Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000322563
Gene ID: ENSG00000085741
Gene Name: WNT11
Sequence (UNICHARACTER ENCODING) GCAGGCGGCGUGCAGGACCAGCGGCGGCCGUGCAGGCGGAGGACUUCGGCGCGGCUCCUCCUGGGUGUGACCCCGGGCGCGCCCGCCGCGCGACGAUGAGGGCGCGGCCGCAGGUCUGCGAGGCGCUGCUCUUCGCCCUGGCGCUCCAGACCGGCGUGUGCUAUGGCAUCAAGUGGCUGGCGCUGUCCAAGACACCAUCGGCCCUGGCACUGAACCAGACGCAACACUGCAAGCAGCUGGAGGGUCUGGUGUCUGCACAGGUGCAGCUGUGCCGCAGCAACCUGGAGCUCAUGCACACGGUGGUGCACGCCGCCCGCGAGGUCAUGAAGGCCUGUCGCCGGGCCUUUGCCGACAUGCGCUGGAACUGCUCCUCCAUUGAGCUCGCCCCCAACUAUUUGCUUGACCUGGAGAGAGGGACCCGGGAGUCGGCCUUCGUGUAUGCGCUGUCGGCCGCCGCCAUCAGCCACGCCAUCGCCCGGGCCUGCACCUCCGGCGACCUGCCCGGCUGCUCCUGCGGCCCCGUCCCAGGUGAGCCACCCGGGCCCGGGAACCGCUGGGGAGGAUGUGCGGACAACCUCAGCUACGGGCUCCUCAUGGGGGCCAAGUUUUCCGAUGCUCCUAUGAAGGUGAAAAAAACAGGAUCCCAAGCCAAUAAACUGAUGCGUCUACACAACAGUGAAGUGGGGAGACAGGCUCUGCGCGCCUCUCUGGAAAUGAAGUGUAAGUGCCAUGGGGUGUCUGGCUCCUGCUCCAUCCGCACCUGCUGGAAGGGGCUGCAGGAGCUGCAGGAUGUGGCUGCUGACCUCAAGACCCGAUACCUGUCGGCCACCAAGGUAGUGCACCGACCCAUGGGCACCCGCAAGCACCUGGUGCCCAAGGACCUGGAUAUCCGGCCUGUGAAGGACUCGGAACUCGUCUAUCUGCAGAGCUCACCUGACUUCUGCAUGAAGAAUGAGAAGGUGGGCUCCCACGGGACACAAGACAGGCAGUGCAACAAGACAUCCAACGGAAGCGACAGCUGCGACCUUAUGUGCUGCGGGCGUGGCUACAACCCCUACACAGACCGCGUGGUCGAGCGGUGCCACUGUAAGUACCACUGGUGCUGCUACGUCACCUGCCGCAGGUGUGAGCGUACCGUGGAGCGCUAUGUCUGCAAGUGAGGCCCUGCCCUCCGCCCCACGCAGGAGCGAGGЖCUCUGCUCAAGGЖCCCUCAGCAACUGGGGCCAGGGGCCUGGAGACACUCCAUGGAGCUCUGCUUGUGAAUUCCAGAUGCCAGGCAUGGGAGGCGGCUUGUGCUUUGCCUUCACUUGGAAGCCACCAGGAACAGAAGGUCUGGCCACCCUGGAAGGAGGGCAGGACAUCAAAGGAAACCGACAAGAUUAAAAAUAЖCUUGGCAGCCUGAGGCUCUGGAGUGCCCACAGGCUGGUGUAAGGAGCGGGGCUUGGGAUCGGUGAGЖCUGAUACAGЖCUUGACCUUUCAGGGCCACAGAGЖCCAGCCUCCGGGAAGGGGUCUGCCCGCCUUCUUCAGAAUGUUCUGCGGGACCCCCUGGCCCACCCUGGGGUCUGAGCCUGCUGGGCCCACCACAUGGAAUCACUAGCUUGGGUUGUAAAUGUUUUCUUUUGUUUUUUGCUUUUUCUUCCUUUGGGAUGUGGAAGCUACAGAAAUAUUUAUAAAACAUAGCUUUUUCUUUGGGGUGGCACUUCUCAAUUCCUCUUUAUAUAUUUUAUAUAUAUAAAUAUAUAUGUAUAUAUAUAAUGAUCUCUAUUUUAAAACUAGCUUUUUAAGCAGCUGUAUGAAAUAAAUGCUGAGUGAGCCCCAGCCCGCCCCUGCAGUUCCCGGCCUCGUCAAGUGAACUCGGCAGACCCUGGGGCUGGCAGAGGGAGCUCUCCAGUUUCCAGGCAA
