General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000544983
Gene ID:	ENSG00000255717
Gene Name:	SNHG1
Sequence (UNICHARACTER ENCODING)	CUUUGUCUUUUUCUUUUAUUUUCUUUUGAGCGAUUGUGCGAACAUAGCAUAGCACGCACUAUGCCUUCUGUGUUGUAGCUGCCUGGCCAGGGCGACUGGCGGAUAAGGUCUUGUGCGUGGCCUCGAGGCUUAAAAGUAGCAGUGGGGCUUUGUGAAGGACAAAAUGGCGAUGGCGGGCCGUGUAGGUCCCCCUUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAUGGGCCCUGCAAGCCUCUUGCUUAGCCGUCUGUUCAGAAAAUAGCGUUUUCGAAAUGCCCUGAGUUGACCUAAUGUCUUAUUGGGCUCCUGUCUGCAGGAUUUACGCGCACGUUGGЖACCGAAGAGAGCUCUGUUGUUGCAAUGUUCAGCCCACAAGAGCUUACUGGUGAAGGAAUGGGACAAGACCCAUCUPUAUGCAAAGCCAGCGUUACЖGUAAUGUUCCAGGUAGGUGUACAUGGUUUAUGCUCUUACAGAGGAGACCUUGUAGAUAACCACUCCAUGAUGAACACAAAAUGACAAGCAUAUGGCUGAACUUUCAAGUGAUGUCAUCUUACUACUGAGAAGUGAGAGAGAGGUCUUAAGGGGUCUUUGAAUGACUAUUUUUAGGUACAUAAAAUGCUUUCCUCUGUUGUCUACAGCAUCUCAUAAUCUAUCCUGGGGAAUUCAGCUGCCUCCCAGGGUGAAUACAGGUAAUUAUCCAAAUUGGUGUAUGUCAUCUUUGUAAAUGUUCAAGAAAACAAGUGGCCGGCGGAACAAUGUUUUUUGGCGCCUUCCAUCUUGUUCCUCUUGAAAUGAUUUUCUGGGGAGGGAGAUCGCAACCCGGUACUACAGUUCUUGUAAGGGUGUGCUGUUACCCUCAPCCAUAUAUCGAUCACGUUACUGUCAGAUGAUUUGAAUUGAUAAGCUGAUGUUCUGUGAGGUACAAAAGUUAAUAGCAUGUUAGAGUUCUGAUGGCAGUUGUUGUUUAUGAAUAAGCUUCAUUCCAUCCUAAUACCUUAAAAUAACUAAUUUGCUUUCCUUUCCAGGUAUUCCUGAUGACAGUCUGCCUCUAUCUUACAGAGCAGCUUGUUGCUAUAUACCAUUGAAAAGCCUUCAGAGCUGAGAGGUACUACUAACCAAUAACCUGCUUGGCUCAAAGGGCCAGCACCUUCUCUCUAAAGCCCAAGAGGAGUUUGAGGAAAACUAGGUGUCUGUGUUCACUCCAGGCUGAAGUUACAGGUCUGAGCAAAUAAGGUGUAUAAAAAAUGGAAUCUGUCUUGGAGGACAUCAGAAGGUGAAUUUUCCAAGUUCUUGGACAACCUAGCUGUUGAAAAGCUUUCUGGGUUUGGGGGGUAUUUCAGAUGUACCUUAAAGUGUUAGCAGACACЖGAUUЖAGЖCACUGGGAGCCAAUGAAЖCAGCAGUUGAGGGUUUGCUGUGUAUCACAUUUCUGUAUUUUAUCACCCCCUUCCUGCAACAUUAUUUAUCUGGAAUCUACCUGCCCUUUUGUUUUUUAGAUACAAGGGCUUGGUUUUGUUACCCAGGCUGGUUUCAAGGCCAUAGCUPUAAGAGAUCCUCUCACCACAGAUUUCCAAAGUGCUGGGAUUGCAGGUGUGAUUCAUGGCACCCAGACUUUGCUGCCUUUCUUACЖUGAUCCAGGCCCAGAACCCAAЖCUCAGGCACUGUAUAGAUGACCACUUUCGUAAЖCUACUGACCUAGCUUGUUGCCAAUUGUUGAUUGAACUUCCCAUAЖCUCCACUUCGUGUCUGUUCCUCUGUAUACAGCCACCUUCUGUUCCCGUCAUGAGCCUPUAGGUCUCCAUUUGCAUAUUGCAAAUACUAUGUUCCAUGUAGGUAGCUCAUUCAGGGCCUUGCUCUUCACUUCAAAAAAGGUUCCCUUGAGGACUGGCUGUCAAUUUGUGUUGCUGUGUUGGUUGUUGAUGAAAAUAAUAAAAU
