General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000395397
Gene ID:	ENSG00000025434
Gene Name:	NR1H3
Sequence (UNICHARACTER ENCODING)	CUGGGGUGCGGGGAAAAGGCGCAGUCUCGGUGGGAUUGCGUGCAGGAGGGUCGUGGUCUGGCUGUGGCGGAGGAGCAUAAGAAGACUCUGCGGUGGAGCUGUGGAAGCCAGGCGCACAGGAUGCAAGCAGCCAGGCCCAGGGAGGCAGCAGCUGCAUCCUCAGAGAGGAAGCCAGGAUGCCCCACUCUGCUGGGGGUACUGCAGGGGUGGGGCUGGAGGCUGCAGAGCCCACAGCCCUGCUCACCAGGGCAGAGCCCCCUUCAGAACCCACAGAGAUCCGUCCACAAAAGCGGAAAAAGGGGCCAGCCCCCAAAAUGCUGGGGAACGAGCUAUGCAGCGUGUGUGGGGACAAGGCCUCGGGCUUCCACUACAAUGUUCUGAGCUGCGAGGGCUGCAAGGGAUUCUUCCGCCGCAGCGUCAUCAAGGGAGCGCACUACAUCUGCCACAGUGGCGGCCACUGCCCCAUGGACACCUACAUGCGUCGCAAGUGCCAGGAGUGUCGGCUUCGCAAAUGCCGUCAGGCUGGCAUGCGGGAGGAGUGUGUCCUGUCAGAAGAACAGAUCCGCCUGAAGAAACUGAAGCGGCAAGAGGAGGAACAGGCUCAUGCCACAPCCUUGCCCCCCAGGGCUUCCUCACCCCCCCAAAUCCUGCCCCAGCUCAGCCCGGAACAACUGGGCAUGAUCGAGAAGCUCGUCGCUGCCCAGCAACAGUGUAACCGGCGCUCCUUUUCUGACCGGCUUCGAGUCACGCCUUGGCCCAUGGCACCAGAUCCCCAUAGCCGGGAGGCCCGUCAGCAGCGCUUUGCCCACUUCACUGAGCUGGCCAUCGUCUCUGUGCAGGAGAUAGUUGЖCUUUGCUAAЖCAGCUACCCGGCUUCCUGCAGCUCAGCCGGGAGGACCAGAUUGCCCUGCUGAAGACCUCUGCGAUCGAGGUGAUGCUUCUGGAGACAUCUCGGAGGUACAACCCUGGGAGUGAGAGUAUCACCUUCCUCAAGGAUUUCAGUUAUAACCGGGAAGACUUUGCCAAAGCAGGGCUGCAAGUGGAAUUCAUCAACCCCAUCUUCGAGUUCUCCAGGGCCAUGAAUGAGCUGCAACUCAAUGAUGCCGAGUUUGCCUUGCUCAUUGCUAUCAGCAUCUUCUCUGCAGЖCCGGCCCAACGUGCAGGACCAGCUCCAGGUAGAGAGGCUGCAGCACACAUAUGUGGAAGCCCUGCAUGCCUACGUCUCCAPCCACCAUCCCCAUGACCGACUGAUGUUCCCACGGAUGCUAAUGAAACUGGUGAGCCUCCGGACCCUGAGCAGCGUCCACUCAGAGCAAGUGUUUGCACUGCGUCUGCAGGACAAAAAGCUCCCACCGCUGCUCUCUGAGAUCUGGGAUGUGCACGAAUGЖCUGUUCUGUCCCCAUAUUUUCUGUUUUCUUGGCCGGAUGGCUGAGGCCUGGUGGCUGCCUCCUAGAAGUGGAЖCAGЖCUGAGAAGGGCAAЖCAUUCCUGGGAGCUGGGCAAGGAGA
Sequence (SHORT NAMES ENCODING)	CUGGGGUGCGGGGAAAAGGCGCAGUCUCGGUGGGAUUGCGUGCAGGAGGGUCGUGGUCUGGCUGUGGCGGAGGAGCAUAAGAAGACUCUGCGGUGGAGCUGUGGAAGCCAGGCGCACAGGAUGCAAGCAGCCAGGCCCAGGGAGGCAGCAGCUGCAUCCUCAGAGAGGAAGCCAGGAUGCCCCACUCUGCUGGGGGUACUGCAGGGGUGGGGCUGGAGGCUGCAGAGCCCACAGCCCUGCUCACCAGGGCAGAGCCCCCUUCAGAACCCACAGAGAUCCGUCCACAAAAGCGGAAAAAGGGGCCAGCCCCCAAAAUGCUGGGGAACGAGCUAUGCAGCGUGUGUGGGGACAAGGCCUCGGGCUUCCACUACAAUGUUCUGAGCUGCGAGGGCUGCAAGGGAUUCUUCCGCCGCAGCGUCAUCAAGGGAGCGCACUACAUCUGCCACAGUGGCGGCCACUGCCCCAUGGACACCUACAUGCGUCGCAAGUGCCAGGAGUGUCGGCUUCGCAAAUGCCGUCAGGCUGGCAUGCGGGAGGAGUGUGUCCUGUCAGAAGAACAGAUCCGCCUGAAGAAACUGAAGCGGCAAGAGGAGGAACAGGCUCAUGCCACAYCCUUGCCCCCCAGGGCUUCCUCACCCCCCCAAAUCCUGCCCCAGCUCAGCCCGGAACAACUGGGCAUGAUCGAGAAGCUCGUCGCUGCCCAGCAACAGUGUAACCGGCGCUCCUUUUCUGACCGGCUUCGAGUCACGCCUUGGCCCAUGGCACCAGAUCCCCAUAGCCGGGAGGCCCGUCAGCAGCGCUUUGCCCACUUCACUGAGCUGGCCAUCGUCUCUGUGCAGGAGAUAGUUGm6ACUUUGCUAAm6ACAGCUACCCGGCUUCCUGCAGCUCAGCCGGGAGGACCAGAUUGCCCUGCUGAAGACCUCUGCGAUCGAGGUGAUGCUUCUGGAGACAUCUCGGAGGUACAACCCUGGGAGUGAGAGUAUCACCUUCCUCAAGGAUUUCAGUUAUAACCGGGAAGACUUUGCCAAAGCAGGGCUGCAAGUGGAAUUCAUCAACCCCAUCUUCGAGUUCUCCAGGGCCAUGAAUGAGCUGCAACUCAAUGAUGCCGAGUUUGCCUUGCUCAUUGCUAUCAGCAUCUUCUCUGCAGm6ACCGGCCCAACGUGCAGGACCAGCUCCAGGUAGAGAGGCUGCAGCACACAUAUGUGGAAGCCCUGCAUGCCUACGUCUCCAYCCACCAUCCCCAUGACCGACUGAUGUUCCCACGGAUGCUAAUGAAACUGGUGAGCCUCCGGACCCUGAGCAGCGUCCACUCAGAGCAAGUGUUUGCACUGCGUCUGCAGGACAAAAAGCUCCCACCGCUGCUCUCUGAGAUCUGGGAUGUGCACGAAUGm6ACUGUUCUGUCCCCAUAUUUUCUGUUUUCUUGGCCGGAUGGCUGAGGCCUGGUGGCUGCCUCCUAGAAGUGGAm6ACAGm6ACUGAGAAGGGCAAm6ACAUUCCUGGGAGCUGGGCAAGGAGA
Sequence (MODOMICS CODE ENCODING)	CUGGGGUGCGGGGAAAAGGCGCAGUCUCGGUGGGAUUGCGUGCAGGAGGGUCGUGGUCUGGCUGUGGCGGAGGAGCAUAAGAAGACUCUGCGGUGGAGCUGUGGAAGCCAGGCGCACAGGAUGCAAGCAGCCAGGCCCAGGGAGGCAGCAGCUGCAUCCUCAGAGAGGAAGCCAGGAUGCCCCACUCUGCUGGGGGUACUGCAGGGGUGGGGCUGGAGGCUGCAGAGCCCACAGCCCUGCUCACCAGGGCAGAGCCCCCUUCAGAACCCACAGAGAUCCGUCCACAAAAGCGGAAAAAGGGGCCAGCCCCCAAAAUGCUGGGGAACGAGCUAUGCAGCGUGUGUGGGGACAAGGCCUCGGGCUUCCACUACAAUGUUCUGAGCUGCGAGGGCUGCAAGGGAUUCUUCCGCCGCAGCGUCAUCAAGGGAGCGCACUACAUCUGCCACAGUGGCGGCCACUGCCCCAUGGACACCUACAUGCGUCGCAAGUGCCAGGAGUGUCGGCUUCGCAAAUGCCGUCAGGCUGGCAUGCGGGAGGAGUGUGUCCUGUCAGAAGAACAGAUCCGCCUGAAGAAACUGAAGCGGCAAGAGGAGGAACAGGCUCAUGCCACA2000000009UCCUUGCCCCCCAGGGCUUCCUCACCCCCCCAAAUCCUGCCCCAGCUCAGCCCGGAACAACUGGGCAUGAUCGAGAAGCUCGUCGCUGCCCAGCAACAGUGUAACCGGCGCUCCUUUUCUGACCGGCUUCGAGUCACGCCUUGGCCCAUGGCACCAGAUCCCCAUAGCCGGGAGGCCCGUCAGCAGCGCUUUGCCCACUUCACUGAGCUGGCCAUCGUCUCUGUGCAGGAGAUAGUUG2000000006ACUUUGCUAA2000000006ACAGCUACCCGGCUUCCUGCAGCUCAGCCGGGAGGACCAGAUUGCCCUGCUGAAGACCUCUGCGAUCGAGGUGAUGCUUCUGGAGACAUCUCGGAGGUACAACCCUGGGAGUGAGAGUAUCACCUUCCUCAAGGAUUUCAGUUAUAACCGGGAAGACUUUGCCAAAGCAGGGCUGCAAGUGGAAUUCAUCAACCCCAUCUUCGAGUUCUCCAGGGCCAUGAAUGAGCUGCAACUCAAUGAUGCCGAGUUUGCCUUGCUCAUUGCUAUCAGCAUCUUCUCUGCAG2000000006ACCGGCCCAACGUGCAGGACCAGCUCCAGGUAGAGAGGCUGCAGCACACAUAUGUGGAAGCCCUGCAUGCCUACGUCUCCA2000000009UCCACCAUCCCCAUGACCGACUGAUGUUCCCACGGAUGCUAAUGAAACUGGUGAGCCUCCGGACCCUGAGCAGCGUCCACUCAGAGCAAGUGUUUGCACUGCGUCUGCAGGACAAAAAGCUCCCACCGCUGCUCUCUGAGAUCUGGGAUGUGCACGAAUG2000000006ACUGUUCUGUCCCCAUAUUUUCUGUUUUCUUGGCCGGAUGGCUGAGGCCUGGUGGCUGCCUCCUAGAAGUGGA2000000006ACAG2000000006ACUGAGAAGGGCAA2000000006ACAUUCCUGGGAGCUGGGCAAGGAGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	612	850	860	1144	1225	1385	1458	1462	1476
Modification Positions	Y	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	11:47261312:+	11:47261647:+	11:47261657:+	11:47268261:+	11:47268342:+	11:47268696:+	11:47268769:+	11:47268773:+	11:47268787:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB Lny8GcCeVGc9 bXBqJigD9oV3 dknfVe6BK8aP	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 nfCHyrYzE6fB Lny8GcCeVGc9 bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8