General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000448108
Gene ID:	ENSG00000166012
Gene Name:	TAF1D
Sequence (UNICHARACTER ENCODING)	CCUUUUCUUCCGCACGGUUGGAGGAGGUCGGCUGGUUAUCGGGAGUUGGAGGGCUGAGGUCGGGAGGGUGGUGUGUACЖGAGCUCUAGGACACCAGGCCAGUCGCGGGUUUUGGGCCGAGGCCUGGGUUACAAGCAGCAAGUGCGCGGUUGGGGCCACUGCGAGGCCGUUUUAGAAAACUGUUUAAAACAAAGAGCAAUUGAUGGAUAAAUCAGGAAUAGAUUCUCUUGACCAUGUGACAUCUGAUGCUGUGGAACUUGCAAAUCGAAGUGAUAЖCUCUUCUGAUAGCAGCUUAUUUAAAACUCAGUGUAUCCCUUACUCACCUAAAGGGGAGAAAAGAAACCCCAUUCGAAAAUUUGUUCGUACACCUGAAAGUGUUCACGCAAGUGAUUCAUCAAGUGACUCAUCUUUUGAACCAAUACCAUUGЖCUAUAAAAGCUAUUUUUGAAAGAUUCAAGAACAGGAAAAAGAGAUAUAAAAAAAAGAAAAAGAGGAGGUACCAGCCAACAGGAAGACCACGGGGAAGЖCCAGAAGGAAGGAGAAAUCCUAUAUACUCACUAAUAGAUAAGAAGAAACAAUUUAGAAGCAGAGGAUCUGGCUUCCCAUUUUUAGAAUCAGAGAAUGAAAAAAACGCACCUUGGAGAAAAAUUUUAACGUUUGAGCAAGCUGUUGCAAGAGGAUUUUUUAACUAUAUUGAAAAACUGAAGUAUGAACACCACCUGAAAGAAUCAUUGAAGCAAAUGAAUGUUGGUGAAGAUUUAGAAAAUGAAGAUUUUGACAGUCGUAGAUACЖAAUUUUUGGAUGAUGAUGGAUCCAUUUCUCCUAUUGAGGAGUCAACAGCAGAGGAUGAGGAUGCAACACAUCUUGAAGAUAACGAAUGUGAUAUCAAAUUGGCAGGGGAUAGUUUCAUAGUAAGUUCUGAAUUCCCUGUAAGACUGAGUGUAUACUUAGAAGAAGAGGAUAUUACUGAAGAAGCUGCUUUGUCUAAAAAGAGAGCUACAAAAGCCAAAAAUACUGGЖCAGAGAGGCCUGAAAAUGUGACAGGAUCAUGAAUGUCAAAGGUGAAGCAUAUAGAAAAAACGACUUCAUAGAAAUGAAUAAAGAUAAAUGUGGAUAUAUGUACCAGUCUGGUGGUGAAGAAAUUCUGAAACCCAGAЖCUPUAUAЖCAAGAAAAAAAAUUUUUAACCCUGUGAAGAAGUUUGUGAAAGAAACUUGUGAAGUAGUAAUAAUUAGAAAAAAAACCAUUAAAACACCAGAGAAAAUACAUAGAAAAAUUUGAGAAAUUGUCAUUUGAUUUCUGAAUAAGAGCUUACAGGUGUCCUGUGAGUAUUGAAACAAUGAAAUGUAGUGAUUUUAAUUUUGAAAAGAAAAUCUUAAAGUAACUUGACACCCAACCAUCUUGAAGAGGGGAUUUGAAAUGCUGUAAUUUUAUCCCAGCUUUGUUCAGCCAUGACAAGUGACCUGUCAGAUGCUUAGUAUUGUAAUAACCUCAUUUCCCUUUCCAAAUUUAGAGUAUCUUUAAUACUAUUUUUUUUAGACAGAGUCUCGAUCUGUCACCCAGGCUGUAGUGCAAUGGCCGCAGUCUUGGCUUACUGCAACCUCCAUCUCCCGGGUUCAAGCGAUUCUGCCUCAGCCU