Sequence (SHORT NAMES ENCODING)	CUUUGUCUUUUUCUUUUAUUUUCUUUUGAGCGAUUGUGCGAACAUAGCAUAGCACGCACUAUGCCUUCUGUGUUGUAGCUGCCUGGCCAGGGCGACUGGCGGAUAAGGUCUUGUGCGUGGCCUCGAGGCUUAAAAGUAGCAGUGGGGCUUUGUGAAGGACAAAAUGGCGAUGGCGGGCCGUGUAGGUCCCCCUUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAUGGGCCCUGCAAGCCUCUUGCUUAGCCGUCUGUUCAGAAAAUAGCGUUUUCGAAAUGCCCUGAGUUGACCUAAUGUCUUAUUGGGCUCCUGUCUGCAGGAUUUACGCGCACGUUGGm6AACCGAAGAGAGCUCUGUUGUUGCAAUGUUCAGCCCACAAGAGCUUACUGGUGAAGGAAUGGGACAAGACCCAUCUYUAUGCAAAGCCAGCGUUACm6AGUAAUGUUCCAGGUAGGUGUACAUGGUUUAUGCUCUUACAGAGGAGACCUUGUAGAUAACCACUCCAUGAUGAACACAAAAUGACAAGCAUAUGGCUGAACUUUCAAGUGAUGUCAUCUUACUACUGAGAAGUGAGAGAGAGGUCUUAAGGGGUCUUUGAAUGACUAUUUUUAGGUACAUAAAAUGCUUUCCUCUGUUGUCUACAGCAUCUCAUAAUCUAUCCUGGGGAAUUCAGCUGCCUCCCAGGGUGAAUACAGGUAAUUAUCCAAAUUGGUGUAUGUCAUCUUUGUAAAUGUUCAAGAAAACAAGUGGCCGGCGGAACAAUGUUUUUUGGCGCCUUCCAUCUUGUUCCUCUUGAAAUGAUUUUCUGGGGAGGGAGAUCGCAACCCGGUACUACAGUUCUUGUAAGGGUGUGCUGUUACCCUCAYCCAUAUAUCGAUCACGUUACUGUCAGAUGAUUUGAAUUGAUAAGCUGAUGUUCUGUGAGGUACAAAAGUUAAUAGCAUGUUAGAGUUCUGAUGGCAGUUGUUGUUUAUGAAUAAGCUUCAUUCCAUCCUAAUACCUUAAAAUAACUAAUUUGCUUUCCUUUCCAGGUAUUCCUGAUGACAGUCUGCCUCUAUCUUACAGAGCAGCUUGUUGCUAUAUACCAUUGAAAAGCCUUCAGAGCUGAGAGGUACUACUAACCAAUAACCUGCUUGGCUCAAAGGGCCAGCACCUUCUCUCUAAAGCCCAAGAGGAGUUUGAGGAAAACUAGGUGUCUGUGUUCACUCCAGGCUGAAGUUACAGGUCUGAGCAAAUAAGGUGUAUAAAAAAUGGAAUCUGUCUUGGAGGACAUCAGAAGGUGAAUUUUCCAAGUUCUUGGACAACCUAGCUGUUGAAAAGCUUUCUGGGUUUGGGGGGUAUUUCAGAUGUACCUUAAAGUGUUAGCAGACACm6AGAUUm6AAGm6ACACUGGGAGCCAAUGAAm6ACAGCAGUUGAGGGUUUGCUGUGUAUCACAUUUCUGUAUUUUAUCACCCCCUUCCUGCAACAUUAUUUAUCUGGAAUCUACCUGCCCUUUUGUUUUUUAGAUACAAGGGCUUGGUUUUGUUACCCAGGCUGGUUUCAAGGCCAUAGCUYUAAGAGAUCCUCUCACCACAGAUUUCCAAAGUGCUGGGAUUGCAGGUGUGAUUCAUGGCACCCAGACUUUGCUGCCUUUCUUACm6AUGAUCCAGGCCCAGAACCCAAm6ACUCAGGCACUGUAUAGAUGACCACUUUCGUAAm6ACUACUGACCUAGCUUGUUGCCAAUUGUUGAUUGAACUUCCCAUAm6ACUCCACUUCGUGUCUGUUCCUCUGUAUACAGCCACCUUCUGUUCCCGUCAUGAGCCUYUAGGUCUCCAUUUGCAUAUUGCAAAUACUAUGUUCCAUGUAGGUAGCUCAUUCAGGGCCUUGCUCUUCACUUCAAAAAAGGUUCCCUUGAGGACUGGCUGUCAAUUUGUGUUGCUGUGUUGGUUGUUGAUGAAAAUAAUAAAAU
Sequence (MODOMICS CODE ENCODING)	