General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000533820
Gene ID:	ENSG00000014216
Gene Name:	CAPN1
Sequence (UNICHARACTER ENCODING)	GAAAGUCGGGCCGAACGGGGCAGGGACUUACCCAAGGUCACGCAGCGAGCCCGGUCCCCCUGCGUUCCCCGGGGAGCGCUGAGCCGGGACGCGGCGGUGGGGUGGGGAAGGGGAGUGGCGCGGCCCUGCGGGGUGAGGCUGCCGUUUGCUGAGUGUCCGGCAGGGGUCUGCUCGCUGCCAGCCCGGCCCCUCCUCAGAGCAGCUGCCGCAGCCCGAGGAUGUCGGAGGAGAUCAUCACGCCGGUGUACUGCACUGGGGUGUCAGCCCAAGUGCAGAAGCAGCGGGCCAGGGAGCUGGGCCUGGGCCGCCAUGAGAAUGCCAUCAAGUACCUGGGCCAGGAUUAUGAGCAGCUGCGGGUGCGAUGCCUGCAGAGUGGGACCCUCUUCCGUGAUGAGGCCUUCCCCCCGGUACCCCAGAGCCUGGGUUACAAGGACCUGGGUCCCAAUUCCUCCAAGACCUAUGGCAUCAAGUGGAAGCGUCCCACGGAACUGCUGUCAAACCCCCAGUUCAUUGUGGAUGGAGCUACCCGCACAGACAUCUGCCAGGGAGCACUGGGGGACUGCUGGCUCUUGGCGGCCAUCGCCUCCCUCACUCUCAACGACACCCPCCUGCACCGAGUGGUUCCGCACGGCCAGAGCUUCCAGAAUGGCUAUGCCGGCAUCUUCCAUUUCCAGCUGUGGCAAUUUGGGGAGUGGGUGGACGUGGUCGUGGAUGACCUGCUGCCCAUCAAGGACGGGAAGCUAGUGUUCGUGCACUCUGCCGAAGGCAACGAGUUCUGGAGCGCCCUGCUUGAGAAGGCCUAUGCCAAGGUAAAUGGCAGCUACGAGGCCCUGUCAGGGGGCAGCACCUCAGAGGGCUUUGAGGACUUCACAGGCGGGGUUACCGAGUGGUACGAGUUGCGCAAGGCUCCCAGUGACCUCUACCAGAUCAPCCUCAAGGCGCUGGAGCGGGGCUCCCUGCUGGGCUGCUCCAUAGACAUCUCCAGCGUUCUAGЖCAUGGAGGCCAUCACUUUCAAGAAGUUGGUGAAGGGCCAUGCCUACUCUGUGACCGGGGCCAAGCAGGUGAACUACCGAGGCCAGGUGGUGAGCCUGAUCCGGAUGCGGAACCCCUGGGGCGAGGUGGAGUGGACGGGAGCCUGGAGCGACAGCUCCUCAGAGUGGAACAACGUGGACCCAUAUGAACGGGACCAGCUCCGGGUCAAGAUGGAGGACGGGGAGUUCUGGAUGUCAUUCCGAGACUUCAUGCGGGAGUUCACCCGCCUGGAGAUCUGCAACCUCACACCCGACGCCCUCAAGAGCCGGACCAUCCGCAAAUGGAACACCACACUCUACGAAGGCACCUGGCGGCGGGGGAGCACCGCGGGGGGCUGCCGAAACUACCCAGCCACCUUCUGGGUGAACCCUCAGUUCAAGAUCCGGCUGGAUGAGACGGAUGACCCGGACGACUACGGGGACCGCGAGUCAGGCUGCAGCUUCGUGCUCGCCCUUAUGCAGAAGCЖCCGUCGCCGCGAGCGCCGCUUCGGCCGCGACAUGGAGACUAUUGGCUUCGCGGUCUACGAGGUCCCUCCGGAGCUGGUGGGCCAGCCGGCCGUACACUUGAAGCGUGACUUCUUCCUGGCCAAUGCGUCUCGGGCGCGCUCAGAGCAGUUCAUCAACCUGCGAGAGGUCAGCACCCGCUUCCGCCUGCCACCCGGGGAGUAUGUGGUGGUGCCCUCCACCUUCGAGCCCAACAAGGAGGGCGACUUCGUGCUGCGCUUCUUCUCAGAGAAGAGUGCUGGGACUGUGGAGCUGGAUGACCAGAUCCAGGCCAAUCUCCCCGAUGAGCAAGUGCUCUCAGAAGAGGAGAUUGACGAGAACUUCAAGGCCCUCUUCAGGCAGCUGGCAGGGGAGGACAUGGAGAUCAGCGUGAAGGAGUUGCGGACAAUCCUCAAUAGGAUCAUCAGCAAACЖCAAAGЖCCUGCGGACCAAGGGCUUCAGCCUAGAGUCGUGCCGCAGCAUGGUGAACCUCAUGGAUCGUGAUGGCAAUGGGAAGCUGGGCCUGGUGGAGUUCAACAPCCUGUGGAACCGCAUCCGGAAUUACCUGUCCAUCUUCCGGAAGUUUGACCUGGACAAGUCGGGCAGCAUGAGUGCCUACGAGAUGCGGAUGGCCAUUGAGUCGGCAGGCUUCAAGCUCAACAAGAAGCUGUACGAGCUCAUCAUCACCCGCUACUCGGAGCCCGACCUGGCGGUCGACUUUGACAAUUUCGUUUGCUGCCUGGUGCGGCUAGAGACCAUGUUCCGAUUUUUCAAAACUCUGGACACAGAUCUGGAUGGAGUUGUGACCUUUGACUUGUUUAAGUGGUUGCAGCUGACCAUGUUUGCAUGAGGCAGGGACUCGGUCCCCCUUGCCGUGCUCCCCUCCCUCCUCGUCUGCCAAGCCUCGCCUCCUACCACACCACACCAGGCCACCCCAGCUGCAAGUGCCUUCCUUGGAGCAGAGAGGCAGCCUCGUCCPCCUGUCCCCUCUCCUCCCAGCCACCAUCGUUCAUCUGCUCCGGGCAGAЖCUGUGUGGCCCCUGCCUGUGCCAGCCAUGGGCUCGGGAUGGЖCUCCCUGGGCCCCACCCAUUGCCAAGCCAGGAAGGCAGCUUUCGCUUGUUCCUGCCUCGGGЖCAGCCCCGGGUUUCCCCAGCAPCCUGAUGUGUCCCCUCUCCCCACUUCAGAGGCCACCCACUCAGCACCACCGGCCUGGCCUUGCCUGCAGACUAUAAЖCUAUAACCACUAGCUCGACACAGUCUGCAGUCCAGGCGUGUGGAGCCGCCPCCCGGCUCGGGGAGGCCCCGGGGCUGGGAACGCCUGUGCCUUCCUGCGCCGAAGCCAACGCCCCCUCUGUCCUUCCCUGGCCCUGCUGCCGACCAGGAGCUGCCCAGCCUGUGGGCGGUCGGCCUUCCCUCCUUCGCUCCUUUUUUAUAUUAGUGAUUUUAAAGGGGЖCUCUUCAGGGЖCUUGUGUACUGGUUAUGGGGGUGCCAGAGGCACUAGGCUUGGGGUGGGGAGGUCCCGUGUUCCAUAUAGAGGAACCCCAAAUAAUAAAAGGCCCCACAUCUGUCUGUGA
Sequence (SHORT NAMES ENCODING)	GAAAGUCGGGCCGAACGGGGCAGGGACUUACCCAAGGUCACGCAGCGAGCCCGGUCCCCCUGCGUUCCCCGGGGAGCGCUGAGCCGGGACGCGGCGGUGGGGUGGGGAAGGGGAGUGGCGCGGCCCUGCGGGGUGAGGCUGCCGUUUGCUGAGUGUCCGGCAGGGGUCUGCUCGCUGCCAGCCCGGCCCCUCCUCAGAGCAGCUGCCGCAGCCCGAGGAUGUCGGAGGAGAUCAUCACGCCGGUGUACUGCACUGGGGUGUCAGCCCAAGUGCAGAAGCAGCGGGCCAGGGAGCUGGGCCUGGGCCGCCAUGAGAAUGCCAUCAAGUACCUGGGCCAGGAUUAUGAGCAGCUGCGGGUGCGAUGCCUGCAGAGUGGGACCCUCUUCCGUGAUGAGGCCUUCCCCCCGGUACCCCAGAGCCUGGGUUACAAGGACCUGGGUCCCAAUUCCUCCAAGACCUAUGGCAUCAAGUGGAAGCGUCCCACGGAACUGCUGUCAAACCCCCAGUUCAUUGUGGAUGGAGCUACCCGCACAGACAUCUGCCAGGGAGCACUGGGGGACUGCUGGCUCUUGGCGGCCAUCGCCUCCCUCACUCUCAACGACACCCYCCUGCACCGAGUGGUUCCGCACGGCCAGAGCUUCCAGAAUGGCUAUGCCGGCAUCUUCCAUUUCCAGCUGUGGCAAUUUGGGGAGUGGGUGGACGUGGUCGUGGAUGACCUGCUGCCCAUCAAGGACGGGAAGCUAGUGUUCGUGCACUCUGCCGAAGGCAACGAGUUCUGGAGCGCCCUGCUUGAGAAGGCCUAUGCCAAGGUAAAUGGCAGCUACGAGGCCCUGUCAGGGGGCAGCACCUCAGAGGGCUUUGAGGACUUCACAGGCGGGGUUACCGAGUGGUACGAGUUGCGCAAGGCUCCCAGUGACCUCUACCAGAUCAYCCUCAAGGCGCUGGAGCGGGGCUCCCUGCUGGGCUGCUCCAUAGACAUCUCCAGCGUUCUAGm6ACAUGGAGGCCAUCACUUUCAAGAAGUUGGUGAAGGGCCAUGCCUACUCUGUGACCGGGGCCAAGCAGGUGAACUACCGAGGCCAGGUGGUGAGCCUGAUCCGGAUGCGGAACCCCUGGGGCGAGGUGGAGUGGACGGGAGCCUGGAGCGACAGCUCCUCAGAGUGGAACAACGUGGACCCAUAUGAACGGGACCAGCUCCGGGUCAAGAUGGAGGACGGGGAGUUCUGGAUGUCAUUCCGAGACUUCAUGCGGGAGUUCACCCGCCUGGAGAUCUGCAACCUCACACCCGACGCCCUCAAGAGCCGGACCAUCCGCAAAUGGAACACCACACUCUACGAAGGCACCUGGCGGCGGGGGAGCACCGCGGGGGGCUGCCGAAACUACCCAGCCACCUUCUGGGUGAACCCUCAGUUCAAGAUCCGGCUGGAUGAGACGGAUGACCCGGACGACUACGGGGACCGCGAGUCAGGCUGCAGCUUCGUGCUCGCCCUUAUGCAGAAGCm6ACCGUCGCCGCGAGCGCCGCUUCGGCCGCGACAUGGAGACUAUUGGCUUCGCGGUCUACGAGGUCCCUCCGGAGCUGGUGGGCCAGCCGGCCGUACACUUGAAGCGUGACUUCUUCCUGGCCAAUGCGUCUCGGGCGCGCUCAGAGCAGUUCAUCAACCUGCGAGAGGUCAGCACCCGCUUCCGCCUGCCACCCGGGGAGUAUGUGGUGGUGCCCUCCACCUUCGAGCCCAACAAGGAGGGCGACUUCGUGCUGCGCUUCUUCUCAGAGAAGAGUGCUGGGACUGUGGAGCUGGAUGACCAGAUCCAGGCCAAUCUCCCCGAUGAGCAAGUGCUCUCAGAAGAGGAGAUUGACGAGAACUUCAAGGCCCUCUUCAGGCAGCUGGCAGGGGAGGACAUGGAGAUCAGCGUGAAGGAGUUGCGGACAAUCCUCAAUAGGAUCAUCAGCAAACm6ACAAAGm6ACCUGCGGACCAAGGGCUUCAGCCUAGAGUCGUGCCGCAGCAUGGUGAACCUCAUGGAUCGUGAUGGCAAUGGGAAGCUGGGCCUGGUGGAGUUCAACAYCCUGUGGAACCGCAUCCGGAAUUACCUGUCCAUCUUCCGGAAGUUUGACCUGGACAAGUCGGGCAGCAUGAGUGCCUACGAGAUGCGGAUGGCCAUUGAGUCGGCAGGCUUCAAGCUCAACAAGAAGCUGUACGAGCUCAUCAUCACCCGCUACUCGGAGCCCGACCUGGCGGUCGACUUUGACAAUUUCGUUUGCUGCCUGGUGCGGCUAGAGACCAUGUUCCGAUUUUUCAAAACUCUGGACACAGAUCUGGAUGGAGUUGUGACCUUUGACUUGUUUAAGUGGUUGCAGCUGACCAUGUUUGCAUGAGGCAGGGACUCGGUCCCCCUUGCCGUGCUCCCCUCCCUCCUCGUCUGCCAAGCCUCGCCUCCUACCACACCACACCAGGCCACCCCAGCUGCAAGUGCCUUCCUUGGAGCAGAGAGGCAGCCUCGUCCYCCUGUCCCCUCUCCUCCCAGCCACCAUCGUUCAUCUGCUCCGGGCAGAm6ACUGUGUGGCCCCUGCCUGUGCCAGCCAUGGGCUCGGGAUGGm6ACUCCCUGGGCCCCACCCAUUGCCAAGCCAGGAAGGCAGCUUUCGCUUGUUCCUGCCUCGGGm6ACAGCCCCGGGUUUCCCCAGCAYCCUGAUGUGUCCCCUCUCCCCACUUCAGAGGCCACCCACUCAGCACCACCGGCCUGGCCUUGCCUGCAGACUAUAAm6ACUAUAACCACUAGCUCGACACAGUCUGCAGUCCAGGCGUGUGGAGCCGCCYCCCGGCUCGGGGAGGCCCCGGGGCUGGGAACGCCUGUGCCUUCCUGCGCCGAAGCCAACGCCCCCUCUGUCCUUCCCUGGCCCUGCUGCCGACCAGGAGCUGCCCAGCCUGUGGGCGGUCGGCCUUCCCUCCUUCGCUCCUUUUUUAUAUUAGUGAUUUUAAAGGGGm6ACUCUUCAGGGm6ACUUGUGUACUGGUUAUGGGGGUGCCAGAGGCACUAGGCUUGGGGUGGGGAGGUCCCGUGUUCCAUAUAGAGGAACCCCAAAUAAUAAAAGGCCCCACAUCUGUCUGUGA
Sequence (MODOMICS CODE ENCODING)	GAAAGUCGGGCCGAACGGGGCAGGGACUUACCCAAGGUCACGCAGCGAGCCCGGUCCCCCUGCGUUCCCCGGGGAGCGCUGAGCCGGGACGCGGCGGUGGGGUGGGGAAGGGGAGUGGCGCGGCCCUGCGGGGUGAGGCUGCCGUUUGCUGAGUGUCCGGCAGGGGUCUGCUCGCUGCCAGCCCGGCCCCUCCUCAGAGCAGCUGCCGCAGCCCGAGGAUGUCGGAGGAGAUCAUCACGCCGGUGUACUGCACUGGGGUGUCAGCCCAAGUGCAGAAGCAGCGGGCCAGGGAGCUGGGCCUGGGCCGCCAUGAGAAUGCCAUCAAGUACCUGGGCCAGGAUUAUGAGCAGCUGCGGGUGCGAUGCCUGCAGAGUGGGACCCUCUUCCGUGAUGAGGCCUUCCCCCCGGUACCCCAGAGCCUGGGUUACAAGGACCUGGGUCCCAAUUCCUCCAAGACCUAUGGCAUCAAGUGGAAGCGUCCCACGGAACUGCUGUCAAACCCCCAGUUCAUUGUGGAUGGAGCUACCCGCACAGACAUCUGCCAGGGAGCACUGGGGGACUGCUGGCUCUUGGCGGCCAUCGCCUCCCUCACUCUCAACGACACCC2000000009UCCUGCACCGAGUGGUUCCGCACGGCCAGAGCUUCCAGAAUGGCUAUGCCGGCAUCUUCCAUUUCCAGCUGUGGCAAUUUGGGGAGUGGGUGGACGUGGUCGUGGAUGACCUGCUGCCCAUCAAGGACGGGAAGCUAGUGUUCGUGCACUCUGCCGAAGGCAACGAGUUCUGGAGCGCCCUGCUUGAGAAGGCCUAUGCCAAGGUAAAUGGCAGCUACGAGGCCCUGUCAGGGGGCAGCACCUCAGAGGGCUUUGAGGACUUCACAGGCGGGGUUACCGAGUGGUACGAGUUGCGCAAGGCUCCCAGUGACCUCUACCAGAUCA2000000009UCCUCAAGGCGCUGGAGCGGGGCUCCCUGCUGGGCUGCUCCAUAGACAUCUCCAGCGUUCUAG2000000006ACAUGGAGGCCAUCACUUUCAAGAAGUUGGUGAAGGGCCAUGCCUACUCUGUGACCGGGGCCAAGCAGGUGAACUACCGAGGCCAGGUGGUGAGCCUGAUCCGGAUGCGGAACCCCUGGGGCGAGGUGGAGUGGACGGGAGCCUGGAGCGACAGCUCCUCAGAGUGGAACAACGUGGACCCAUAUGAACGGGACCAGCUCCGGGUCAAGAUGGAGGACGGGGAGUUCUGGAUGUCAUUCCGAGACUUCAUGCGGGAGUUCACCCGCCUGGAGAUCUGCAACCUCACACCCGACGCCCUCAAGAGCCGGACCAUCCGCAAAUGGAACACCACACUCUACGAAGGCACCUGGCGGCGGGGGAGCACCGCGGGGGGCUGCCGAAACUACCCAGCCACCUUCUGGGUGAACCCUCAGUUCAAGAUCCGGCUGGAUGAGACGGAUGACCCGGACGACUACGGGGACCGCGAGUCAGGCUGCAGCUUCGUGCUCGCCCUUAUGCAGAAGC2000000006ACCGUCGCCGCGAGCGCCGCUUCGGCCGCGACAUGGAGACUAUUGGCUUCGCGGUCUACGAGGUCCCUCCGGAGCUGGUGGGCCAGCCGGCCGUACACUUGAAGCGUGACUUCUUCCUGGCCAAUGCGUCUCGGGCGCGCUCAGAGCAGUUCAUCAACCUGCGAGAGGUCAGCACCCGCUUCCGCCUGCCACCCGGGGAGUAUGUGGUGGUGCCCUCCACCUUCGAGCCCAACAAGGAGGGCGACUUCGUGCUGCGCUUCUUCUCAGAGAAGAGUGCUGGGACUGUGGAGCUGGAUGACCAGAUCCAGGCCAAUCUCCCCGAUGAGCAAGUGCUCUCAGAAGAGGAGAUUGACGAGAACUUCAAGGCCCUCUUCAGGCAGCUGGCAGGGGAGGACAUGGAGAUCAGCGUGAAGGAGUUGCGGACAAUCCUCAAUAGGAUCAUCAGCAAAC2000000006ACAAAG2000000006ACCUGCGGACCAAGGGCUUCAGCCUAGAGUCGUGCCGCAGCAUGGUGAACCUCAUGGAUCGUGAUGGCAAUGGGAAGCUGGGCCUGGUGGAGUUCAACA2000000009UCCUGUGGAACCGCAUCCGGAAUUACCUGUCCAUCUUCCGGAAGUUUGACCUGGACAAGUCGGGCAGCAUGAGUGCCUACGAGAUGCGGAUGGCCAUUGAGUCGGCAGGCUUCAAGCUCAACAAGAAGCUGUACGAGCUCAUCAUCACCCGCUACUCGGAGCCCGACCUGGCGGUCGACUUUGACAAUUUCGUUUGCUGCCUGGUGCGGCUAGAGACCAUGUUCCGAUUUUUCAAAACUCUGGACACAGAUCUGGAUGGAGUUGUGACCUUUGACUUGUUUAAGUGGUUGCAGCUGACCAUGUUUGCAUGAGGCAGGGACUCGGUCCCCCUUGCCGUGCUCCCCUCCCUCCUCGUCUGCCAAGCCUCGCCUCCUACCACACCACACCAGGCCACCCCAGCUGCAAGUGCCUUCCUUGGAGCAGAGAGGCAGCCUCGUCC2000000009UCCUGUCCCCUCUCCUCCCAGCCACCAUCGUUCAUCUGCUCCGGGCAGA2000000006ACUGUGUGGCCCCUGCCUGUGCCAGCCAUGGGCUCGGGAUGG2000000006ACUCCCUGGGCCCCACCCAUUGCCAAGCCAGGAAGGCAGCUUUCGCUUGUUCCUGCCUCGGG2000000006ACAGCCCCGGGUUUCCCCAGCA2000000009UCCUGAUGUGUCCCCUCUCCCCACUUCAGAGGCCACCCACUCAGCACCACCGGCCUGGCCUUGCCUGCAGACUAUAA2000000006ACUAUAACCACUAGCUCGACACAGUCUGCAGUCCAGGCGUGUGGAGCCGCC2000000009UCCCGGCUCGGGGAGGCCCCGGGGCUGGGAACGCCUGUGCCUUCCUGCGCCGAAGCCAACGCCCCCUCUGUCCUUCCCUGGCCCUGCUGCCGACCAGGAGCUGCCCAGCCUGUGGGCGGUCGGCCUUCCCUCCUUCGCUCCUUUUUUAUAUUAGUGAUUUUAAAGGGG2000000006ACUCUUCAGGG2000000006ACUUGUGUACUGGUUAUGGGGGUGCCAGAGGCACUAGGCUUGGGGUGGGGAGGUCCCGUGUUCCAUAUAGAGGAACCCCAAAUAAUAAAAGGCCCCACAUCUGUCUGUGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	607	931	994	1498	1948	1954	2053	2492	2541	2583	2645	2667	2744	2795	2963	2974
Modification Positions	Y	Y	m6A	m6A	m6A	m6A	Y	Y	m6A	m6A	m6A	Y	m6A	Y	m6A	m6A
Genomic Coordinates	11:65183525:+	11:65186292:+	11:65187231:+	11:65204797:+	11:65209323:+	11:65209329:+	11:65209889:+	11:65211415:+	11:65211464:+	11:65211506:+	11:65211568:+	11:65211590:+	11:65211667:+	11:65211718:+	11:65211886:+	11:65211897:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
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