General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000546088
Gene ID:	ENSG00000166012
Gene Name:	TAF1D
Sequence (UNICHARACTER ENCODING)	GGCCUGAAAAUGUGACAGGAUCAUGAAUGUCAAAGGUGAAGCAUAUAGAAAAAACGACUUCAUAGAAAUGAAUAAAGAUAAAUGUGGAUAUAUGUACCAGUCUGGUGGUGAAGAAAUUCUGAAACCCAGAЖCUPUAUAЖCAAGAAAAAAAAUUUUUAACCCUGUGAAGAAGUUUGUGAAAGAAACUUGUGAAGUAGUAAUAAUUAGAAAAAAAACCAUUAAAACACCAGAGAAAAUACAUAGAAAAAUUUGAGAAAUUGUCAUUUGAUUUCUGAAUAAGAGCUUACAGGUGUCCUGUGAGUAUUGAAACAAUGAAAUGUAGUGAUUUUAAUUUUGAAAAGAAAAUCUUAAAGUAACUUGACACCCAACCAUCUUGAAGAGGGGAUUUGAAAUGCUGUAAUUUUAUCCCAGCUUUGUUCAGCCAUGACAAGUGACCUGUCAGAUGCUUAGUAUUGUAAUAACCUCAUUUCCCUUUCCAAAUUUAGAGUAUCUUUAAUACUAUUUUUUUUAGACAGAGUCUCGAUCUGUCACCCAGGCUGUAGUGCAAUGGCCGCAGUCUUGGCUUACUGCAACCUCCAUCUCCCGGGUUCAAGCGAUUCUGCCUCAGCCUCCUUAGUAGCUGGGAUUACAGGCGUUAGCCAGCACACCCAGCUAGUUUUUGUUUUUUUAGUAGAGACAGGCUUUCACCAUGGUCUCGAACUCCUGACCUCAGGCGAUCCGCCUGCCUUGGCCUCCCAAAAUGCUGGGAUUAUAGGUGUGAGCCAUGGCACCUGGCCUAAUACUACUUUUAACUACCAUUUUCACUUUUUAUUAGUUCAAGAAAAGGCAUACACAUUUAUUCAACAUGUAUACCUGGGGAGAACCAGUCAUUACCCCGAUGUUCAUUAUUUUGAUCACCACGAUAGAGCUGACUACUCUGCUAUGUAGUGCAUUUUGGGACUGCACUUAUGUAUGUUUUUGUUUAACGUGGACAAAGACUUACAGAUAGGUGCAAAAAAUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUAUAAGAAGGGAUAUUAUGAUACCUGAGACAGUUGAUUGAUGGGAGUAUUGAUAGCCAPAAAGGUUGGUUCCAGGCCAGGUGCAAUGGGUCAAGCCUGCAAUCCCCACACCAAGGUGGGAGUAUUGCUUGAAACCAGGAGUUCAAGACCAGCCUAGGCAAGAAAGCUUUUAUCUUGAGAACAUGGUGUCUGGAGUUAAAGAUAAUCUACUUUUUUACCUUAGGUAUUGGCAUACUCCACACAUCUGUACCAUUCUUGAGUGAUCGCUUAGGAAUGAAUGUGAUUUGAACUCAUUCAUGUUGAGAGGGUGUCAAAUUGAGAACCAGGUAGAUCCCCACCACCUACAGUAAAAAGGACCCUAAAGUAAAUUGGUUGAAGAAAUUAGAUCCCAAAGAUUCUUGGUGAAUUUUGAAGUCUUCAUCAGUAUAUCCAUAUUAAAACGAGAUGACAGAAGCCAAAGUAAUUAUGGGCUGACAGGACAACUGGAUCAGUUUCAUUAAAAAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUPUAGAGGAUCUAAAGUGACCUUGAUGGACAGUGGAAGAAAUCACAACAUGGAAUUCCUCGAAUAACAAUUUAUUGACUPUAAAUAAUUUUGUCUAAUGCUACAUAUACACAAUUAAAAAACCUUUACACUAUUUCUAGAA