Sequence (SHORT NAMES ENCODING) GCAGGCGGCGUGCAGGACCAGCGGCGGCCGUGCAGGCGGAGGACUUCGGCGCGGCUCCUCCUGGGUGUGACCCCGGGCGCGCCCGCCGCGCGACGAUGAGGGCGCGGCCGCAGGUCUGCGAGGCGCUGCUCUUCGCCCUGGCGCUCCAGACCGGCGUGUGCUAUGGCAUCAAGUGGCUGGCGCUGUCCAAGACACCAUCGGCCCUGGCACUGAACCAGACGCAACACUGCAAGCAGCUGGAGGGUCUGGUGUCUGCACAGGUGCAGCUGUGCCGCAGCAACCUGGAGCUCAUGCACACGGUGGUGCACGCCGCCCGCGAGGUCAUGAAGGCCUGUCGCCGGGCCUUUGCCGACAUGCGCUGGAACUGCUCCUCCAUUGAGCUCGCCCCCAACUAUUUGCUUGACCUGGAGAGAGGGACCCGGGAGUCGGCCUUCGUGUAUGCGCUGUCGGCCGCCGCCAUCAGCCACGCCAUCGCCCGGGCCUGCACCUCCGGCGACCUGCCCGGCUGCUCCUGCGGCCCCGUCCCAGGUGAGCCACCCGGGCCCGGGAACCGCUGGGGAGGAUGUGCGGACAACCUCAGCUACGGGCUCCUCAUGGGGGCCAAGUUUUCCGAUGCUCCUAUGAAGGUGAAAAAAACAGGAUCCCAAGCCAAUAAACUGAUGCGUCUACACAACAGUGAAGUGGGGAGACAGGCUCUGCGCGCCUCUCUGGAAAUGAAGUGUAAGUGCCAUGGGGUGUCUGGCUCCUGCUCCAUCCGCACCUGCUGGAAGGGGCUGCAGGAGCUGCAGGAUGUGGCUGCUGACCUCAAGACCCGAUACCUGUCGGCCACCAAGGUAGUGCACCGACCCAUGGGCACCCGCAAGCACCUGGUGCCCAAGGACCUGGAUAUCCGGCCUGUGAAGGACUCGGAACUCGUCUAUCUGCAGAGCUCACCUGACUUCUGCAUGAAGAAUGAGAAGGUGGGCUCCCACGGGACACAAGACAGGCAGUGCAACAAGACAUCCAACGGAAGCGACAGCUGCGACCUUAUGUGCUGCGGGCGUGGCUACAACCCCUACACAGACCGCGUGGUCGAGCGGUGCCACUGUAAGUACCACUGGUGCUGCUACGUCACCUGCCGCAGGUGUGAGCGUACCGUGGAGCGCUAUGUCUGCAAGUGAGGCCCUGCCCUCCGCCCCACGCAGGAGCGAGGm6ACUCUGCUCAAGGm6ACCCUCAGCAACUGGGGCCAGGGGCCUGGAGACACUCCAUGGAGCUCUGCUUGUGAAUUCCAGAUGCCAGGCAUGGGAGGCGGCUUGUGCUUUGCCUUCACUUGGAAGCCACCAGGAACAGAAGGUCUGGCCACCCUGGAAGGAGGGCAGGACAUCAAAGGAAACCGACAAGAUUAAAAAUAm6ACUUGGCAGCCUGAGGCUCUGGAGUGCCCACAGGCUGGUGUAAGGAGCGGGGCUUGGGAUCGGUGAGm6ACUGAUACAGm6ACUUGACCUUUCAGGGCCACAGAGm6ACCAGCCUCCGGGAAGGGGUCUGCCCGCCUUCUUCAGAAUGUUCUGCGGGACCCCCUGGCCCACCCUGGGGUCUGAGCCUGCUGGGCCCACCACAUGGAAUCACUAGCUUGGGUUGUAAAUGUUUUCUUUUGUUUUUUGCUUUUUCUUCCUUUGGGAUGUGGAAGCUACAGAAAUAUUUAUAAAACAUAGCUUUUUCUUUGGGGUGGCACUUCUCAAUUCCUCUUUAUAUAUUUUAUAUAUAUAAAUAUAUAUGUAUAUAUAUAAUGAUCUCUAUUUUAAAACUAGCUUUUUAAGCAGCUGUAUGAAAUAAAUGCUGAGUGAGCCCCAGCCCGCCCCUGCAGUUCCCGGCCUCGUCAAGUGAACUCGGCAGACCCUGGGGCUGGCAGAGGGAGCUCUCCAGUUUCCAGGCAA
Sequence (MODOMICS CODE ENCODING) GCAGGCGGCGUGCAGGACCAGCGGCGGCCGUGCAGGCGGAGGACUUCGGCGCGGCUCCUCCUGGGUGUGACCCCGGGCGCGCCCGCCGCGCGACGAUGAGGGCGCGGCCGCAGGUCUGCGAGGCGCUGCUCUUCGCCCUGGCGCUCCAGACCGGCGUGUGCUAUGGCAUCAAGUGGCUGGCGCUGUCCAAGACACCAUCGGCCCUGGCACUGAACCAGACGCAACACUGCAAGCAGCUGGAGGGUCUGGUGUCUGCACAGGUGCAGCUGUGCCGCAGCAACCUGGAGCUCAUGCACACGGUGGUGCACGCCGCCCGCGAGGUCAUGAAGGCCUGUCGCCGGGCCUUUGCCGACAUGCGCUGGAACUGCUCCUCCAUUGAGCUCGCCCCCAACUAUUUGCUUGACCUGGAGAGAGGGACCCGGGAGUCGGCCUUCGUGUAUGCGCUGUCGGCCGCCGCCAUCAGCCACGCCAUCGCCCGGGCCUGCACCUCCGGCGACCUGCCCGGCUGCUCCUGCGGCCCCGUCCCAGGUGAGCCACCCGGGCCCGGGAACCGCUGGGGAGGAUGUGCGGACAACCUCAGCUACGGGCUCCUCAUGGGGGCCAAGUUUUCCGAUGCUCCUAUGAAGGUGAAAAAAACAGGAUCCCAAGCCAAUAAACUGAUGCGUCUACACAACAGUGAAGUGGGGAGACAGGCUCUGCGCGCCUCUCUGGAAAUGAAGUGUAAGUGCCAUGGGGUGUCUGGCUCCUGCUCCAUCCGCACCUGCUGGAAGGGGCUGCAGGAGCUGCAGGAUGUGGCUGCUGACCUCAAGACCCGAUACCUGUCGGCCACCAAGGUAGUGCACCGACCCAUGGGCACCCGCAAGCACCUGGUGCCCAAGGACCUGGAUAUCCGGCCUGUGAAGGACUCGGAACUCGUCUAUCUGCAGAGCUCACCUGACUUCUGCAUGAAGAAUGAGAAGGUGGGCUCCCACGGGACACAAGACAGGCAGUGCAACAAGACAUCCAACGGAAGCGACAGCUGCGACCUUAUGUGCUGCGGGCGUGGCUACAACCCCUACACAGACCGCGUGGUCGAGCGGUGCCACUGUAAGUACCACUGGUGCUGCUACGUCACCUGCCGCAGGUGUGAGCGUACCGUGGAGCGCUAUGUCUGCAAGUGAGGCCCUGCCCUCCGCCCCACGCAGGAGCGAGG2000000006ACUCUGCUCAAGG2000000006ACCCUCAGCAACUGGGGCCAGGGGCCUGGAGACACUCCAUGGAGCUCUGCUUGUGAAUUCCAGAUGCCAGGCAUGGGAGGCGGCUUGUGCUUUGCCUUCACUUGGAAGCCACCAGGAACAGAAGGUCUGGCCACCCUGGAAGGAGGGCAGGACAUCAAAGGAAACCGACAAGAUUAAAAAUA2000000006ACUUGGCAGCCUGAGGCUCUGGAGUGCCCACAGGCUGGUGUAAGGAGCGGGGCUUGGGAUCGGUGAG2000000006ACUGAUACAG2000000006ACUUGACCUUUCAGGGCCACAGAG2000000006ACCAGCCUCCGGGAAGGGGUCUGCCCGCCUUCUUCAGAAUGUUCUGCGGGACCCCCUGGCCCACCCUGGGGUCUGAGCCUGCUGGGCCCACCACAUGGAAUCACUAGCUUGGGUUGUAAAUGUUUUCUUUUGUUUUUUGCUUUUUCUUCCUUUGGGAUGUGGAAGCUACAGAAAUAUUUAUAAAACAUAGCUUUUUCUUUGGGGUGGCACUUCUCAAUUCCUCUUUAUAUAUUUUAUAUAUAUAAAUAUAUAUGUAUAUAUAUAAUGAUCUCUAUUUUAAAACUAGCUUUUUAAGCAGCUGUAUGAAAUAAAUGCUGAGUGAGCCCCAGCCCGCCCCUGCAGUUCCCGGCCUCGUCAAGUGAACUCGGCAGACCCUGGGGCUGGCAGAGGGAGCUCUCCAGUUUCCAGGCAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1193 1206 1388 1455 1465 1489
Modification Positions m6A m6A m6A m6A m6A m6A
Genomic Coordinates 11:76187032:- 11:76187019:- 11:76186837:- 11:76186770:- 11:76186760:- 11:76186736:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
aHkqKEJkRYyb
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac