGGACUUGGAAACUCAUGGAUUUGACAAAACACAAGCAGAAACAAUUGUAUCAGCGUUAACUGCUYUAUCAAAUGUCAGCCUGGAUACUAUCUAUAAAGAGAUGGUCACUCAAGCUCAACAGGAAAUAACAGUACAACAGCUAAUGGCUCAUUUGGAUGCUAUCAGGAAAGACAUGGUCAYCCUAGAGAAAAGUGAAUUUGCAAAUCUGAGAGCAGAGAAUGAGAAAAUGAAAAUUGAAUUAGACCAAGUUAAGCAACAACUAAUGCAUGAAACCAGUCGAAUCAGAGCAGAUAAUAAACUGGAUAUCAACUUAGAAAGGAGCAGAGUAACAGAUAUGUUUACAGAUCAAGAAAAGCAACUUAUGGAAACAACUACAGAAUUUACAAAAAAGGAUACUCAAACCAAAAGUAUUAUUUCAGAGACCAGUAAUAAAAUUGACGCUGAAAUUGCUUCCUUAAAAACACUGAUGGAAUCUAACAAACUUGAGACAAUUCGUUAUCUUGCAGCUUCGGUGUUUACUUGCCUGGCAAUAGCAUUGGGAUUUUAUAGAUUCUGGAAGUAGUAUUAAUGCUCAYCCUGCUGUGGCUGUUGGCUUCUUAGAACACCAAm6ACCGGGAGAGAUUUACUUUGAm6ACAUUGUCAGUUGCAGCAAAAAUUUACUACACAAGAUUAUUCGAAGUGUAUACGGm6ACUAAAAGAGGAAGUGUUUUAGAAUGAGAAGAGAUACUGUGUCUYUAUUGUGUGUGUGUGAGUGCAGGUGUGUGUCUYUAUUAUAUUGAAAAGCUGUCACUCAGACCUGGUUUGAGAUAGAAGAGCAUUUUGUCCUUUUGAUAGUUAAUAGAAAUUGAACCAGAGUUUUCUUAUGUUUGCUUGAACAGUUGUGUAAAUCAUACAGGAUUUUGUGGGUAUUGGUUGAAUAUUUGUAAACCAUUCCCUAGCCUACAUAUUUAUUACUGAAUUAm6ACUUUCCUGAUAACCAUUGCAUAAUUACAUUUUUCUAUAAAAUGAAAGAUUAUUACAACAAA
Sequence (MODOMICS CODE ENCODING)	CCCCCGACCCAAGCGCGUAAUGGCCGCUGGCUAUCUUGGGGGAGCCAGCUGUUGG2000000006ACUAUGCCCCACUGCCAGGAAACAGGCGCCGGAAGGUUCUCUGACAAGAUCUCGCUUUCCUAGGGCGGUGAAGGCGUUCAAAGGUCGGGAAGGGGCGCUGGGAGAAGCGGGGCAGCGCUGAGCCAUGCUCGCGA2000000006ACUGUGGGUCUGUCUGUGAAGAGACCCAGUUUCGUGGGACCACGGUGGCGCCUGCGCUGGGAGGUGAGCUUGUGACAGAGCGAAAACUACAAUUCCCAGCAUUCCUGUGGUGCCAGAACUACCUUGCCCGAAAGCCUGUGCGAGAUUUACCCCGUCUUCCGCCUCCCUCCCACCGGAAAACUCUGAGG2000000006ACAUGAAUAGUCGCCAGGCUUGGCGGCUCUUUCUCUCCCAAGGCAGAGGAGAUCGUUGGGUUUCAAGGCCCCGCGGGCAUUUCUCGCCGGCCCUGCGGAGAGGUGAGGCAAGGCGUCGUGUCAUAGAUGCCUGAGUGCUCUCUAGGGAGACGAUGCCCGUGGGGUCGCGCCUGCUCGAGCGAACGGGAAGAGAAGGUGCCACGCCCUCCUCCCGGAUUCACGCCUUGUGCUGGGCGACGCCGCUGCCUGCUGCCCCGACUUGCCCAGCUCGCCCCAAGGGGCGAGG2000000006ACUGAGGAAAGCACUGCCUUUCUGUUCUUAAAGCGA2000000006ACCUUUGAAGGCCUGGGCUUCGCGCCCGGCUUCUUUCUCAGCCGUUGUUUCCGUUUUUUGGUGACAAGAGGCUAGUAAUCUCGUCAGGAGCCAACGUAAGAGUUCUUCACUACCACAACCAAGGAGGGAUAUGAUAGGCGGCCAGUGGAUAUA2000000006