General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000662291
Gene ID:	ENSG00000251381
Gene Name:	LINC00958
Sequence (UNICHARACTER ENCODING)	GAGAUCUGACGGCUUAAAAGUGUGGCACUUCCUACCUCACUCUCUCUCUCUCUCCUGCUGCAUUGUGAAGAAACUGCUUGCUUCCCUCUCACCCUCUGCAGUUUCCUGAGGCCUCCCCAGCCAUGCGGAACGGCCAGAUGCAGUGCCUCAUGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGGGAGGAUUGCUUGAGCCUGCUUCCAUAUCGUAAACUGCCUUGGAACCAAUUACCACUACCAGGGAGACAAACUAUUGCUUAGAGGAUGCUGACAGGAGCAGCAUGCCAAAAUUGGAAGAAGGAGAAAGUUUAAGCUCUCCUCACUAUGAGUUUUCAAGUAUAAAAGЖCUUUUUCUUCCACGAUUUUGAGAACAACUGAGGЖCUCUUGUGACCAGGACAACAGGGAAGCUUGCAGCAAGAUAGCUCCAGGUUGGAUUCAUGCUUCGCACCCCAAGGGCUGCCAGCCAGAGAGGAGGAGAAGCAAUCACUCCUGCAGUUUCUGAЖCACUACACAGACGCCAGGUAGCUUCUUCAGGAGAACAGCCCUCUGAGGAGGCAGGAAGAGGAGGCUUAUCUUUCAGCAGCCGGAGCUGCUGAGAUCUCUGGGCAGAUUAAGCUCUCUCUAAUGGAUGGGCUCCAGCCUGGCACAUUCAGUGGAGAGGGAUCCACUCAUCCAUCAUCAACAUAAUAUGGUCCUCCCUGCACUUCACAGUGUCCUCUUGCUAUUGAAAAGGCUUUUUUGCCUUCUCAAGUUUCUUUGUCAACAGUCUACAGGAAGAAGCUCAGGCCGCCACCGGCAGAGGUGAAUGCAAGCUCACGUUUUAUUUCUGЖCUGCUUAAUCAUUGCCUCGAUCACUGCUCAAGCUCUGCCUUUGUUUCCAAAGGUUACCUGUGGGAAAACUUCUUUUUCUAUGCUGAAAUUAAUAGGGAGGCAAAGAUGAGUCCACUGAUAAGCAGAGCCUUAAAЖCUCACAUAGAGAAACAЖCUUUGCUGGAGUGUGUGUGAGUGAACCACUAAGGAAUCAGAUAGUGUGAUGGCAGUUAUCAUUGCAGGUUAAGЖCAUUUCUACAAAUAUUUCGACAUCUCCAUAUACUCACUCCUUUCCCCCCUGAGUGGAGAGЖCUCAGCUACCAAGAGAGGAAGCUCAAAAAAAACAGAAGCUUCAAACAAACAACCAACCAAAAAAAAAAAAAAACUGUGGGUUCAUCAGAGGUGGUAGGGAAGACAAAAACAUGGGAGGAGCAGCUGGGCACGGUGGCUCAAGCCUGUAAUCCCAGCACUUUGCGAGGCUGAGGUGGGUGGAUCACCUGAGGUCAGGAGUUCGAGACCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUACAAAAAAUUAGCCGGGCGUUGUGGUACGCACCUGUAAUCCCAGCUACUCCGGAGGCUGAGGCAGCAGAAUCGCUUGAACCCAGGAGGCAGAGGUUGCAACGAGCCAAGAUCGCACCAUUGCACUCCAGCCUGGGCAACAAGAGCGAAACUCCAUCUAAAAAAAACAAACAAGCAAACAAACAAAAAACACGGGAGGAGCAAUAAAAAGGAAUCCAUGCUUUGAUUUUUUUUUUUAGUGAGAGGAAGGGAAGGCUGCUGCCUCUCACUUCUCCCUGUUUUGUUGUUCUUUUAAGUAGCAUGUGUCACUCUGUAUAUAUCCUGUCCAUGUGUUUUCUUUUAUUAUUAUUUGUCCACUUGCCUAGAAUGAAAACUCCAUGGGAGCAUG
Sequence (SHORT NAMES ENCODING)	GAGAUCUGACGGCUUAAAAGUGUGGCACUUCCUACCUCACUCUCUCUCUCUCUCCUGCUGCAUUGUGAAGAAACUGCUUGCUUCCCUCUCACCCUCUGCAGUUUCCUGAGGCCUCCCCAGCCAUGCGGAACGGCCAGAUGCAGUGCCUCAUGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGGGAGGAUUGCUUGAGCCUGCUUCCAUAUCGUAAACUGCCUUGGAACCAAUUACCACUACCAGGGAGACAAACUAUUGCUUAGAGGAUGCUGACAGGAGCAGCAUGCCAAAAUUGGAAGAAGGAGAAAGUUUAAGCUCUCCUCACUAUGAGUUUUCAAGUAUAAAAGm6ACUUUUUCUUCCACGAUUUUGAGAACAACUGAGGm6ACUCUUGUGACCAGGACAACAGGGAAGCUUGCAGCAAGAUAGCUCCAGGUUGGAUUCAUGCUUCGCACCCCAAGGGCUGCCAGCCAGAGAGGAGGAGAAGCAAUCACUCCUGCAGUUUCUGAm6ACACUACACAGACGCCAGGUAGCUUCUUCAGGAGAACAGCCCUCUGAGGAGGCAGGAAGAGGAGGCUUAUCUUUCAGCAGCCGGAGCUGCUGAGAUCUCUGGGCAGAUUAAGCUCUCUCUAAUGGAUGGGCUCCAGCCUGGCACAUUCAGUGGAGAGGGAUCCACUCAUCCAUCAUCAACAUAAUAUGGUCCUCCCUGCACUUCACAGUGUCCUCUUGCUAUUGAAAAGGCUUUUUUGCCUUCUCAAGUUUCUUUGUCAACAGUCUACAGGAAGAAGCUCAGGCCGCCACCGGCAGAGGUGAAUGCAAGCUCACGUUUUAUUUCUGm6ACUGCUUAAUCAUUGCCUCGAUCACUGCUCAAGCUCUGCCUUUGUUUCCAAAGGUUACCUGUGGGAAAACUUCUUUUUCUAUGCUGAAAUUAAUAGGGAGGCAAAGAUGAGUCCACUGAUAAGCAGAGCCUUAAAm6ACUCACAUAGAGAAACAm6ACUUUGCUGGAGUGUGUGUGAGUGAACCACUAAGGAAUCAGAUAGUGUGAUGGCAGUUAUCAUUGCAGGUUAAGm6ACAUUUCUACAAAUAUUUCGACAUCUCCAUAUACUCACUCCUUUCCCCCCUGAGUGGAGAGm6ACUCAGCUACCAAGAGAGGAAGCUCAAAAAAAACAGAAGCUUCAAACAAACAACCAACCAAAAAAAAAAAAAAACUGUGGGUUCAUCAGAGGUGGUAGGGAAGACAAAAACAUGGGAGGAGCAGCUGGGCACGGUGGCUCAAGCCUGUAAUCCCAGCACUUUGCGAGGCUGAGGUGGGUGGAUCACCUGAGGUCAGGAGUUCGAGACCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUACAAAAAAUUAGCCGGGCGUUGUGGUACGCACCUGUAAUCCCAGCUACUCCGGAGGCUGAGGCAGCAGAAUCGCUUGAACCCAGGAGGCAGAGGUUGCAACGAGCCAAGAUCGCACCAUUGCACUCCAGCCUGGGCAACAAGAGCGAAACUCCAUCUAAAAAAAACAAACAAGCAAACAAACAAAAAACACGGGAGGAGCAAUAAAAAGGAAUCCAUGCUUUGAUUUUUUUUUUUAGUGAGAGGAAGGGAAGGCUGCUGCCUCUCACUUCUCCCUGUUUUGUUGUUCUUUUAAGUAGCAUGUGUCACUCUGUAUAUAUCCUGUCCAUGUGUUUUCUUUUAUUAUUAUUUGUCCACUUGCCUAGAAUGAAAACUCCAUGGGAGCAUG
Sequence (MODOMICS CODE ENCODING)	GAGAUCUGACGGCUUAAAAGUGUGGCACUUCCUACCUCACUCUCUCUCUCUCUCCUGCUGCAUUGUGAAGAAACUGCUUGCUUCCCUCUCACCCUCUGCAGUUUCCUGAGGCCUCCCCAGCCAUGCGGAACGGCCAGAUGCAGUGCCUCAUGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGGGAGGAUUGCUUGAGCCUGCUUCCAUAUCGUAAACUGCCUUGGAACCAAUUACCACUACCAGGGAGACAAACUAUUGCUUAGAGGAUGCUGACAGGAGCAGCAUGCCAAAAUUGGAAGAAGGAGAAAGUUUAAGCUCUCCUCACUAUGAGUUUUCAAGUAUAAAAG2000000006ACUUUUUCUUCCACGAUUUUGAGAACAACUGAGG2000000006ACUCUUGUGACCAGGACAACAGGGAAGCUUGCAGCAAGAUAGCUCCAGGUUGGAUUCAUGCUUCGCACCCCAAGGGCUGCCAGCCAGAGAGGAGGAGAAGCAAUCACUCCUGCAGUUUCUGA2000000006ACACUACACAGACGCCAGGUAGCUUCUUCAGGAGAACAGCCCUCUGAGGAGGCAGGAAGAGGAGGCUUAUCUUUCAGCAGCCGGAGCUGCUGAGAUCUCUGGGCAGAUUAAGCUCUCUCUAAUGGAUGGGCUCCAGCCUGGCACAUUCAGUGGAGAGGGAUCCACUCAUCCAUCAUCAACAUAAUAUGGUCCUCCCUGCACUUCACAGUGUCCUCUUGCUAUUGAAAAGGCUUUUUUGCCUUCUCAAGUUUCUUUGUCAACAGUCUACAGGAAGAAGCUCAGGCCGCCACCGGCAGAGGUGAAUGCAAGCUCACGUUUUAUUUCUG2000000006ACUGCUUAAUCAUUGCCUCGAUCACUGCUCAAGCUCUGCCUUUGUUUCCAAAGGUUACCUGUGGGAAAACUUCUUUUUCUAUGCUGAAAUUAAUAGGGAGGCAAAGAUGAGUCCACUGAUAAGCAGAGCCUUAAA2000000006ACUCACAUAGAGAAACA2000000006ACUUUGCUGGAGUGUGUGUGAGUGAACCACUAAGGAAUCAGAUAGUGUGAUGGCAGUUAUCAUUGCAGGUUAAG2000000006ACAUUUCUACAAAUAUUUCGACAUCUCCAUAUACUCACUCCUUUCCCCCCUGAGUGGAGAG2000000006ACUCAGCUACCAAGAGAGGAAGCUCAAAAAAAACAGAAGCUUCAAACAAACAACCAACCAAAAAAAAAAAAAAACUGUGGGUUCAUCAGAGGUGGUAGGGAAGACAAAAACAUGGGAGGAGCAGCUGGGCACGGUGGCUCAAGCCUGUAAUCCCAGCACUUUGCGAGGCUGAGGUGGGUGGAUCACCUGAGGUCAGGAGUUCGAGACCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUACAAAAAAUUAGCCGGGCGUUGUGGUACGCACCUGUAAUCCCAGCUACUCCGGAGGCUGAGGCAGCAGAAUCGCUUGAACCCAGGAGGCAGAGGUUGCAACGAGCCAAGAUCGCACCAUUGCACUCCAGCCUGGGCAACAAGAGCGAAACUCCAUCUAAAAAAAACAAACAAGCAAACAAACAAAAAACACGGGAGGAGCAAUAAAAAGGAAUCCAUGCUUUGAUUUUUUUUUUUAGUGAGAGGAAGGGAAGGCUGCUGCCUCUCACUUCUCCCUGUUUUGUUGUUCUUUUAAGUAGCAUGUGUCACUCUGUAUAUAUCCUGUCCAUGUGUUUUCUUUUAUUAUUAUUUGUCCACUUGCCUAGAAUGAAAACUCCAUGGGAGCAUG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	349	383	505	831	966	983	1057	1118
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	11:12980863:-	11:12980829:-	11:12980707:-	11:12980381:-	11:12980246:-	11:12980229:-	11:12980155:-	11:12980094:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	aivdrAsbdKEU jNkxUQNx8GRd NjZ8bGGJsNSR V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	5FhTyQVy2tKW nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9