Sequence (SHORT NAMES ENCODING)	GGCCUGAAAAUGUGACAGGAUCAUGAAUGUCAAAGGUGAAGCAUAUAGAAAAAACGACUUCAUAGAAAUGAAUAAAGAUAAAUGUGGAUAUAUGUACCAGUCUGGUGGUGAAGAAAUUCUGAAACCCAGAm6ACUYUAUAm6ACAAGAAAAAAAAUUUUUAACCCUGUGAAGAAGUUUGUGAAAGAAACUUGUGAAGUAGUAAUAAUUAGAAAAAAAACCAUUAAAACACCAGAGAAAAUACAUAGAAAAAUUUGAGAAAUUGUCAUUUGAUUUCUGAAUAAGAGCUUACAGGUGUCCUGUGAGUAUUGAAACAAUGAAAUGUAGUGAUUUUAAUUUUGAAAAGAAAAUCUUAAAGUAACUUGACACCCAACCAUCUUGAAGAGGGGAUUUGAAAUGCUGUAAUUUUAUCCCAGCUUUGUUCAGCCAUGACAAGUGACCUGUCAGAUGCUUAGUAUUGUAAUAACCUCAUUUCCCUUUCCAAAUUUAGAGUAUCUUUAAUACUAUUUUUUUUAGACAGAGUCUCGAUCUGUCACCCAGGCUGUAGUGCAAUGGCCGCAGUCUUGGCUUACUGCAACCUCCAUCUCCCGGGUUCAAGCGAUUCUGCCUCAGCCUCCUUAGUAGCUGGGAUUACAGGCGUUAGCCAGCACACCCAGCUAGUUUUUGUUUUUUUAGUAGAGACAGGCUUUCACCAUGGUCUCGAACUCCUGACCUCAGGCGAUCCGCCUGCCUUGGCCUCCCAAAAUGCUGGGAUUAUAGGUGUGAGCCAUGGCACCUGGCCUAAUACUACUUUUAACUACCAUUUUCACUUUUUAUUAGUUCAAGAAAAGGCAUACACAUUUAUUCAACAUGUAUACCUGGGGAGAACCAGUCAUUACCCCGAUGUUCAUUAUUUUGAUCACCACGAUAGAGCUGACUACUCUGCUAUGUAGUGCAUUUUGGGACUGCACUUAUGUAUGUUUUUGUUUAACGUGGACAAAGACUUACAGAUAGGUGCAAAAAAUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUAUAAGAAGGGAUAUUAUGAUACCUGAGACAGUUGAUUGAUGGGAGUAUUGAUAGCCAYAAAGGUUGGUUCCAGGCCAGGUGCAAUGGGUCAAGCCUGCAAUCCCCACACCAAGGUGGGAGUAUUGCUUGAAACCAGGAGUUCAAGACCAGCCUAGGCAAGAAAGCUUUUAUCUUGAGAACAUGGUGUCUGGAGUUAAAGAUAAUCUACUUUUUUACCUUAGGUAUUGGCAUACUCCACACAUCUGUACCAUUCUUGAGUGAUCGCUUAGGAAUGAAUGUGAUUUGAACUCAUUCAUGUUGAGAGGGUGUCAAAUUGAGAACCAGGUAGAUCCCCACCACCUACAGUAAAAAGGACCCUAAAGUAAAUUGGUUGAAGAAAUUAGAUCCCAAAGAUUCUUGGUGAAUUUUGAAGUCUUCAUCAGUAUAUCCAUAUUAAAACGAGAUGACAGAAGCCAAAGUAAUUAUGGGCUGACAGGACAACUGGAUCAGUUUCAUUAAAAAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUYUAGAGGAUCUAAAGUGACCUUGAUGGACAGUGGAAGAAAUCACAACAUGGAAUUCCUCGAAUAACAAUUUAUUGACUYUAAAUAAUUUUGUCUAAUGCUACAUAUACACAAUUAAAAAACCUUUACACUAUUUCUAGAA
Sequence (MODOMICS CODE ENCODING)	GGCCUGAAAAUGUGACAGGAUCAUGAAUGUCAAAGGUGAAGCAUAUAGAAAAAACGACUUCAUAGAAAUGAAUAAAGAUAAAUGUGGAUAUAUGUACCAGUCUGGUGGUGAAGAAAUUCUGAAACCCAGA2000000006ACU2000000009UUAUA2000000006ACAAGAAAAAAAAUUUUUAACCCUGUGAAGAAGUUUGUGAAAGAAACUUGUGAAGUAGUAAUAAUUAGAAAAAAAACCAUUAAAACACCAGAGAAAAUACAUAGAAAAAUUUGAGAAAUUGUCAUUUGAUUUCUGAAUAAGAGCUUACAGGUGUCCUGUGAGUAUUGAAACAAUGAAAUGUAGUGAUUUUAAUUUUGAAAAGAAAAUCUUAAAGUAACUUGACACCCAACCAUCUUGAAGAGGGGAUUUGAAAUGCUGUAAUUUUAUCCCAGCUUUGUUCAGCCAUGACAAGUGACCUGUCAGAUGCUUAGUAUUGUAAUAACCUCAUUUCCCUUUCCAAAUUUAGAGUAUCUUUAAUACUAUUUUUUUUAGACAGAGUCUCGAUCUGUCACCCAGGCUGUAGUGCAAUGGCCGCAGUCUUGGCUUACUGCAACCUCCAUCUCCCGGGUUCAAGCGAUUCUGCCUCAGCCUCCUUAGUAGCUGGGAUUACAGGCGUUAGCCAGCACACCCAGCUAGUUUUUGUUUUUUUAGUAGAGACAGGCUUUCACCAUGGUCUCGAACUCCUGACCUCAGGCGAUCCGCCUGCCUUGGCCUCCCAAAAUGCUGGGAUUAUAGGUGUGAGCCAUGGCACCUGGCCUAAUACUACUUUUAACUACCAUUUUCACUUUUUAUUAGUUCAAGAAAAGGCAUACACAUUUAUUCAACAUGUAUACCUGGGGAGAACCAGUCAUUACCCCGAUGUUCAUUAUUUUGAUCACCACGAUAGAGCUGACUACUCUGCUAUGUAGUGCAUUUUGGGACUGCACUUAUGUAUGUUUUUGUUUAACGUGGACAAAGACUUACAGAUAGGUGCAAAAAAUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUAUAAGAAGGGAUAUUAUGAUACCUGAGACAGUUGAUUGAUGGGAGUAUUGAUAGCCA2000000009UAAAGGUUGGUUCCAGGCCAGGUGCAAUGGGUCAAGCCUGCAAUCCCCACACCAAGGUGGGAGUAUUGCUUGAAACCAGGAGUUCAAGACCAGCCUAGGCAAGAAAGCUUUUAUCUUGAGAACAUGGUGUCUGGAGUUAAAGAUAAUCUACUUUUUUACCUUAGGUAUUGGCAUACUCCACACAUCUGUACCAUUCUUGAGUGAUCGCUUAGGAAUGAAUGUGAUUUGAACUCAUUCAUGUUGAGAGGGUGUCAAAUUGAGAACCAGGUAGAUCCCCACCACCUACAGUAAAAAGGACCCUAAAGUAAAUUGGUUGAAGAAAUUAGAUCCCAAAGAUUCUUGGUGAAUUUUGAAGUCUUCAUCAGUAUAUCCAUAUUAAAACGAGAUGACAGAAGCCAAAGUAAUUAUGGGCUGACAGGACAACUGGAUCAGUUUCAUUAAAAAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCU2000000009UUAGAGGAUCUAAAGUGACCUUGAUGGACAGUGGAAGAAAUCACAACAUGGAAUUCCUCGAAUAACAAUUUAUUGACU2000000009UUAAAUAAUUUUGUCUAAUGCUACAUAUACACAAUUAAAAAACCUUUACACUAUUUCUAGAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	131	134	139	1108	1589	1667
Modification Positions	m6A	Y	m6A	Y	Y	Y
Genomic Coordinates	11:93736045:-	11:93736042:-	11:93736037:-	11:93735068:-	11:93730411:-	11:93730333:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8