General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000425428
Gene ID:	ENSG00000026508
Gene Name:	CD44
Sequence (UNICHARACTER ENCODING)	GCGGACCCCAGCCUCUGCCAGGUUCGGUCCGCCAPCCUCGUCCCGUCCPCCGCCGGCCCCUGCCCCGCGCCCAGGGAUCCUCCAGCUCCUUUCGCCCGCGCCCUCCGUUCGCUCCGGACACCAUGGACAAGUUUUGGUGGCACGCAGCCUGGGGACUCUGCCUCGUGCCGCUGAGCCUGGCGCAGAUCGAUUUGAAUAUAACCUGCCGCUUUGCAGGUGUAUUCCACGUGGAGAAAAAUGGUCGCUACAGCAUCUCUCGGACGGAGGCCGCUGACCUCUGCAAGGCUUUCAAUAGCACCUUGCCCACAAUGGCCCAGAUGGAGAAAGCUCUGAGCAUCGGAUUUGAGACCUGCAGCUCCACCUGAAGAAGAUUGUACAUCAGUCACAGACCUGCCCAAUGCCUUUGAUGGACCAAUUACCAUAACUAUUGUUAACCGUGAUGGCACCCGCUAUGUCCAGAAAGGAGAAUACЖGAACGAAUCCUGAAGACAUCUACCCCAGCAACCCUACUGAUGAUGACGUGAGCAGCGGCUCCPCCAGUGAAAGGAGCAGCACUUCAGGAGGUUACAUCUUUUACACCUUUUCUACUGUACACCCCAUCCCAGACGAAGЖCAGUCCCUGGAUCACCGACAGCACAGЖCAGAAUCCCUGCUACCAGAGACCAAGЖCACAUUCCACCCCAGUGGGGGGUCCCAUACCACUCAUGGAUCUGAAUCAGAUGGACACUCACAUGGGAGUCAAGAAGGUGGAGCAAACACAACCUCUGGUCCUAUAAGGACACCCCAAAUUCCAGAAUGGCUGAUCAUCUUGGCAUCCCUCUUGGCCUUGGCUUUGAUUCUUGCAGUUUGCAUUGCAGUCAACAGUCGAAGAAGGUGUGGGCAGAAGAAAAAGCUAGUGAUCAACAGUGGCAAUGGAGCUGUGGAGGACAGAAAGCCAAGUGGACUCAACGGAGAGGCCAGCAAGUCUCAGGAAAUGGUGCAUUUGGUGAACAAGGAGUCGUCAGAAACUCCAGACCAGUUUAUGACAGCUGAUGAGACAAGGAACCUGCAGAAUGUGGЖCAUGAAGAUUGGGGUGUAЖCACCUACACCAUUAUCUUGGAAAGAAACAACCGUUGGAAACAPAACCAUUACAGGGAGCUGGGЖCACUUAЖCAGAUGCAAUGUGCUACUGAUUGUUUCAUUGCGAAUCUUUUUUAGCAUAAAAUUUUCUACUCUUUUUGUUUUUUGUGUUUUGUUCUPUAAAGUCAGGUCCAAUUUGUAAAAACAGCAUUGCUUUCUGAAAUUAGGGCCCAAUUAAUAAUCAGCAAGAAUUUGAUCGUUCCAGUUCCCACUUGGAGGCCUUUCAPCCCUCGGGUGUGCUAUGGAUGGCUUCUAACAAAAACUACACAUAUGUAUUCCUGAUCGCCAACCUUUCCCCCACCAGCUAAGGЖCAUUUCCCAGGGUUAAUAGGGCCUGGUCCCUGGGAGGAAAUUUGAAUGGGUCCAUUUUGCCCUUCCAUAGCCUAAUCCCUGGGCAUUGCUUUCCACUGAGGUUGGGGGUUGGGGUGUACUAGUUACACAUCUUCAACAGACCCCCUCUAGAAAUUUUUCAGAUGCUUCUGGGAGACACCCAAAGGGUGAAGCUAUUUAUCUGUAGUAAACUAUUUAUCUGUGUUUUUGAAAUAUUAAACCCUGGAUCAGUCCUUUGAUCAGUAUAAUUUUUUAAAGUUACUUUGUCAGAGGCACAAAAGGGUUUAAACUGAUUCAUAAUAAAUAUCUGUACUUCUUCGAUCUUCA
