General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000533064
Gene ID:	ENSG00000110171
Gene Name:	TRIM3
Sequence (UNICHARACTER ENCODING)	GCUAGAAGCUGGAGAUACAGUGAUGCACAAAGCAAAUGUAUUCUGUGUCUUCUUGAUUAUAGUCUAGUAGGGAAGAGAAAAAGGUAACCAAAAAAUUACAAUAUGAUGUAAUAGAUUCUGUGAUAGGAAGGUGCAGGGAACUGUGGGAAGGGAUACAGAAGUGUAUGAUUCAGGAAAGACUAUAUGAGGAGGACCUCAAGCACAAGUGGGAAUUAAAUGGAAGGCAGAGGAGGACGAGAGUGUUUGAGACAAAAGACACAGGAAGAGCCAAGAAUGCAAGGUGGGAACCUUAAUAGUGUGUUCGAGAAAUCACAAGUAGUUCAGACUCAGCUUGAGGAGGGGACCGUGAAAGCUGAGAGUGAGGCUUGUGUGCCCCCUUAAGGGGCUUGCUCUCCUCCCAAGAGCUAUGGGGAGUCACAGGAUUGCAGGCAGGGGAGUGAUGCAGUCCUGUGUGUCUUAGAUCACUCAGGCUGAGGCAAGACUGAGACAGGAAGAUCAAUCUUUUGCAGUGAUCCAGAUGAGAAAUGAUGUGAGCCUGGACCGUGAGAAAGACGAGACAGUGUAUGCAUAGGGUAUAGACUUGAGAGAGGGAUUUGAGAUGGAAUCAAGAGUUGUGUUAAUUCAUUGGCCUAUCAAACAGAGAAGAAAUUGGAGUCAAGAGUGACUCAUGGCCAGCUGGGUGGCACCAGUCAUUGAGAUAGAGAACUAAGAGAACUGAUUUCCCAAAGAAAAUGAGCUGUUAGAUUUGAUAUUCCCAAUGGACAUCAGCAAGAGAUGUCUACUAGGCAGUAGGGCACAUGGAUGUGAAGCCUAUGAAGCAGAUUUGGGCUGUAGCUGUAGAUCUGGGUGGGGGUUCUCAGCCCUGGGGCUUCACCCUAUCCUCCUCCAAAGCCCUACCCUCUGCCUGAGGCCAGGUCCCCAGUCCCUAGCCCCUUCCCCCGCCAGGUGUACAGUGCCGAUGGAGAGUUCCUCUUCAAGUUUGGCUCCCAUGGCGAGGGCAAUGGGCAGUUCAAUGCCCCCACAGGAGUAGCUGUGGACUCCAAUGGAAACAUCAUUGUGGCUGACUGGGGCAACAGCCGCAUCCAGGUAUUCGACAGCUCUGGCUCCUUCCUGUCCUAUAUCAACACAUCUGCAGAЖCCACUGUAUGGUCCACAGGGCCUGGCACUGACCUCGGAUGGCCAUGUGGUGGUGGCUGAUGCUGGCAACCACUGCUPUAAAGCCUAUCGCUACCUCCAGUAGCUGUACAGAGGCCCUGCCUGGCUUGUGGAGGGЖCAGЖCAUUGGGGUGAUUGGЖCAAGAGGGUCUGGCUGGGAGGUGGGCCAGACCUGGCAGCACUGAAUGUGGGCUGUGGGCAUGGGUGCACCCGGUGCCCUCCCUCUCCUACCCCCACCCCCACGGUUGCACUPUAUUUAUUCGGUUCUUGCUUUGGUGACUGGGUGAGCCUGGЖCUGUGGUCCCAAGGAUGUGUGCAGAGCUUCACCCUACCCUUCUUACACACCUCCCCACCCCUGUCAGUCUGCUCCCCAUCCCCCAGCCUGGGGCCAGAЖCAGCCUACCCCAGGACAGGAGUCCCUCUAGUUGUCUCCCUACCACCCUAUACACACUGACAGAGACAGCAAUACCCCACCCCCCAUAUUAAAUAAAUGUCUUCACCAAGA
Sequence (SHORT NAMES ENCODING)	GCUAGAAGCUGGAGAUACAGUGAUGCACAAAGCAAAUGUAUUCUGUGUCUUCUUGAUUAUAGUCUAGUAGGGAAGAGAAAAAGGUAACCAAAAAAUUACAAUAUGAUGUAAUAGAUUCUGUGAUAGGAAGGUGCAGGGAACUGUGGGAAGGGAUACAGAAGUGUAUGAUUCAGGAAAGACUAUAUGAGGAGGACCUCAAGCACAAGUGGGAAUUAAAUGGAAGGCAGAGGAGGACGAGAGUGUUUGAGACAAAAGACACAGGAAGAGCCAAGAAUGCAAGGUGGGAACCUUAAUAGUGUGUUCGAGAAAUCACAAGUAGUUCAGACUCAGCUUGAGGAGGGGACCGUGAAAGCUGAGAGUGAGGCUUGUGUGCCCCCUUAAGGGGCUUGCUCUCCUCCCAAGAGCUAUGGGGAGUCACAGGAUUGCAGGCAGGGGAGUGAUGCAGUCCUGUGUGUCUUAGAUCACUCAGGCUGAGGCAAGACUGAGACAGGAAGAUCAAUCUUUUGCAGUGAUCCAGAUGAGAAAUGAUGUGAGCCUGGACCGUGAGAAAGACGAGACAGUGUAUGCAUAGGGUAUAGACUUGAGAGAGGGAUUUGAGAUGGAAUCAAGAGUUGUGUUAAUUCAUUGGCCUAUCAAACAGAGAAGAAAUUGGAGUCAAGAGUGACUCAUGGCCAGCUGGGUGGCACCAGUCAUUGAGAUAGAGAACUAAGAGAACUGAUUUCCCAAAGAAAAUGAGCUGUUAGAUUUGAUAUUCCCAAUGGACAUCAGCAAGAGAUGUCUACUAGGCAGUAGGGCACAUGGAUGUGAAGCCUAUGAAGCAGAUUUGGGCUGUAGCUGUAGAUCUGGGUGGGGGUUCUCAGCCCUGGGGCUUCACCCUAUCCUCCUCCAAAGCCCUACCCUCUGCCUGAGGCCAGGUCCCCAGUCCCUAGCCCCUUCCCCCGCCAGGUGUACAGUGCCGAUGGAGAGUUCCUCUUCAAGUUUGGCUCCCAUGGCGAGGGCAAUGGGCAGUUCAAUGCCCCCACAGGAGUAGCUGUGGACUCCAAUGGAAACAUCAUUGUGGCUGACUGGGGCAACAGCCGCAUCCAGGUAUUCGACAGCUCUGGCUCCUUCCUGUCCUAUAUCAACACAUCUGCAGAm6ACCACUGUAUGGUCCACAGGGCCUGGCACUGACCUCGGAUGGCCAUGUGGUGGUGGCUGAUGCUGGCAACCACUGCUYUAAAGCCUAUCGCUACCUCCAGUAGCUGUACAGAGGCCCUGCCUGGCUUGUGGAGGGm6ACAGm6ACAUUGGGGUGAUUGGm6ACAAGAGGGUCUGGCUGGGAGGUGGGCCAGACCUGGCAGCACUGAAUGUGGGCUGUGGGCAUGGGUGCACCCGGUGCCCUCCCUCUCCUACCCCCACCCCCACGGUUGCACUYUAUUUAUUCGGUUCUUGCUUUGGUGACUGGGUGAGCCUGGm6ACUGUGGUCCCAAGGAUGUGUGCAGAGCUUCACCCUACCCUUCUUACACACCUCCCCACCCCUGUCAGUCUGCUCCCCAUCCCCCAGCCUGGGGCCAGAm6ACAGCCUACCCCAGGACAGGAGUCCCUCUAGUUGUCUCCCUACCACCCUAUACACACUGACAGAGACAGCAAUACCCCACCCCCCAUAUUAAAUAAAUGUCUUCACCAAGA
Sequence (MODOMICS CODE ENCODING)	GCUAGAAGCUGGAGAUACAGUGAUGCACAAAGCAAAUGUAUUCUGUGUCUUCUUGAUUAUAGUCUAGUAGGGAAGAGAAAAAGGUAACCAAAAAAUUACAAUAUGAUGUAAUAGAUUCUGUGAUAGGAAGGUGCAGGGAACUGUGGGAAGGGAUACAGAAGUGUAUGAUUCAGGAAAGACUAUAUGAGGAGGACCUCAAGCACAAGUGGGAAUUAAAUGGAAGGCAGAGGAGGACGAGAGUGUUUGAGACAAAAGACACAGGAAGAGCCAAGAAUGCAAGGUGGGAACCUUAAUAGUGUGUUCGAGAAAUCACAAGUAGUUCAGACUCAGCUUGAGGAGGGGACCGUGAAAGCUGAGAGUGAGGCUUGUGUGCCCCCUUAAGGGGCUUGCUCUCCUCCCAAGAGCUAUGGGGAGUCACAGGAUUGCAGGCAGGGGAGUGAUGCAGUCCUGUGUGUCUUAGAUCACUCAGGCUGAGGCAAGACUGAGACAGGAAGAUCAAUCUUUUGCAGUGAUCCAGAUGAGAAAUGAUGUGAGCCUGGACCGUGAGAAAGACGAGACAGUGUAUGCAUAGGGUAUAGACUUGAGAGAGGGAUUUGAGAUGGAAUCAAGAGUUGUGUUAAUUCAUUGGCCUAUCAAACAGAGAAGAAAUUGGAGUCAAGAGUGACUCAUGGCCAGCUGGGUGGCACCAGUCAUUGAGAUAGAGAACUAAGAGAACUGAUUUCCCAAAGAAAAUGAGCUGUUAGAUUUGAUAUUCCCAAUGGACAUCAGCAAGAGAUGUCUACUAGGCAGUAGGGCACAUGGAUGUGAAGCCUAUGAAGCAGAUUUGGGCUGUAGCUGUAGAUCUGGGUGGGGGUUCUCAGCCCUGGGGCUUCACCCUAUCCUCCUCCAAAGCCCUACCCUCUGCCUGAGGCCAGGUCCCCAGUCCCUAGCCCCUUCCCCCGCCAGGUGUACAGUGCCGAUGGAGAGUUCCUCUUCAAGUUUGGCUCCCAUGGCGAGGGCAAUGGGCAGUUCAAUGCCCCCACAGGAGUAGCUGUGGACUCCAAUGGAAACAUCAUUGUGGCUGACUGGGGCAACAGCCGCAUCCAGGUAUUCGACAGCUCUGGCUCCUUCCUGUCCUAUAUCAACACAUCUGCAGA2000000006ACCACUGUAUGGUCCACAGGGCCUGGCACUGACCUCGGAUGGCCAUGUGGUGGUGGCUGAUGCUGGCAACCACUGCU2000000009UUAAAGCCUAUCGCUACCUCCAGUAGCUGUACAGAGGCCCUGCCUGGCUUGUGGAGGG2000000006ACAG2000000006ACAUUGGGGUGAUUGG2000000006ACAAGAGGGUCUGGCUGGGAGGUGGGCCAGACCUGGCAGCACUGAAUGUGGGCUGUGGGCAUGGGUGCACCCGGUGCCCUCCCUCUCCUACCCCCACCCCCACGGUUGCACU2000000009UUAUUUAUUCGGUUCUUGCUUUGGUGACUGGGUGAGCCUGG2000000006ACUGUGGUCCCAAGGAUGUGUGCAGAGCUUCACCCUACCCUUCUUACACACCUCCCCACCCCUGUCAGUCUGCUCCCCAUCCCCCAGCCUGGGGCCAGA2000000006ACAGCCUACCCCAGGACAGGAGUCCCUCUAGUUGUCUCCCUACCACCCUAUACACACUGACAGAGACAGCAAUACCCCACCCCCCAUAUUAAAUAAAUGUCUUCACCAAGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1137	1214	1272	1276	1292	1404	1445	1544
Modification Positions	m6A	Y	m6A	m6A	m6A	Y	m6A	m6A
Genomic Coordinates	11:6449130:-	11:6449053:-	11:6448995:-	11:6448991:-	11:6448975:-	11:6448863:-	11:6448822:-	11:6448723:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	dknfVe6BK8aP Yfn77uLS5tv8	dknfVe6BK8aP Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dknfVe6BK8aP Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 dknfVe6BK8aP Yfn77uLS5tv8	6AyXsheySjfx msuJfBpJvM5H VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U dknfVe6BK8aP Yfn77uLS5tv8	dknfVe6BK8aP Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dknfVe6BK8aP Yfn77uLS5tv8	dknfVe6BK8aP Yfn77uLS5tv8