ACUCCU2000000009UUAGAACAAAGGAAAUUA2000000006ACUUUUGAUACCCAUGCAUUGGUUCAGGACUUGGAAACUCAUGGAUUUGACAAAACACAAGCAGAAACAAUUGUAUCAGCGUUAACUGCU2000000009UUAUCAAAUGUCAGCCUGGAUACUAUCUAUAAAGAGAUGGUCACUCAAGCUCAACAGGAAAUAACAGUACAACAGCUAAUGGCUCAUUUGGAUGCUAUCAGGAAAGACAUGGUCA2000000009UCCUAGAGAAAAGUGAAUUUGCAAAUCUGAGAGCAGAGAAUGAGAAAAUGAAAAUUGAAUUAGACCAAGUUAAGCAACAACUAAUGCAUGAAACCAGUCGAAUCAGAGCAGAUAAUAAACUGGAUAUCAACUUAGAAAGGAGCAGAGUAACAGAUAUGUUUACAGAUCAAGAAAAGCAACUUAUGGAAACAACUACAGAAUUUACAAAAAAGGAUACUCAAACCAAAAGUAUUAUUUCAGAGACCAGUAAUAAAAUUGACGCUGAAAUUGCUUCCUUAAAAACACUGAUGGAAUCUAACAAACUUGAGACAAUUCGUUAUCUUGCAGCUUCGGUGUUUACUUGCCUGGCAAUAGCAUUGGGAUUUUAUAGAUUCUGGAAGUAGUAUUAAUGCUCA2000000009UCCUGCUGUGGCUGUUGGCUUCUUAGAACACCAA2000000006ACCGGGAGAGAUUUACUUUGA2000000006ACAUUGUCAGUUGCAGCAAAAAUUUACUACACAAGAUUAUUCGAAGUGUAUACGG2000000006ACUAAAAGAGGAAGUGUUUUAGAAUGAGAAGAGAUACUGUGUCU2000000009UUAUUGUGUGUGUGUGAGUGCAGGUGUGUGUCU2000000009UUAUUAUAUUGAAAAGCUGUCACUCAGACCUGGUUUGAGAUAGAAGAGCAUUUUGUCCUUUUGAUAGUUAAUAGAAAUUGAACCAGAGUUUUCUUAUGUUUGCUUGAACAGUUGUGUAAAUCAUACAGGAUUUUGUGGGUAUUGGUUGAAUAUUUGUAAACCAUUCCCUAGCCUACAUAUUUAUUACUGAAUUA2000000006ACUUUCCUGAUAACCAUUGCAUAAUUACAUUUUUCUAUAAAAUGAAAGAUUAUUACAACAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	56	190	378	664	700	853	859	877	967	1082	1477	1511	1532	1587	1631	1664	1858
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	Y	Y	Y	m6A	m6A	m6A	Y	Y	m6A
Genomic Coordinates	11:83286296:-	11:83286162:-	11:83285974:-	11:83285688:-	11:83285652:-	11:83280207:-	11:83280201:-	11:83280183:-	11:83278782:-	11:83274682:-	11:83261898:-	11:83261864:-	11:83261843:-	11:83261788:-	11:83261744:-	11:83261711:-	11:83261517:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh msuJfBpJvM5H QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se Lny8GcCeVGc9	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 BtsJQJ3DteUq	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 6UuHp6YApVKv msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8