Sequence (SHORT NAMES ENCODING)	CCUUUUCUUCCGCACGGUUGGAGGAGGUCGGCUGGUUAUCGGGAGUUGGAGGGCUGAGGUCGGGAGGGUGGUGUGUACm6AGAGCUCUAGGACACCAGGCCAGUCGCGGGUUUUGGGCCGAGGCCUGGGUUACAAGCAGCAAGUGCGCGGUUGGGGCCACUGCGAGGCCGUUUUAGAAAACUGUUUAAAACAAAGAGCAAUUGAUGGAUAAAUCAGGAAUAGAUUCUCUUGACCAUGUGACAUCUGAUGCUGUGGAACUUGCAAAUCGAAGUGAUAm6ACUCUUCUGAUAGCAGCUUAUUUAAAACUCAGUGUAUCCCUUACUCACCUAAAGGGGAGAAAAGAAACCCCAUUCGAAAAUUUGUUCGUACACCUGAAAGUGUUCACGCAAGUGAUUCAUCAAGUGACUCAUCUUUUGAACCAAUACCAUUGm6ACUAUAAAAGCUAUUUUUGAAAGAUUCAAGAACAGGAAAAAGAGAUAUAAAAAAAAGAAAAAGAGGAGGUACCAGCCAACAGGAAGACCACGGGGAAGm6ACCAGAAGGAAGGAGAAAUCCUAUAUACUCACUAAUAGAUAAGAAGAAACAAUUUAGAAGCAGAGGAUCUGGCUUCCCAUUUUUAGAAUCAGAGAAUGAAAAAAACGCACCUUGGAGAAAAAUUUUAACGUUUGAGCAAGCUGUUGCAAGAGGAUUUUUUAACUAUAUUGAAAAACUGAAGUAUGAACACCACCUGAAAGAAUCAUUGAAGCAAAUGAAUGUUGGUGAAGAUUUAGAAAAUGAAGAUUUUGACAGUCGUAGAUACm6AAAUUUUUGGAUGAUGAUGGAUCCAUUUCUCCUAUUGAGGAGUCAACAGCAGAGGAUGAGGAUGCAACACAUCUUGAAGAUAACGAAUGUGAUAUCAAAUUGGCAGGGGAUAGUUUCAUAGUAAGUUCUGAAUUCCCUGUAAGACUGAGUGUAUACUUAGAAGAAGAGGAUAUUACUGAAGAAGCUGCUUUGUCUAAAAAGAGAGCUACAAAAGCCAAAAAUACUGGm6ACAGAGAGGCCUGAAAAUGUGACAGGAUCAUGAAUGUCAAAGGUGAAGCAUAUAGAAAAAACGACUUCAUAGAAAUGAAUAAAGAUAAAUGUGGAUAUAUGUACCAGUCUGGUGGUGAAGAAAUUCUGAAACCCAGAm6ACUYUAUAm6ACAAGAAAAAAAAUUUUUAACCCUGUGAAGAAGUUUGUGAAAGAAACUUGUGAAGUAGUAAUAAUUAGAAAAAAAACCAUUAAAACACCAGAGAAAAUACAUAGAAAAAUUUGAGAAAUUGUCAUUUGAUUUCUGAAUAAGAGCUUACAGGUGUCCUGUGAGUAUUGAAACAAUGAAAUGUAGUGAUUUUAAUUUUGAAAAGAAAAUCUUAAAGUAACUUGACACCCAACCAUCUUGAAGAGGGGAUUUGAAAUGCUGUAAUUUUAUCCCAGCUUUGUUCAGCCAUGACAAGUGACCUGUCAGAUGCUUAGUAUUGUAAUAACCUCAUUUCCCUUUCCAAAUUUAGAGUAUCUUUAAUACUAUUUUUUUUAGACAGAGUCUCGAUCUGUCACCCAGGCUGUAGUGCAAUGGCCGCAGUCUUGGCUUACUGCAACCUCCAUCUCCCGGGUUCAAGCGAUUCUGCCUCAGCCU
Sequence (MODOMICS CODE ENCODING)	CCUUUUCUUCCGCACGGUUGGAGGAGGUCGGCUGGUUAUCGGGAGUUGGAGGGCUGAGGUCGGGAGGGUGGUGUGUAC2000000006AGAGCUCUAGGACACCAGGCCAGUCGCGGGUUUUGGGCCGAGGCCUGGGUUACAAGCAGCAAGUGCGCGGUUGGGGCCACUGCGAGGCCGUUUUAGAAAACUGUUUAAAACAAAGAGCAAUUGAUGGAUAAAUCAGGAAUAGAUUCUCUUGACCAUGUGACAUCUGAUGCUGUGGAACUUGCAAAUCGAAGUGAUA2000000