Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000278174
Gene ID: ENSG00000148925
Gene Name: BTBD10
Sequence (UNICHARACTER ENCODING) GCAGCCGCCUCAGUGGCUUCCUCCACAGCCACCUCCGGAGGGAUCUGGCUGAGGAGGAAGUGGAGGUGUCACUGGCCCCGGCCUUUGCCCCAAUCUUGUGUGGGCACUGAAGGGGGACUACAGGUUCGAGAGUUAUGGGUGCUACAUGUGUGCUUUCAGAGCAGUAGUGUGAGGAAGCUUGGAGUGGGAUGGCAGGACGGCCUCAUCCCUAUGAUGGUAACUCCAGUGAUCCAGAGAAUUGGGAUCGGAAAUUGCAUAGUAGACCUCGUAAACUUUAUAAACAUUCAAGUACUUCCUCGCGUAUUGCUAAAGGAGGAGUUGACCACACCAAAAUGAGUCUACAUGGUGCUAGUGGGGGACAUGAGAGAUCAAGAGAUAGACGAAGGUCAAGUGACAGAUCACGAGAUUCAUCUCAUGAAAGAACGGAGUCUCAGCUCACUCCUUGUAUUAGAAAUGUGACUUCUCCAACACGACAGCACCAUGUUGAACGAGAAAAAGAUCACAGUUCCUCUCGUCCAAGCAGUCCGCGUCCUCAAAAAGCAUCCCCAAAUGGUUCCAUUAGCAGUGCUGGGAACAGCAGCAGAAЖCAGUAGUCAGUCAAGUUCAGAUGGUAGCUGUAAGACAGCUGGGGAGAUGGUGUUUGUAUAUGAAAAUGCAAAAGAAGGAGCUCGGAAUAUAAGAACGUCAGAACGAGUGACACUAAUAGUGGAUAЖCACUAGAUUUGUUGUAGЖCCCAPCCAUUUUUACUGCACAGCCAAAUACAAUGUUGGGCAGGAUGUUUGGAUCUGGCCGAGAACAUAACUPUACACGACCCAAUGAGAAAGGAGAGUAUGAGGUGGCAGAGGGAAUUGGUUCCACUGUGUUUCGAGCGAUUCUGGAUUACUAUAAAACAGGAAUAAUCCGUUGUCCUGAUGGCAUAUCUAUUCCUGAACUGAGAGAAGCAUGUGACUAUCUUUGUAUCUCUUUUGAAUAUAGCACUAUUAAAUGUAGAGAUCUCAGUGCCCUAAUGCAUGAGUUAUCAAAUGAUGGUGCUCGUAGACAAUUUGAAUUUUAUCUGGAAGAAAUGAUCCUCCCUCUCAUGGUAGCUAGUGCCCAGAGUGGGGAACGGGAAUGUCAUAUAGUGGUGCUUACAGAUGAUGAUGUGGUUGAUUGGGAUGAAGAAUAUCCACCACAGAUGGGAGAAGAAUAUUCACAAAUUAUUUAUAGCACAAAAUUAUAUAGAUUUUUCAAGUAUAUUGAAAACAGAGAUGUGGCCAAGUCAGUUUUGAAGGAGAGGGGUCUUAAGAAGAUUAGAUUGGGAAUAGAAGGUUAUCCUACCUACAAAGAAAAAGUAAAGAAAAGGCCUGGAGGCCGCCCAGAAGUGAUCUACAACUAUGUCCAAAGACCCUPUAUUCGAAUGUCCUGGGAGAAGGAAGAAGGAAAGAGUCGGCAUGUAGЖCUUUCAGUGUGUAAAGAGUAAAUCUAUCACCAAUCUUGCAGCAGCUGCAGCAGACAUUCCCCAGGACCAGCUGGUAGUCAUGCAPCCAACUCCACAAGUGGAUGAGCUGGAUAUUCUCCCUAUCCAUCCCCCUUCUGGCAACAGUGACCUCGAUCCUGAUGCACAGAAUCCAAUGCUGUGAUGCUGAUCUUCCUUGAAACCAUAGCAUGCUACUCUUCACAGUGACGUUGUACUCUCCUCAUUCUGCACUGCAAGGCCACUCUUCUUCAUUGUGAGAUGCACAUAACAAUGUUUAGGAUAUUGCAGUGUAGGCUUUUUUAAAGACCAAAGGUAGCUGAAUGGUUUUUUUUUAAAUGAGUACAACUCUAGCAUUUUGAAGUUCCAGUUGUAAAUGUAUUUGUUUACCAGUAGGUUUGUGAAAUUGGUUCUUUGUAUGGGGGAUGGUCCUUUUUCACACAGCUAGGUCUUUUCAGAAGUGGUGGAAAUUGGCAGCUGGGGUACUUUCAGUUUGGЖCUGAUAUUCAUCACACCUCAGAUAAAAUGCAGAGUAAUAUAUAGUUGCACUPUAUAAAUGGUGGUUAAAUGGAAAUGUUCAAGCCAUUUUAUAGUUGUGAUGCACAAUAUAAUUUAAGUGCUUCUGUCAAAGUAUUCCUCCAGUACAAUUUGUAUAGUUUGCUGCCCUUGAUGAGCAAAAAGUAUUUAUCUUGGGCUUAUCUGAAUGAUCAGGAUGAGAUUUAAUGCCCAUAUCUUACCAGUUCAGUUAUCUCCAGAGCCAUUUCACCCUPUAGAGUGAGUCACAUGCAGGGAGUGUGAAUGUCAGAGGUGGUUUAUUAUCCAGUCUGCCUUACCCUUAAUCUGUUCACAGAUAUUUAUUUACUAAUGCUUUUUUUUUCUUAAGAGUUAUGGGAUAGGAAAAUGAAGUGUUUGCUCUUCAUUUACUAAAUGAUUGUAAACUUGAGUUUUUCAUCAAAAUAAAAUUCCAUUGUUUUAAUGUUUCUGACCAAA
Sequence (SHORT NAMES ENCODING) GCAGCCGCCUCAGUGGCUUCCUCCACAGCCACCUCCGGAGGGAUCUGGCUGAGGAGGAAGUGGAGGUGUCACUGGCCCCGGCCUUUGCCCCAAUCUUGUGUGGGCACUGAAGGGGGACUACAGGUUCGAGAGUUAUGGGUGCUACAUGUGUGCUUUCAGAGCAGUAGUGUGAGGAAGCUUGGAGUGGGAUGGCAGGACGGCCUCAUCCCUAUGAUGGUAACUCCAGUGAUCCAGAGAAUUGGGAUCGGAAAUUGCAUAGUAGACCUCGUAAACUUUAUAAACAUUCAAGUACUUCCUCGCGUAUUGCUAAAGGAGGAGUUGACCACACCAAAAUGAGUCUACAUGGUGCUAGUGGGGGACAUGAGAGAUCAAGAGAUAGACGAAGGUCAAGUGACAGAUCACGAGAUUCAUCUCAUGAAAGAACGGAGUCUCAGCUCACUCCUUGUAUUAGAAAUGUGACUUCUCCAACACGACAGCACCAUGUUGAACGAGAAAAAGAUCACAGUUCCUCUCGUCCAAGCAGUCCGCGUCCUCAAAAAGCAUCCCCAAAUGGUUCCAUUAGCAGUGCUGGGAACAGCAGCAGAAm6ACAGUAGUCAGUCAAGUUCAGAUGGUAGCUGUAAGACAGCUGGGGAGAUGGUGUUUGUAUAUGAAAAUGCAAAAGAAGGAGCUCGGAAUAUAAGAACGUCAGAACGAGUGACACUAAUAGUGGAUAm6ACACUAGAUUUGUUGUAGm6ACCCAYCCAUUUUUACUGCACAGCCAAAUACAAUGUUGGGCAGGAUGUUUGGAUCUGGCCGAGAACAUAACUYUACACGACCCAAUGAGAAAGGAGAGUAUGAGGUGGCAGAGGGAAUUGGUUCCACUGUGUUUCGAGCGAUUCUGGAUUACUAUAAAACAGGAAUAAUCCGUUGUCCUGAUGGCAUAUCUAUUCCUGAACUGAGAGAAGCAUGUGACUAUCUUUGUAUCUCUUUUGAAUAUAGCACUAUUAAAUGUAGAGAUCUCAGUGCCCUAAUGCAUGAGUUAUCAAAUGAUGGUGCUCGUAGACAAUUUGAAUUUUAUCUGGAAGAAAUGAUCCUCCCUCUCAUGGUAGCUAGUGCCCAGAGUGGGGAACGGGAAUGUCAUAUAGUGGUGCUUACAGAUGAUGAUGUGGUUGAUUGGGAUGAAGAAUAUCCACCACAGAUGGGAGAAGAAUAUUCACAAAUUAUUUAUAGCACAAAAUUAUAUAGAUUUUUCAAGUAUAUUGAAAACAGAGAUGUGGCCAAGUCAGUUUUGAAGGAGAGGGGUCUUAAGAAGAUUAGAUUGGGAAUAGAAGGUUAUCCUACCUACAAAGAAAAAGUAAAGAAAAGGCCUGGAGGCCGCCCAGAAGUGAUCUACAACUAUGUCCAAAGACCCUYUAUUCGAAUGUCCUGGGAGAAGGAAGAAGGAAAGAGUCGGCAUGUAGm6ACUUUCAGUGUGUAAAGAGUAAAUCUAUCACCAAUCUUGCAGCAGCUGCAGCAGACAUUCCCCAGGACCAGCUGGUAGUCAUGCAYCCAACUCCACAAGUGGAUGAGCUGGAUAUUCUCCCUAUCCAUCCCCCUUCUGGCAACAGUGACCUCGAUCCUGAUGCACAGAAUCCAAUGCUGUGAUGCUGAUCUUCCUUGAAACCAUAGCAUGCUACUCUUCACAGUGACGUUGUACUCUCCUCAUUCUGCACUGCAAGGCCACUCUUCUUCAUUGUGAGAUGCACAUAACAAUGUUUAGGAUAUUGCAGUGUAGGCUUUUUUAAAGACCAAAGGUAGCUGAAUGGUUUUUUUUUAAAUGAGUACAACUCUAGCAUUUUGAAGUUCCAGUUGUAAAUGUAUUUGUUUACCAGUAGGUUUGUGAAAUUGGUUCUUUGUAUGGGGGAUGGUCCUUUUUCACACAGCUAGGUCUUUUCAGAAGUGGUGGAAAUUGGCAGCUGGGGUACUUUCAGUUUGGm6ACUGAUAUUCAUCACACCUCAGAUAAAAUGCAGAGUAAUAUAUAGUUGCACUYUAUAAAUGGUGGUUAAAUGGAAAUGUUCAAGCCAUUUUAUAGUUGUGAUGCACAAUAUAAUUUAAGUGCUUCUGUCAAAGUAUUCCUCCAGUACAAUUUGUAUAGUUUGCUGCCCUUGAUGAGCAAAAAGUAUUUAUCUUGGGCUUAUCUGAAUGAUCAGGAUGAGAUUUAAUGCCCAUAUCUUACCAGUUCAGUUAUCUCCAGAGCCAUUUCACCCUYUAGAGUGAGUCACAUGCAGGGAGUGUGAAUGUCAGAGGUGGUUUAUUAUCCAGUCUGCCUUACCCUUAAUCUGUUCACAGAUAUUUAUUUACUAAUGCUUUUUUUUUCUUAAGAGUUAUGGGAUAGGAAAAUGAAGUGUUUGCUCUUCAUUUACUAAAUGAUUGUAAACUUGAGUUUUUCAUCAAAAUAAAAUUCCAUUGUUUUAAUGUUUCUGACCAAA
Sequence (MODOMICS CODE ENCODING) GCAGCCGCCUCAGUGGCUUCCUCCACAGCCACCUCCGGAGGGAUCUGGCUGAGGAGGAAGUGGAGGUGUCACUGGCCCCGGCCUUUGCCCCAAUCUUGUGUGGGCACUGAAGGGGGACUACAGGUUCGAGAGUUAUGGGUGCUACAUGUGUGCUUUCAGAGCAGUAGUGUGAGGAAGCUUGGAGUGGGAUGGCAGGACGGCCUCAUCCCUAUGAUGGUAACUCCAGUGAUCCAGAGAAUUGGGAUCGGAAAUUGCAUAGUAGACCUCGUAAACUUUAUAAACAUUCAAGUACUUCCUCGCGUAUUGCUAAAGGAGGAGUUGACCACACCAAAAUGAGUCUACAUGGUGCUAGUGGGGGACAUGAGAGAUCAAGAGAUAGACGAAGGUCAAGUGACAGAUCACGAGAUUCAUCUCAUGAAAGAACGGAGUCUCAGCUCACUCCUUGUAUUAGAAAUGUGACUUCUCCAACACGACAGCACCAUGUUGAACGAGAAAAAGAUCACAGUUCCUCUCGUCCAAGCAGUCCGCGUCCUCAAAAAGCAUCCCCAAAUGGUUCCAUUAGCAGUGCUGGGAACAGCAGCAGAA2000000006ACAGUAGUCAGUCAAGUUCAGAUGGUAGCUGUAAGACAGCUGGGGAGAUGGUGUUUGUAUAUGAAAAUGCAAAAGAAGGAGCUCGGAAUAUAAGAACGUCAGAACGAGUGACACUAAUAGUGGAUA2000000006ACACUAGAUUUGUUGUAG2000000006ACCCA2000000009UCCAUUUUUACUGCACAGCCAAAUACAAUGUUGGGCAGGAUGUUUGGAUCUGGCCGAGAACAUAACU2000000009UUACACGACCCAAUGAGAAAGGAGAGUAUGAGGUGGCAGAGGGAAUUGGUUCCACUGUGUUUCGAGCGAUUCUGGAUUACUAUAAAACAGGAAUAAUCCGUUGUCCUGAUGGCAUAUCUAUUCCUGAACUGAGAGAAGCAUGUGACUAUCUUUGUAUCUCUUUUGAAUAUAGCACUAUUAAAUGUAGAGAUCUCAGUGCCCUAAUGCAUGAGUUAUCAAAUGAUGGUGCUCGUAGACAAUUUGAAUUUUAUCUGGAAGAAAUGAUCCUCCCUCUCAUGGUAGCUAGUGCCCAGAGUGGGGAACGGGAAUGUCAUAUAGUGGUGCUUACAGAUGAUGAUGUGGUUGAUUGGGAUGAAGAAUAUCCACCACAGAUGGGAGAAGAAUAUUCACAAAUUAUUUAUAGCACAAAAUUAUAUAGAUUUUUCAAGUAUAUUGAAAACAGAGAUGUGGCCAAGUCAGUUUUGAAGGAGAGGGGUCUUAAGAAGAUUAGAUUGGGAAUAGAAGGUUAUCCUACCUACAAAGAAAAAGUAAAGAAAAGGCCUGGAGGCCGCCCAGAAGUGAUCUACAACUAUGUCCAAAGACCCU2000000009UUAUUCGAAUGUCCUGGGAGAAGGAAGAAGGAAAGAGUCGGCAUGUAG2000000006ACUUUCAGUGUGUAAAGAGUAAAUCUAUCACCAAUCUUGCAGCAGCUGCAGCAGACAUUCCCCAGGACCAGCUGGUAGUCAUGCA2000000009UCCAACUCCACAAGUGGAUGAGCUGGAUAUUCUCCCUAUCCAUCCCCCUUCUGGCAACAGUGACCUCGAUCCUGAUGCACAGAAUCCAAUGCUGUGAUGCUGAUCUUCCUUGAAACCAUAGCAUGCUACUCUUCACAGUGACGUUGUACUCUCCUCAUUCUGCACUGCAAGGCCACUCUUCUUCAUUGUGAGAUGCACAUAACAAUGUUUAGGAUAUUGCAGUGUAGGCUUUUUUAAAGACCAAAGGUAGCUGAAUGGUUUUUUUUUAAAUGAGUACAACUCUAGCAUUUUGAAGUUCCAGUUGUAAAUGUAUUUGUUUACCAGUAGGUUUGUGAAAUUGGUUCUUUGUAUGGGGGAUGGUCCUUUUUCACACAGCUAGGUCUUUUCAGAAGUGGUGGAAAUUGGCAGCUGGGGUACUUUCAGUUUGG2000000006ACUGAUAUUCAUCACACCUCAGAUAAAAUGCAGAGUAAUAUAUAGUUGCACU2000000009UUAUAAAUGGUGGUUAAAUGGAAAUGUUCAAGCCAUUUUAUAGUUGUGAUGCACAAUAUAAUUUAAGUGCUUCUGUCAAAGUAUUCCUCCAGUACAAUUUGUAUAGUUUGCUGCCCUUGAUGAGCAAAAAGUAUUUAUCUUGGGCUUAUCUGAAUGAUCAGGAUGAGAUUUAAUGCCCAUAUCUUACCAGUUCAGUUAUCUCCAGAGCCAUUUCACCCU2000000009UUAGAGUGAGUCACAUGCAGGGAGUGUGAAUGUCAGAGGUGGUUUAUUAUCCAGUCUGCCUUACCCUUAAUCUGUUCACAGAUAUUUAUUUACUAAUGCUUUUUUUUUCUUAAGAGUUAUGGGAUAGGAAAAUGAAGUGUUUGCUCUUCAUUUACUAAAUGAUUGUAAACUUGAGUUUUUCAUCAAAAUAAAAUUCCAUUGUUUUAAUGUUUCUGACCAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 586 712 730 735 802 1387 1435 1520 1948 2000 2219
Modification Positions m6A m6A m6A Y Y Y m6A Y m6A Y Y
Genomic Coordinates 11:13419646:- 11:13419520:- 11:13419502:- 11:13419497:- 11:13417231:- 11:13389060:- 11:13389012:- 11:13388927:- 11:13388499:- 11:13388447:- 11:13388228:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
KTLz8piFYdwC
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8