General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000534011
Gene ID:	ENSG00000110074
Gene Name:	FOXRED1
Sequence (UNICHARACTER ENCODING)	GGCUGCGAUAAUAGCGAGGCAGCAGUGCAGCUUUCAGAGGGUCCGGGCUCAGAGGGGUUAUGAUUCGGAGGGUUCUGCCGCACGGCAUGGGCCGGGGCCUCUUGACCCGGAGGCCAGGCACGCGCAGAGGAGGCUUUUCUCUGGUGCUUGGCACAAUGCAUGAAGAGACUGAUGGCAUGUGGACUAUUCAGAAAACUGUGGCAACACUGUUGGGUGCAAGGUGACCUUAUGAGAUGGGCUGACAGUGGGGЖCUGCCAACUCAUGUGUCUGUUUAGCUCACCUUUUCCUGUGCCCAUCCUCCAACCCCCCAACCAUGUGGGAAGGAAAUGUUUGGCCCUCUGACCCUAACUACAUCCCACAGACUGGGAUGGAAAGGUGUCUGAGAUUAAGAAGAAGAUCAAGUCGAUCCUGCCUGGAAGGUCCUGUGAUCUACUGCAAGACACCAGCCACCUGCCUCCCGAGCACUCGGAUGUGGUGAUCGUGGGAGGUGGGGUGCUUGGCUUGUCUGUGGCCUAUUGGCUGAAGAAGCUGGAGAGCAGACGAGGUGCUAUUCGAGUGCUAGUGGUGGAACGGGACCACACGUAUUCACAGGCCUCCACUGGGCUCUCAGUAGGUGGGAUUUGUCAGCAGUUCUCAUUGCCUGAGAACAPCCAGCUCUCCCUCUUUUCAGCCAGCUUUCUACGGAACAUCAAUGAGCUUCUGUCUGCACACAGGAGUACCUGGCCGUAGUCGAUGCUCCUCCCCUGGACCUCCGGUUCAACCCCUCGGGCUACCUCUUGCUGGCUUCAGAAAAGGAUGCUGCAGCCAUGGAGAGCAACGUGAAAGUGCAGAGGAGGGAGCCAAAGUUUCUCUGAUGUCUCCUGAUCAGCUUCGGAACAAGUUUCCCUGGЖUAAACACAGAGGGAGUGGCUUUGGCGUCUUAUGGGAUGGAGGACGAAGGUUGGUUUGACCCCUGGUGUCUGCUCCAGGGGCUUCGGCGAAAGGUCCAGUCCUUGGGAGUCCUUUUCUGCCAGGGAGAGGUGACACGUUUUGUCUCUUCAUCUCAACGCAUGUUGACCACAGAUGACAAAGCGGUGGUCUUGAAAAGGAUCCAUGAAGUCCAUGUGAAGAUGGACCGCAGCCUGGAGUACCAGCCUGUGGAAUGCGCCAUUGUGAUCAACGCAGCCGGAGCCUGGUCUGCGCAAAUCGCAGCACUGGCUGGUGUUGGAGAGGGGCCGCCUGGCACCCUGCAGGGCACCAAGCUACCUGUGGAGCCGAGGAAAAGACACCAGUGGAGCCUAUUUUCGCCGGGAAGGAUUAGGUAGCAACUACCUAGGUGGUCGUAGCCCCACUGAGCAGGAAGAACCGGACCCGGCGAACCUGGAAGUGGACCAUGAUUUCUUCCAGGACAAGGUGUGGCCCCAUUUGGCCCUGAGGGUCCCAGCUUUUGAGACUCUGAAGGUUCAGAGCGCCUGGGCCGGCUAUUACGACUACAACACCUUUGACCAGAAUGGCGUGGUGGGCCCCCACCCGCUAGUUGUCAACAUGUACUUUGCUACUGGCUUCAGUGGUCACGGGCUCCAGCAGGCCCCUGGCAUUGGGCGAGCUGUAGCAGAGAUGGUACUGAAGGGCAGGUUCCAGACCAUCGACCUGAGCCCCUUCCUCUPUACCCGCUUUUACUUGGGAGAGAAGAUCCAGGAGAACAACAUCAUCUGAGCAUGUGUGCUCUGCACUGGCUCCACUGGCUUGCAPCCUGGCUGUGUUCACAGCCUUGUUUGCUGCUUCCAUCUUCCCCAGUACUGUGCCAGGCCUUCUCCCCCUCCCCAGUGUCCUCUCCUCUCAGGCAGGCCAUUGCACCCAUAUGGCUGGGCAGGCACAGGCAGUGAGGCCGAGGCCAAUAGCGAGUGAUGAGCGGGAUCCUAGGЖCUGAUCUGUAGCCCAUGCUGAUGUCACCCACCAGGGCAAUCCAUCUGGAGGCCUGAGCACCCUGGCCCAGGЖCUGGCUUCAPCCUGGCACUGACCAGGAAAGЖCUGCCUCUGACCCUCUUAGCAGACAGAGCCCAGGCAUGGGAGCACUCUGGGGCAGCCUGGCUCAGGUUUAUUGAUUUUCGUCUGUUUACCCUAUCCAU
Sequence (SHORT NAMES ENCODING)	GGCUGCGAUAAUAGCGAGGCAGCAGUGCAGCUUUCAGAGGGUCCGGGCUCAGAGGGGUUAUGAUUCGGAGGGUUCUGCCGCACGGCAUGGGCCGGGGCCUCUUGACCCGGAGGCCAGGCACGCGCAGAGGAGGCUUUUCUCUGGUGCUUGGCACAAUGCAUGAAGAGACUGAUGGCAUGUGGACUAUUCAGAAAACUGUGGCAACACUGUUGGGUGCAAGGUGACCUUAUGAGAUGGGCUGACAGUGGGGm6ACUGCCAACUCAUGUGUCUGUUUAGCUCACCUUUUCCUGUGCCCAUCCUCCAACCCCCCAACCAUGUGGGAAGGAAAUGUUUGGCCCUCUGACCCUAACUACAUCCCACAGACUGGGAUGGAAAGGUGUCUGAGAUUAAGAAGAAGAUCAAGUCGAUCCUGCCUGGAAGGUCCUGUGAUCUACUGCAAGACACCAGCCACCUGCCUCCCGAGCACUCGGAUGUGGUGAUCGUGGGAGGUGGGGUGCUUGGCUUGUCUGUGGCCUAUUGGCUGAAGAAGCUGGAGAGCAGACGAGGUGCUAUUCGAGUGCUAGUGGUGGAACGGGACCACACGUAUUCACAGGCCUCCACUGGGCUCUCAGUAGGUGGGAUUUGUCAGCAGUUCUCAUUGCCUGAGAACAYCCAGCUCUCCCUCUUUUCAGCCAGCUUUCUACGGAACAUCAAUGAGCUUCUGUCUGCACACAGGAGUACCUGGCCGUAGUCGAUGCUCCUCCCCUGGACCUCCGGUUCAACCCCUCGGGCUACCUCUUGCUGGCUUCAGAAAAGGAUGCUGCAGCCAUGGAGAGCAACGUGAAAGUGCAGAGGAGGGAGCCAAAGUUUCUCUGAUGUCUCCUGAUCAGCUUCGGAACAAGUUUCCCUGGm6AUAAACACAGAGGGAGUGGCUUUGGCGUCUUAUGGGAUGGAGGACGAAGGUUGGUUUGACCCCUGGUGUCUGCUCCAGGGGCUUCGGCGAAAGGUCCAGUCCUUGGGAGUCCUUUUCUGCCAGGGAGAGGUGACACGUUUUGUCUCUUCAUCUCAACGCAUGUUGACCACAGAUGACAAAGCGGUGGUCUUGAAAAGGAUCCAUGAAGUCCAUGUGAAGAUGGACCGCAGCCUGGAGUACCAGCCUGUGGAAUGCGCCAUUGUGAUCAACGCAGCCGGAGCCUGGUCUGCGCAAAUCGCAGCACUGGCUGGUGUUGGAGAGGGGCCGCCUGGCACCCUGCAGGGCACCAAGCUACCUGUGGAGCCGAGGAAAAGACACCAGUGGAGCCUAUUUUCGCCGGGAAGGAUUAGGUAGCAACUACCUAGGUGGUCGUAGCCCCACUGAGCAGGAAGAACCGGACCCGGCGAACCUGGAAGUGGACCAUGAUUUCUUCCAGGACAAGGUGUGGCCCCAUUUGGCCCUGAGGGUCCCAGCUUUUGAGACUCUGAAGGUUCAGAGCGCCUGGGCCGGCUAUUACGACUACAACACCUUUGACCAGAAUGGCGUGGUGGGCCCCCACCCGCUAGUUGUCAACAUGUACUUUGCUACUGGCUUCAGUGGUCACGGGCUCCAGCAGGCCCCUGGCAUUGGGCGAGCUGUAGCAGAGAUGGUACUGAAGGGCAGGUUCCAGACCAUCGACCUGAGCCCCUUCCUCUYUACCCGCUUUUACUUGGGAGAGAAGAUCCAGGAGAACAACAUCAUCUGAGCAUGUGUGCUCUGCACUGGCUCCACUGGCUUGCAYCCUGGCUGUGUUCACAGCCUUGUUUGCUGCUUCCAUCUUCCCCAGUACUGUGCCAGGCCUUCUCCCCCUCCCCAGUGUCCUCUCCUCUCAGGCAGGCCAUUGCACCCAUAUGGCUGGGCAGGCACAGGCAGUGAGGCCGAGGCCAAUAGCGAGUGAUGAGCGGGAUCCUAGGm6ACUGAUCUGUAGCCCAUGCUGAUGUCACCCACCAGGGCAAUCCAUCUGGAGGCCUGAGCACCCUGGCCCAGGm6ACUGGCUUCAYCCUGGCACUGACCAGGAAAGm6ACUGCCUCUGACCCUCUUAGCAGACAGAGCCCAGGCAUGGGAGCACUCUGGGGCAGCCUGGCUCAGGUUUAUUGAUUUUCGUCUGUUUACCCUAUCCAU
Sequence (MODOMICS CODE ENCODING)	GGCUGCGAUAAUAGCGAGGCAGCAGUGCAGCUUUCAGAGGGUCCGGGCUCAGAGGGGUUAUGAUUCGGAGGGUUCUGCCGCACGGCAUGGGCCGGGGCCUCUUGACCCGGAGGCCAGGCACGCGCAGAGGAGGCUUUUCUCUGGUGCUUGGCACAAUGCAUGAAGAGACUGAUGGCAUGUGGACUAUUCAGAAAACUGUGGCAACACUGUUGGGUGCAAGGUGACCUUAUGAGAUGGGCUGACAGUGGGG2000000006ACUGCCAACUCAUGUGUCUGUUUAGCUCACCUUUUCCUGUGCCCAUCCUCCAACCCCCCAACCAUGUGGGAAGGAAAUGUUUGGCCCUCUGACCCUAACUACAUCCCACAGACUGGGAUGGAAAGGUGUCUGAGAUUAAGAAGAAGAUCAAGUCGAUCCUGCCUGGAAGGUCCUGUGAUCUACUGCAAGACACCAGCCACCUGCCUCCCGAGCACUCGGAUGUGGUGAUCGUGGGAGGUGGGGUGCUUGGCUUGUCUGUGGCCUAUUGGCUGAAGAAGCUGGAGAGCAGACGAGGUGCUAUUCGAGUGCUAGUGGUGGAACGGGACCACACGUAUUCACAGGCCUCCACUGGGCUCUCAGUAGGUGGGAUUUGUCAGCAGUUCUCAUUGCCUGAGAACA2000000009UCCAGCUCUCCCUCUUUUCAGCCAGCUUUCUACGGAACAUCAAUGAGCUUCUGUCUGCACACAGGAGUACCUGGCCGUAGUCGAUGCUCCUCCCCUGGACCUCCGGUUCAACCCCUCGGGCUACCUCUUGCUGGCUUCAGAAAAGGAUGCUGCAGCCAUGGAGAGCAACGUGAAAGUGCAGAGGAGGGAGCCAAAGUUUCUCUGAUGUCUCCUGAUCAGCUUCGGAACAAGUUUCCCUGG2000000006AUAAACACAGAGGGAGUGGCUUUGGCGUCUUAUGGGAUGGAGGACGAAGGUUGGUUUGACCCCUGGUGUCUGCUCCAGGGGCUUCGGCGAAAGGUCCAGUCCUUGGGAGUCCUUUUCUGCCAGGGAGAGGUGACACGUUUUGUCUCUUCAUCUCAACGCAUGUUGACCACAGAUGACAAAGCGGUGGUCUUGAAAAGGAUCCAUGAAGUCCAUGUGAAGAUGGACCGCAGCCUGGAGUACCAGCCUGUGGAAUGCGCCAUUGUGAUCAACGCAGCCGGAGCCUGGUCUGCGCAAAUCGCAGCACUGGCUGGUGUUGGAGAGGGGCCGCCUGGCACCCUGCAGGGCACCAAGCUACCUGUGGAGCCGAGGAAAAGACACCAGUGGAGCCUAUUUUCGCCGGGAAGGAUUAGGUAGCAACUACCUAGGUGGUCGUAGCCCCACUGAGCAGGAAGAACCGGACCCGGCGAACCUGGAAGUGGACCAUGAUUUCUUCCAGGACAAGGUGUGGCCCCAUUUGGCCCUGAGGGUCCCAGCUUUUGAGACUCUGAAGGUUCAGAGCGCCUGGGCCGGCUAUUACGACUACAACACCUUUGACCAGAAUGGCGUGGUGGGCCCCCACCCGCUAGUUGUCAACAUGUACUUUGCUACUGGCUUCAGUGGUCACGGGCUCCAGCAGGCCCCUGGCAUUGGGCGAGCUGUAGCAGAGAUGGUACUGAAGGGCAGGUUCCAGACCAUCGACCUGAGCCCCUUCCUCU2000000009UUACCCGCUUUUACUUGGGAGAGAAGAUCCAGGAGAACAACAUCAUCUGAGCAUGUGUGCUCUGCACUGGCUCCACUGGCUUGCA2000000009UCCUGGCUGUGUUCACAGCCUUGUUUGCUGCUUCCAUCUUCCCCAGUACUGUGCCAGGCCUUCUCCCCCUCCCCAGUGUCCUCUCCUCUCAGGCAGGCCAUUGCACCCAUAUGGCUGGGCAGGCACAGGCAGUGAGGCCGAGGCCAAUAGCGAGUGAUGAGCGGGAUCCUAGG2000000006ACUGAUCUGUAGCCCAUGCUGAUGUCACCCACCAGGGCAAUCCAUCUGGAGGCCUGAGCACCCUGGCCCAGG2000000006ACUGGCUUCA2000000009UCCUGGCACUGACCAGGAAAG2000000006ACUGCCUCUGACCCUCUUAGCAGACAGAGCCCAGGCAUGGGAGCACUCUGGGGCAGCCUGGCUCAGGUUUAUUGAUUUUCGUCUGUUUACCCUAUCCAU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	251	650	890	1645	1730	1903	1975	1985	2006
Modification Positions	m6A	Y	m6A	Y	Y	m6A	m6A	Y	m6A
Genomic Coordinates	11:126271326:+	11:126273036:+	11:126274988:+	11:126277640:+	11:126277725:+	11:126277898:+	11:126277970:+	11:126277980:+	11:126278001:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	BtsJQJ3DteUq bXBqJigD9oV3 iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	dA7YoLwHrzgR ZuM5xpZmNuDL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 dA7YoLwHrzgR JASnTTw2HeNE ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB BsCW7emuRX7M Lny8GcCeVGc9 XUkp6ghERQML dA7YoLwHrzgR JASnTTw2HeNE ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8