006ACUCUUCUGAUAGCAGCUUAUUUAAAACUCAGUGUAUCCCUUACUCACCUAAAGGGGAGAAAAGAAACCCCAUUCGAAAAUUUGUUCGUACACCUGAAAGUGUUCACGCAAGUGAUUCAUCAAGUGACUCAUCUUUUGAACCAAUACCAUUG2000000006ACUAUAAAAGCUAUUUUUGAAAGAUUCAAGAACAGGAAAAAGAGAUAUAAAAAAAAGAAAAAGAGGAGGUACCAGCCAACAGGAAGACCACGGGGAAG2000000006ACCAGAAGGAAGGAGAAAUCCUAUAUACUCACUAAUAGAUAAGAAGAAACAAUUUAGAAGCAGAGGAUCUGGCUUCCCAUUUUUAGAAUCAGAGAAUGAAAAAAACGCACCUUGGAGAAAAAUUUUAACGUUUGAGCAAGCUGUUGCAAGAGGAUUUUUUAACUAUAUUGAAAAACUGAAGUAUGAACACCACCUGAAAGAAUCAUUGAAGCAAAUGAAUGUUGGUGAAGAUUUAGAAAAUGAAGAUUUUGACAGUCGUAGAUAC2000000006AAAUUUUUGGAUGAUGAUGGAUCCAUUUCUCCUAUUGAGGAGUCAACAGCAGAGGAUGAGGAUGCAACACAUCUUGAAGAUAACGAAUGUGAUAUCAAAUUGGCAGGGGAUAGUUUCAUAGUAAGUUCUGAAUUCCCUGUAAGACUGAGUGUAUACUUAGAAGAAGAGGAUAUUACUGAAGAAGCUGCUUUGUCUAAAAAGAGAGCUACAAAAGCCAAAAAUACUGG2000000006ACAGAGAGGCCUGAAAAUGUGACAGGAUCAUGAAUGUCAAAGGUGAAGCAUAUAGAAAAAACGACUUCAUAGAAAUGAAUAAAGAUAAAUGUGGAUAUAUGUACCAGUCUGGUGGUGAAGAAAUUCUGAAACCCAGA2000000006ACU2000000009UUAUA2000000006ACAAGAAAAAAAAUUUUUAACCCUGUGAAGAAGUUUGUGAAAGAAACUUGUGAAGUAGUAAUAAUUAGAAAAAAAACCAUUAAAACACCAGAGAAAAUACAUAGAAAAAUUUGAGAAAUUGUCAUUUGAUUUCUGAAUAAGAGCUUACAGGUGUCCUGUGAGUAUUGAAACAAUGAAAUGUAGUGAUUUUAAUUUUGAAAAGAAAAUCUUAAAGUAACUUGACACCCAACCAUCUUGAAGAGGGGAUUUGAAAUGCUGUAAUUUUAUCCCAGCUUUGUUCAGCCAUGACAAGUGACCUGUCAGAUGCUUAGUAUUGUAAUAACCUCAUUUCCCUUUCCAAAUUUAGAGUAUCUUUAAUACUAUUUUUUUUAGACAGAGUCUCGAUCUGUCACCCAGGCUGUAGUGCAAUGGCCGCAGUCUUGGCUUACUGCAACCUCCAUCUCCCGGGUUCAAGCGAUUCUGCCUCAGCCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	79	275	427	525	790	1017	1154	1157	1162
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	11:93741417:-	11:93738494:-	11:93738342:-	11:93738244:-	11:93737110:-	11:93736182:-	11:93736045:-	11:93736042:-	11:93736037:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL KTLz8piFYdwC BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 834aFpha8RvT ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8