Sequence (SHORT NAMES ENCODING)	GCGGACCCCAGCCUCUGCCAGGUUCGGUCCGCCAYCCUCGUCCCGUCCYCCGCCGGCCCCUGCCCCGCGCCCAGGGAUCCUCCAGCUCCUUUCGCCCGCGCCCUCCGUUCGCUCCGGACACCAUGGACAAGUUUUGGUGGCACGCAGCCUGGGGACUCUGCCUCGUGCCGCUGAGCCUGGCGCAGAUCGAUUUGAAUAUAACCUGCCGCUUUGCAGGUGUAUUCCACGUGGAGAAAAAUGGUCGCUACAGCAUCUCUCGGACGGAGGCCGCUGACCUCUGCAAGGCUUUCAAUAGCACCUUGCCCACAAUGGCCCAGAUGGAGAAAGCUCUGAGCAUCGGAUUUGAGACCUGCAGCUCCACCUGAAGAAGAUUGUACAUCAGUCACAGACCUGCCCAAUGCCUUUGAUGGACCAAUUACCAUAACUAUUGUUAACCGUGAUGGCACCCGCUAUGUCCAGAAAGGAGAAUACm6AGAACGAAUCCUGAAGACAUCUACCCCAGCAACCCUACUGAUGAUGACGUGAGCAGCGGCUCCYCCAGUGAAAGGAGCAGCACUUCAGGAGGUUACAUCUUUUACACCUUUUCUACUGUACACCCCAUCCCAGACGAAGm6ACAGUCCCUGGAUCACCGACAGCACAGm6ACAGAAUCCCUGCUACCAGAGACCAAGm6ACACAUUCCACCCCAGUGGGGGGUCCCAUACCACUCAUGGAUCUGAAUCAGAUGGACACUCACAUGGGAGUCAAGAAGGUGGAGCAAACACAACCUCUGGUCCUAUAAGGACACCCCAAAUUCCAGAAUGGCUGAUCAUCUUGGCAUCCCUCUUGGCCUUGGCUUUGAUUCUUGCAGUUUGCAUUGCAGUCAACAGUCGAAGAAGGUGUGGGCAGAAGAAAAAGCUAGUGAUCAACAGUGGCAAUGGAGCUGUGGAGGACAGAAAGCCAAGUGGACUCAACGGAGAGGCCAGCAAGUCUCAGGAAAUGGUGCAUUUGGUGAACAAGGAGUCGUCAGAAACUCCAGACCAGUUUAUGACAGCUGAUGAGACAAGGAACCUGCAGAAUGUGGm6ACAUGAAGAUUGGGGUGUAm6ACACCUACACCAUUAUCUUGGAAAGAAACAACCGUUGGAAACAYAACCAUUACAGGGAGCUGGGm6ACACUUAm6ACAGAUGCAAUGUGCUACUGAUUGUUUCAUUGCGAAUCUUUUUUAGCAUAAAAUUUUCUACUCUUUUUGUUUUUUGUGUUUUGUUCUYUAAAGUCAGGUCCAAUUUGUAAAAACAGCAUUGCUUUCUGAAAUUAGGGCCCAAUUAAUAAUCAGCAAGAAUUUGAUCGUUCCAGUUCCCACUUGGAGGCCUUUCAYCCCUCGGGUGUGCUAUGGAUGGCUUCUAACAAAAACUACACAUAUGUAUUCCUGAUCGCCAACCUUUCCCCCACCAGCUAAGGm6ACAUUUCCCAGGGUUAAUAGGGCCUGGUCCCUGGGAGGAAAUUUGAAUGGGUCCAUUUUGCCCUUCCAUAGCCUAAUCCCUGGGCAUUGCUUUCCACUGAGGUUGGGGGUUGGGGUGUACUAGUUACACAUCUUCAACAGACCCCCUCUAGAAAUUUUUCAGAUGCUUCUGGGAGACACCCAAAGGGUGAAGCUAUUUAUCUGUAGUAAACUAUUUAUCUGUGUUUUUGAAAUAUUAAACCCUGGAUCAGUCCUUUGAUCAGUAUAAUUUUUUAAAGUUACUUUGUCAGAGGCACAAAAGGGUUUAAACUGAUUCAUAAUAAAUAUCUGUACUUCUUCGAUCUUCA
Sequence (MODOMICS CODE ENCODING)	GCGGACCCCAGCCUCUGCCAGGUUCGGUCCGCCA2000000009UCCUCGUCCCGUCC2000000009UCCGCCGGCCCCUGCCCCGCGCCCAGGGAUCCUCCAGCUCCUUUCGCCCGCGCCCUCCGUUCGCUCCGGACACCAUGGACAAGUUUUGGUGGCACGCAGCCUGGGGACUCUGCCUCGUGCCGCUGAGCCUGGCGCAGAUCGAUUUGAAUAUAACCUGCCGCUUUGCAGGUGUAUUCCACGUGGAGAAAAAUGGUCGCUACAGCAUCUCUCGGACGGAGGCCGCUGACCUCUGCAAGGCUUUCAAUAGCACCUUGCCCACAAUGGCCCAGAUGGAGAAAGCUCUGAGCAUCGGAUUUGAGACCUGCAGCUCCACCUGAAGAAGAUUGUACAUCAGUCACAGACCUGCCCAAUGCCUUUGAUGGACCAAUUACCAUAACUAUUGUUAACCGUGAUGGCACCCGCUAUGUCCAGAAAGGAGAAUAC2000000006AGAACGAAUCCUGAAGACAUCUACCCCAGCAACCCUACUGAUGAUGACGUGAGCAGCGGCUCC2000000009UCCAGUGAAAGGAGCAGCACUUCAGGAGGUUACAUCUUUUACACCUUUUCUACUGUACACCCCAUCCCAGACGAAG2000000006ACAGUCCCUGGAUCACCGACAGCACAG2000000006ACAGAAUCCCUGCUACCAGAGACCAAG2000000006ACACAUUCCACCCCAGUGGGGGGUCCCAUACCACUCAUGGAUCUGAAUCAGAUGGACACUCACAUGGGAGUCAAGAAGGUGGAGCAAACACAACCUCUGGUCCUAUAAGGACACCCCAAAUUCCAGAAUGGCUGAUCAUCUUGGCAUCCCUCUUGGCCUUGGCUUUGAUUCUUGCAGUUUGCAUUGCAGUCAACAGUCGAAGAAGGUGUGGGCAGAAGAAAAAGCUAGUGAUCAACAGUGGCAAUGGAGCUGUGGAGGACAGAAAGCCAAGUGGACUCAACGGAGAGGCCAGCAAGUCUCAGGAAAUGGUGCAUUUGGUGAACAAGGAGUCGUCAGAAACUCCAGACCAGUUUAUGACAGCUGAUGAGACAAGGAACCUGCAGAAUGUGG2000000006ACAUGAAGAUUGGGGUGUA2000000006ACACCUACACCAUUAUCUUGGAAAGAAACAACCGUUGGAAACA2000000009UAACCAUUACAGGGAGCUGGG2000000006ACACUUA2000000006ACAGAUGCAAUGUGCUACUGAUUGUUUCAUUGCGAAUCUUUUUUAGCAUAAAAUUUUCUACUCUUUUUGUUUUUUGUGUUUUGUUCU2000000009UUAAAGUCAGGUCCAAUUUGUAAAAACAGCAUUGCUUUCUGAAAUUAGGGCCCAAUUAAUAAUCAGCAAGAAUUUGAUCGUUCCAGUUCCCACUUGGAGGCCUUUCA2000000009UCCCUCGGGUGUGCUAUGGAUGGCUUCUAACAAAAACUACACAUAUGUAUUCCUGAUCGCCAACCUUUCCCCCACCAGCUAAGG2000000006ACAUUUCCCAGGGUUAAUAGGGCCUGGUCCCUGGGAGGAAAUUUGAAUGGGUCCAUUUUGCCCUUCCAUAGCCUAAUCCCUGGGCAUUGCUUUCCACUGAGGUUGGGGGUUGGGGUGUACUAGUUACACAUCUUCAACAGACCCCCUCUAGAAAUUUUUCAGAUGCUUCUGGGAGACACCCAAAGGGUGAAGCUAUUUAUCUGUAGUAAACUAUUUAUCUGUGUUUUUGAAAUAUUAAACCCUGGAUCAGUCCUUUGAUCAGUAUAAUUUUUUAAAGUUACUUUGUCAGAGGCACAAAAGGGUUUAAACUGAUUCAUAAUAAAUAUCUGUACUUCUUCGAUCUUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	35	49	472	535	611	638	665	1055	1074	1117	1138	1145	1232	1339	1423
Modification Positions	Y	Y	m6A	Y	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y	Y	m6A
Genomic Coordinates	11:35139216:+	11:35139230:+	11:35189882:+	11:35189945:+	11:35190021:+	11:35190048:+	11:35214861:+	11:35229314:+	11:35229333:+	11:35229376:+	11:35229397:+	11:35229404:+	11:35229491:+	11:35229598:+	11:35229682:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac	8cMbzB4aD5Se 93arJtwJmuS9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac	8cMbzB4aD5Se KTLz8piFYdwC WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac	ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	ArijeGVTwYBw BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac