General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000525078
Gene ID:	ENSG00000170242
Gene Name:	USP47
Sequence (UNICHARACTER ENCODING)	CUUAAAUCAGACAGUUACAGAAUUCAAACAACUGAUUUCAAAGGCCAUCCAUUUACCUGCUGAAACAAUGAGAAUAGUGCUGGAACGCUGCUACAAUGAUUUGCGUCUUCUCAGUGUCUCCAGUAAAACCCUGAAAGCUGAAGGAUUUUUUAGAAGUAACAAGGUGUUUGUUGAAAGCUCCGAGACUUUGGAUUACCAGAUGGCCUUUGCAGACUCUCAUUUAUGGAAACUCCUGGAUCGGCAUGCAAAUACAAUCAGAUUAUUUGUUUUGCUACCUGAACAAUCCCCAGUAUCUUAUUCCAAAAGGЖCAGCAUACCAGAAAGCUGGAGGCGAUUCUGGUAAUGUGGAUGAUGЖCUGUGAAAGAGUCAAAGGЖCCUGUAGGAAGCCUAAAGUCUGUGGAAGCUAUUCUAGAAGAAAGCACUGAAAAACUCAAAAGCUUGUCACUGCAGCAACAGCAGGAUGGAGAUAAUGGGGACAGCAGCAAAAGUACUGAGACAAGUGЖCUUUGAAAACAUCGAAUCACCUCUCAAUGAGAGGGACUCUUCAGCAUCAGUGGAUAAUAGAGAЖCUUGAACAGCAUAUUCAGACUUCUGAUCCAGAAAAUUUUCAGUCUGAAGAACGAUCAGACUCAGAUGUGAAUAAUGACAGGAGUACAAGUUCAGUGGЖCAGUGAUAUUCUUAGCUCCAGUCAUAGCAGUGAUACUUUGUGCAAUGCAGACAAUGCUCAGAUCCCUUUGGCUAAUGGЖCUUGACUCUCACAGUAUCACAAGUAGUAGAAGAACGAAAGCAAAUGAAGGGAAAAAAGAAACAUGGGAUACAGCAGAAGAAGACUCUGGAЖCUGAUAGUGAAUAUGAUGAGAGUGGCAAGAGUAGGGGAGAAAUGCAGUACAUGUAUUUCAAAGCUGAACCUUAUGCUGCAGAUGAAGGUUCUGGGGAAGGACAUAAAUGUAUGUACUUCAAAAGAAAAACGGUCCUUGAAACAGC
Sequence (SHORT NAMES ENCODING)	CUUAAAUCAGACAGUUACAGAAUUCAAACAACUGAUUUCAAAGGCCAUCCAUUUACCUGCUGAAACAAUGAGAAUAGUGCUGGAACGCUGCUACAAUGAUUUGCGUCUUCUCAGUGUCUCCAGUAAAACCCUGAAAGCUGAAGGAUUUUUUAGAAGUAACAAGGUGUUUGUUGAAAGCUCCGAGACUUUGGAUUACCAGAUGGCCUUUGCAGACUCUCAUUUAUGGAAACUCCUGGAUCGGCAUGCAAAUACAAUCAGAUUAUUUGUUUUGCUACCUGAACAAUCCCCAGUAUCUUAUUCCAAAAGGm6ACAGCAUACCAGAAAGCUGGAGGCGAUUCUGGUAAUGUGGAUGAUGm6ACUGUGAAAGAGUCAAAGGm6ACCUGUAGGAAGCCUAAAGUCUGUGGAAGCUAUUCUAGAAGAAAGCACUGAAAAACUCAAAAGCUUGUCACUGCAGCAACAGCAGGAUGGAGAUAAUGGGGACAGCAGCAAAAGUACUGAGACAAGUGm6ACUUUGAAAACAUCGAAUCACCUCUCAAUGAGAGGGACUCUUCAGCAUCAGUGGAUAAUAGAGAm6ACUUGAACAGCAUAUUCAGACUUCUGAUCCAGAAAAUUUUCAGUCUGAAGAACGAUCAGACUCAGAUGUGAAUAAUGACAGGAGUACAAGUUCAGUGGm6ACAGUGAUAUUCUUAGCUCCAGUCAUAGCAGUGAUACUUUGUGCAAUGCAGACAAUGCUCAGAUCCCUUUGGCUAAUGGm6ACUUGACUCUCACAGUAUCACAAGUAGUAGAAGAACGAAAGCAAAUGAAGGGAAAAAAGAAACAUGGGAUACAGCAGAAGAAGACUCUGGAm6ACUGAUAGUGAAUAUGAUGAGAGUGGCAAGAGUAGGGGAGAAAUGCAGUACAUGUAUUUCAAAGCUGAACCUUAUGCUGCAGAUGAAGGUUCUGGGGAAGGACAUAAAUGUAUGUACUUCAAAAGAAAAACGGUCCUUGAAACAGC
Sequence (MODOMICS CODE ENCODING)	CUUAAAUCAGACAGUUACAGAAUUCAAACAACUGAUUUCAAAGGCCAUCCAUUUACCUGCUGAAACAAUGAGAAUAGUGCUGGAACGCUGCUACAAUGAUUUGCGUCUUCUCAGUGUCUCCAGUAAAACCCUGAAAGCUGAAGGAUUUUUUAGAAGUAACAAGGUGUUUGUUGAAAGCUCCGAGACUUUGGAUUACCAGAUGGCCUUUGCAGACUCUCAUUUAUGGAAACUCCUGGAUCGGCAUGCAAAUACAAUCAGAUUAUUUGUUUUGCUACCUGAACAAUCCCCAGUAUCUUAUUCCAAAAGG2000000006ACAGCAUACCAGAAAGCUGGAGGCGAUUCUGGUAAUGUGGAUGAUG2000000006ACUGUGAAAGAGUCAAAGG2000000006ACCUGUAGGAAGCCUAAAGUCUGUGGAAGCUAUUCUAGAAGAAAGCACUGAAAAACUCAAAAGCUUGUCACUGCAGCAACAGCAGGAUGGAGAUAAUGGGGACAGCAGCAAAAGUACUGAGACAAGUG2000000006ACUUUGAAAACAUCGAAUCACCUCUCAAUGAGAGGGACUCUUCAGCAUCAGUGGAUAAUAGAGA2000000006ACUUGAACAGCAUAUUCAGACUUCUGAUCCAGAAAAUUUUCAGUCUGAAGAACGAUCAGACUCAGAUGUGAAUAAUGACAGGAGUACAAGUUCAGUGG2000000006ACAGUGAUAUUCUUAGCUCCAGUCAUAGCAGUGAUACUUUGUGCAAUGCAGACAAUGCUCAGAUCCCUUUGGCUAAUGG2000000006ACUUGACUCUCACAGUAUCACAAGUAGUAGAAGAACGAAAGCAAAUGAAGGGAAAAAAGAAACAUGGGAUACAGCAGAAGAAGACUCUGGA2000000006ACUGAUAGUGAAUAUGAUGAGAGUGGCAAGAGUAGGGGAGAAAUGCAGUACAUGUAUUUCAAAGCUGAACCUUAUGCUGCAGAUGAAGGUUCUGGGGAAGGACAUAAAUGUAUGUACUUCAAAAGAAAAACGGUCCUUGAAACAGC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	308	354	373	501	565	663	742	833
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	11:11942479:+	11:11942525:+	11:11942544:+	11:11942672:+	11:11942736:+	11:11942834:+	11:11942913:+	11:11943004:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	3TeAZFYFxgvp 5FhTyQVy2tKW 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U dknfVe6BK8aP	6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G dknfVe6BK8aP	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G dknfVe6BK8aP	3TeAZFYFxgvp 5FhTyQVy2tKW 6UuHp6YApVKv aHkqKEJkRYyb gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8