CUUUGUCUUUUUCUUUUAUUUUCUUUUGAGCGAUUGUGCGAACAUAGCAUAGCACGCACUAUGCCUUCUGUGUUGUAGCUGCCUGGCCAGGGCGACUGGCGGAUAAGGUCUUGUGCGUGGCCUCGAGGCUUAAAAGUAGCAGUGGGGCUUUGUGAAGGACAAAAUGGCGAUGGCGGGCCGUGUAGGUCCCCCUUCCUAUGAUGAGGACCUUUUCACAGACCUGUACUGAGCUCCGUGAGGAUAAAUAACUCUGAGGAGAUGGGCCCUGCAAGCCUCUUGCUUAGCCGUCUGUUCAGAAAAUAGCGUUUUCGAAAUGCCCUGAGUUGACCUAAUGUCUUAUUGGGCUCCUGUCUGCAGGAUUUACGCGCACGUUGG2000000006AACCGAAGAGAGCUCUGUUGUUGCAAUGUUCAGCCCACAAGAGCUUACUGGUGAAGGAAUGGGACAAGACCCAUCU2000000009UUAUGCAAAGCCAGCGUUAC2000000006AGUAAUGUUCCAGGUAGGUGUACAUGGUUUAUGCUCUUACAGAGGAGACCUUGUAGAUAACCACUCCAUGAUGAACACAAAAUGACAAGCAUAUGGCUGAACUUUCAAGUGAUGUCAUCUUACUACUGAGAAGUGAGAGAGAGGUCUUAAGGGGUCUUUGAAUGACUAUUUUUAGGUACAUAAAAUGCUUUCCUCUGUUGUCUACAGCAUCUCAUAAUCUAUCCUGGGGAAUUCAGCUGCCUCCCAGGGUGAAUACAGGUAAUUAUCCAAAUUGGUGUAUGUCAUCUUUGUAAAUGUUCAAGAAAACAAGUGGCCGGCGGAACAAUGUUUUUUGGCGCCUUCCAUCUUGUUCCUCUUGAAAUGAUUUUCUGGGGAGGGAGAUCGCAACCCGGUACUACAGUUCUUGUAAGGGUGUGCUGUUACCCUCA2000000009UCCAUAUAUCGAUCACGUUACUGUCAGAUGAUUUGAAUUGAUAAGCUGAUGUUCUGUGAGGUACAAAAGUUAAUAGCAUGUUAGAGUUCUGAUGGCAGUUGUUGUUUAUGAAUAAGCUUCAUUCCAUCCUAAUACCUUAAAAUAACUAAUUUGCUUUCCUUUCCAGGUAUUCCUGAUGACAGUCUGCCUCUAUCUUACAGAGCAGCUUGUUGCUAUAUACCAUUGAAAAGCCUUCAGAGCUGAGAGGUACUACUAACCAAUAACCUGCUUGGCUCAAAGGGCCAGCACCUUCUCUCUAAAGCCCAAGAGGAGUUUGAGGAAAACUAGGUGUCUGUGUUCACUCCAGGCUGAAGUUACAGGUCUGAGCAAAUAAGGUGUAUAAAAAAUGGAAUCUGUCUUGGAGGACAUCAGAAGGUGAAUUUUCCAAGUUCUUGGACAACCUAGCUGUUGAAAAGCUUUCUGGGUUUGGGGGGUAUUUCAGAUGUACCUUAAAGUGUUAGCAGACAC2000000006AGAUU2000000006AAG2000000006ACACUGGGAGCCAAUGAA2000000006ACAGCAGUUGAGGGUUUGCUGUGUAUCACAUUUCUGUAUUUUAUCACCCCCUUCCUGCAACAUUAUUUAUCUGGAAUCUACCUGCCCUUUUGUUUUUUAGAUACAAGGGCUUGGUUUUGUUACCCAGGCUGGUUUCAAGGCCAUAGCU2000000009UUAAGAGAUCCUCUCACCACAGAUUUCCAAAGUGCUGGGAUUGCAGGUGUGAUUCAUGGCACCCAGACUUUGCUGCCUUUCUUAC2000000006AUGAUCCAGGCCCAGAACCCAA2000000006ACUCAGGCACUGUAUAGAUGACCACUUUCGUAA2000000006ACUACUGACCUAGCUUGUUGCCAAUUGUUGAUUGAACUUCCCAUA2000000006ACUCCACUUCGUGUCUGUUCCUCUGUAUACAGCCACCUUCUGUUCCCGUCAUGAGCCU2000000009UUAGGUCUCCAUUUGCAUAUUGCAAAUACUAUGUUCCAUGUAGGUAGCUCAUUCAGGGCCUUGCUCUUCACUUCAAAAAAGGUUCCCUUGAGGACUGGCUGUCAAUUUGUGUUGCUGUGUUGGUUGUUGAUGAAAAUAAUAAAAU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	376	452	472	900	1407	1412	1415	1433	1581	1666	1688	1721	1766	1824
Modification Positions	m6A	Y	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	11:62855448:-	11:62855165:-	11:62855145:-	11:62854717:-	11:62852562:-	11:62852557:-	11:62852554:-	11:62852536:-	11:62852388:-	11:62852303:-	11:62852281:-	11:62852248:-	11:62852203:-	11:62852145:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8